Wall clock time and date at job start Tue Mar 31 2020 19:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09004 * 109.47388 * 2 1 4 4 C 1.52997 * 109.47441 * 120.00203 * 2 1 3 5 5 C 1.53000 * 109.47356 * 185.00128 * 4 2 1 6 6 N 1.46509 * 109.47285 * 179.97438 * 5 4 2 7 7 C 1.36934 * 119.99674 * 179.97438 * 6 5 4 8 8 H 1.08001 * 120.00577 * 0.02562 * 7 6 5 9 9 C 1.38813 * 119.99355 * 180.02562 * 7 6 5 10 10 N 1.31617 * 120.00457 * 359.97438 * 9 7 6 11 11 Si 1.86806 * 119.99665 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47237 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.47229 * 119.99727 * 11 9 7 14 14 H 1.48507 * 109.46702 * 239.99375 * 11 9 7 15 15 N 1.46499 * 109.47420 * 240.00208 * 2 1 3 16 16 C 1.34777 * 120.00026 * 84.99621 * 15 2 1 17 17 O 1.21629 * 119.99950 * 0.02562 * 16 15 2 18 18 C 1.47300 * 119.99944 * 180.02562 * 16 15 2 19 19 C 1.35174 * 122.41665 * 180.02562 * 18 16 15 20 20 S 1.71001 * 109.16347 * 179.74935 * 19 18 16 21 21 C 1.76002 * 90.59133 * 0.33744 * 20 19 18 22 22 C 1.47145 * 125.32558 * 179.97438 * 21 20 19 23 23 C 1.36239 * 125.95942 * 359.68942 * 22 21 20 24 24 C 1.40769 * 106.71912 * 180.02562 * 23 22 21 25 25 C 1.34835 * 107.07531 * 359.97438 * 24 23 22 26 26 O 1.34243 * 108.72082 * 0.26482 * 25 24 23 27 27 N 1.30115 * 109.34077 * 359.65617 * 21 20 19 28 28 H 1.09004 * 109.47388 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47079 * 299.99393 * 1 2 3 30 30 H 1.09001 * 109.47249 * 59.99994 * 1 2 3 31 31 H 1.09000 * 109.47047 * 304.99928 * 4 2 1 32 32 H 1.08997 * 109.47255 * 64.99789 * 4 2 1 33 33 H 1.09000 * 109.47402 * 299.99937 * 5 4 2 34 34 H 1.09000 * 109.47001 * 60.00107 * 5 4 2 35 35 H 0.96997 * 119.99756 * 0.02562 * 6 5 4 36 36 H 0.97003 * 120.00175 * 180.02562 * 10 9 7 37 37 H 0.97000 * 120.00396 * 265.00220 * 15 2 1 38 38 H 1.08007 * 125.41596 * 0.03395 * 19 18 16 39 39 H 1.07996 * 126.63611 * 0.02821 * 23 22 21 40 40 H 1.07998 * 126.45796 * 180.02562 * 24 23 22 41 41 H 1.08002 * 125.63675 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.6133 1.3136 6 7 4.0532 -1.3034 2.5101 7 6 5.3953 -1.3400 2.7795 8 1 6.0938 -0.8599 2.1102 9 6 5.8580 -1.9944 3.9129 10 7 5.0067 -2.5792 4.7289 11 14 7.6888 -2.0438 4.2808 12 1 8.4272 -1.3168 3.2172 13 1 7.9475 -1.3988 5.5931 14 1 8.1469 -3.4558 4.3243 15 7 2.0183 -0.6905 -1.1962 16 6 2.1470 -0.0182 -2.3571 17 8 1.8581 1.1620 -2.4116 18 6 2.6375 -0.7127 -3.5600 19 6 2.7857 -0.0862 -4.7486 20 16 3.3787 -1.2018 -5.9010 21 6 3.3830 -2.4787 -4.6896 22 6 3.8009 -3.8703 -4.9217 23 6 4.2411 -4.3870 -6.1030 24 6 4.5283 -5.7450 -5.8690 25 6 4.2539 -5.9900 -4.5718 26 8 3.8097 -4.8575 -4.0041 27 7 2.9653 -1.9977