Wall clock time and date at job start Tue Mar 31 2020 19:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47656 * 2 1 4 4 C 1.53003 * 109.47145 * 239.99783 * 2 1 3 5 5 N 1.46494 * 109.47337 * 185.00353 * 4 2 1 6 6 C 1.46501 * 120.00269 * 90.00422 * 5 4 2 7 7 C 1.34775 * 119.99785 * 269.99913 * 5 4 2 8 8 O 1.21493 * 120.00264 * 5.38874 * 7 5 4 9 9 C 1.48348 * 120.00085 * 185.39090 * 7 5 4 10 10 C 1.41704 * 126.81410 * 186.15601 * 9 7 5 11 11 C 1.37161 * 103.79605 * 179.85305 * 10 9 7 12 12 C 1.47032 * 126.85462 * 180.09173 * 11 10 9 13 13 C 1.36200 * 125.33339 * 180.02562 * 12 11 10 14 14 C 1.37718 * 114.44176 * 179.79371 * 13 12 11 15 15 C 1.33738 * 115.19024 * 0.50121 * 14 13 12 16 16 S 1.75825 * 109.96313 * 359.72889 * 15 14 13 17 17 O 1.34566 * 106.28533 * 0.39689 * 11 10 9 18 18 N 1.20869 * 111.69261 * 359.73147 * 17 11 10 19 19 N 1.46505 * 109.47161 * 120.00231 * 2 1 3 20 20 C 1.36937 * 119.99724 * 274.99840 * 19 2 1 21 21 H 1.07993 * 120.00043 * 359.97438 * 20 19 2 22 22 C 1.38815 * 119.99642 * 180.02562 * 20 19 2 23 23 N 1.31621 * 119.99701 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 120.00181 * 359.97438 * 22 20 19 25 25 H 1.48499 * 109.46898 * 90.00359 * 24 22 20 26 26 H 1.48499 * 109.47189 * 210.00036 * 24 22 20 27 27 H 1.48498 * 109.47261 * 330.00330 * 24 22 20 28 28 H 1.08997 * 109.47151 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46610 * 299.99873 * 1 2 3 30 30 H 1.09001 * 109.47079 * 59.99881 * 1 2 3 31 31 H 1.09000 * 109.46707 * 64.99731 * 4 2 1 32 32 H 1.09005 * 109.46807 * 305.00559 * 4 2 1 33 33 H 1.08995 * 109.47585 * 95.30806 * 6 5 4 34 34 H 1.09002 * 109.46986 * 215.31208 * 6 5 4 35 35 H 1.09004 * 109.47041 * 335.30530 * 6 5 4 36 36 H 1.07998 * 128.09857 * 359.97438 * 10 9 7 37 37 H 1.07995 * 122.77527 * 359.97438 * 13 12 11 38 38 H 1.07995 * 122.40012 * 180.23270 * 14 13 12 39 39 H 1.08004 * 125.01406 * 179.76341 * 15 14 13 40 40 H 0.97004 * 119.99847 * 94.99816 * 19 2 1 41 41 H 0.97000 * 119.99948 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8265 -1.1906 6 6 4.1257 -1.9922 -0.5613 7 6 4.2675 0.1490 -1.7156 8 8 3.7523 1.1602 -2.1494 9 6 5.7414 -0.0119 -1.7640 10 6 6.6890 0.9611 -2.1682 11 6 7.8944 0.3217 -2.0282 12 6 9.2257 0.8777 -2.3114 13 6 10.4051 0.2132 -2.1614 14 6 11.5202 0.9485 -2.4968 15 6 11.2761 2.1982 -2.9058 16 16 9.5454 2.5078 -2.8897 17 8 7.6148 -0.9182 -1.5864 18 7 6.4259 -1.0851 -1.4464 19 7 2.0184 -0.6907 1.1962 20 6 2.1492 -0.0075 2.3757 21 1 1.8927 1.0404 2.4241 22 6 2.6124 -0.6618 3.5090 23 7 2.7386 -0.0051 4.6427 24 14 3.0566 -2.4743 3.4251 25 1 4.4892 -2.6164 3.0607 26 1 2.8177 -3.1043 4.7484 27 1 2.2163 -3.1430 2.3995 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.7516 -0.1584 -2.1369 32 1 1.6053 -1.7199 -1.2951 33 1 4.3681 -2.7311 -1.3250 34 1 5.0385 -1.6836 -0.0515 35 1 3.4362 -2.4290 0.1611 36 1 6.5052 1.9705 -2.5054 37 1 10.4609 -0.8070 -1.8114 38 1 12.5202 0.5463 -2.4300 39 1 12.0306 2.9116 -3.2027 40 1 2.2490 -1.6319 1.1526 41 1 3.0619 -0.4624 5.4346 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676398175.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:17 Heat of formation + Delta-G solvation = 96.965073 kcal Electronic energy + Delta-G solvation = -26167.514092 eV Core-core repulsion = 22372.184856 eV Total energy + Delta-G solvation = -3795.329237 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -45.12354 -39.70479 -38.10421 -36.59176 -34.62797 -34.05172 -32.96422 -31.97396 -29.56874 -28.97015 -27.07247 -26.50914 -24.96786 -23.97814 -23.22190 -22.63054 -20.75864 -20.05080 -18.95108 -18.33411 -17.93266 -17.65219 -17.08743 -16.50736 -15.93368 -15.57870 -15.22086 -14.78098 -14.30814 -13.93050 -13.70690 -13.63189 -13.57124 -13.23699 -13.02075 -12.85633 -12.65568 -12.53845 -12.35592 -12.15192 -11.65053 -11.55042 -11.35030 -11.19949 -10.95644 -10.71462 -10.62275 -10.60904 -10.44269 -10.12868 -10.07624 -9.56744 -8.95946 -8.93336 -8.59938 -8.41435 -7.26535 -5.76412 -3.11400 0.00564 0.93973 1.18345 1.49726 1.65658 2.46903 2.81123 2.95274 3.27238 3.31571 3.33404 3.41739 3.84811 4.13456 4.56656 4.62372 4.68784 4.91231 4.98378 5.07244 5.15647 5.20275 5.33658 5.46517 5.53640 5.56765 5.63636 5.66858 5.73133 5.83507 5.95253 5.96436 6.09249 6.16380 6.18728 6.45057 6.61191 6.78565 7.02939 7.41593 7.82870 8.00472 8.19121 8.42137 9.20110 9.92238 10.11783 11.42345 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.014508 B = 0.003082 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.493214 B = 9082.284773 C = 9893.519839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.159 3.841 3 H 0.063 0.937 4 C 0.108 3.892 5 N -0.581 5.581 6 C 0.082 3.918 7 C 0.597 3.403 8 O -0.525 6.525 9 C -0.008 4.008 10 C -0.164 4.164 11 C 0.035 3.965 12 C -0.138 4.138 13 C -0.101 4.101 14 C -0.135 4.135 15 C -0.210 4.210 16 S 0.176 5.824 17 O 0.131 5.869 18 N -0.320 5.320 19 N -0.745 5.745 20 C -0.236 4.236 21 H 0.090 0.910 22 C 0.004 3.996 23 N -0.934 5.934 24 Si 0.876 3.124 25 H -0.283 1.283 26 H -0.290 1.290 27 H -0.278 1.278 28 H 0.045 0.955 29 H 0.061 0.939 30 H 0.042 0.958 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.057 0.943 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.183 0.817 37 H 0.151 0.849 38 H 0.147 0.853 39 H 0.171 0.829 40 H 0.357 0.643 41 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.954 0.049 -19.097 24.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.049 3.951 3 H 0.081 0.919 4 C -0.015 4.015 5 N -0.312 5.312 6 C -0.061 4.061 7 C 0.382 3.618 8 O -0.400 6.400 9 C -0.165 4.165 10 C -0.188 4.188 11 C -0.030 4.030 12 C -0.256 4.256 13 C -0.134 4.134 14 C -0.165 4.165 15 C -0.347 4.347 16 S 0.441 5.559 17 O 0.054 5.946 18 N -0.021 5.021 19 N -0.390 5.390 20 C -0.366 4.366 21 H 0.107 0.893 22 C -0.192 4.192 23 N -0.582 5.582 24 Si 0.707 3.293 25 H -0.209 1.209 26 H -0.217 1.217 27 H -0.204 1.204 28 H 0.065 0.935 29 H 0.080 0.920 30 H 0.061 0.939 31 H 0.106 0.894 32 H 0.095 0.905 33 H 0.075 0.925 34 H 0.099 0.901 35 H 0.093 0.907 36 H 0.200 0.800 37 H 0.168 0.832 38 H 0.165 0.835 39 H 0.189 0.811 40 H 0.191 0.809 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 14.331 0.813 -19.067 23.866 hybrid contribution 1.294 -1.873 0.479 2.327 sum 15.625 -1.060 -18.588 24.306 Atomic orbital electron populations 1.22337 0.98072 1.00921 1.00928 1.20641 0.92309 0.96669 0.85494 0.91921 1.22026 0.77641 1.01690 1.00131 1.47461 1.07013 1.20946 1.55753 1.22035 0.99310 0.87282 0.97507 1.16813 0.82889 0.83322 0.78774 1.90773 1.72819 1.27567 1.48866 1.23306 0.97239 0.91298 1.04671 1.22596 0.88854 1.02153 1.05171 1.21219 0.93088 0.86024 1.02641 1.21811 0.91989 0.99215 1.12617 1.20748 0.90048 1.01801 1.00786 1.20037 1.00223 0.93803 1.02471 1.25972 0.98911 1.01245 1.08563 1.84369 1.00778 1.08158 1.62604 1.84932 1.19667 1.28971 1.61037 1.74379 0.88985 1.22485 1.16270 1.42842 1.79905 1.09052 1.07185 1.19067 1.36445 0.95509 0.85573 0.89250 1.24644 1.01691 0.97212 0.95627 1.69693 1.52887 1.35400 1.00256 0.86694 0.78491 0.87167 0.76969 1.20926 1.21654 1.20436 0.93544 0.91970 0.93871 0.89426 0.90453 0.92481 0.90145 0.90654 0.80017 0.83163 0.83511 0.81146 0.80880 0.93121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.85 9.49 37.16 0.35 -2.49 16 2 C 0.16 3.16 3.20 -67.93 -0.22 2.94 16 3 H 0.06 1.40 8.08 -51.93 -0.42 0.98 16 4 C 0.11 1.78 4.99 -4.04 -0.02 1.76 16 5 N -0.58 -10.17 2.73 -182.50 -0.50 -10.67 16 6 C 0.08 1.35 8.86 59.85 0.53 1.88 16 7 C 0.60 10.92 7.69 -12.10 -0.09 10.82 16 8 O -0.52 -10.52 16.58 5.37 0.09 -10.43 16 9 C -0.01 -0.12 6.77 -82.66 -0.56 -0.68 16 10 C -0.16 -2.26 10.78 -38.65 -0.42 -2.67 16 11 C 0.03 0.43 7.28 -36.41 -0.26 0.16 16 12 C -0.14 -1.38 6.45 -36.75 -0.24 -1.62 16 13 C -0.10 -0.84 10.17 -40.50 -0.41 -1.25 16 14 C -0.14 -0.89 10.15 -41.35 -0.42 -1.31 16 15 C -0.21 -1.31 11.21 29.15 0.33 -0.99 16 16 S 0.18 1.41 23.11 -107.50 -2.48 -1.08 16 17 O 0.13 1.76 11.21 15.77 0.18 1.94 16 18 N -0.32 -4.94 8.94 33.36 0.30 -4.64 16 19 N -0.75 -17.55 4.37 -53.42 -0.23 -17.78 16 20 C -0.24 -6.70 10.41 -15.06 -0.16 -6.86 16 21 H 0.09 2.77 8.06 -52.49 -0.42 2.34 16 22 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16 23 N -0.93 -29.66 13.97 55.49 0.78 -28.88 16 24 Si 0.88 21.98 27.67 -169.99 -4.70 17.27 16 25 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 26 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 27 H -0.28 -6.46 6.52 56.52 0.37 -6.09 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.09 1.35 7.50 -51.93 -0.39 0.96 16 32 H 0.08 1.11 8.07 -51.93 -0.42 0.69 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.08 1.44 5.98 -51.93 -0.31 1.13 16 35 H 0.07 1.30 5.70 -51.93 -0.30 1.01 16 36 H 0.18 2.19 8.06 -52.49 -0.42 1.77 16 37 H 0.15 1.06 8.06 -52.49 -0.42 0.64 16 38 H 0.15 0.63 8.06 -52.49 -0.42 0.20 16 39 H 0.17 0.62 8.06 -52.48 -0.42 0.20 16 40 H 0.36 8.13 3.26 -40.82 -0.13 7.99 16 41 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 LS Contribution 362.02 15.07 5.46 5.46 Total: -1.00 -33.91 362.02 -7.75 -41.66 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -4.94 Total: 7.45 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: -1.68 Total: -0.29 kcal Atomic # 7 Polarization: -62.31 SS G_CDS: 0.34 Total: -61.97 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: 0.27 Total: -8.49 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.70 Total: 17.27 kcal Atomic # 16 Polarization: 1.41 SS G_CDS: -2.48 Total: -1.08 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.91 -7.75 -41.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676398175.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.622 kcal (2) G-P(sol) polarization free energy of solvation -33.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds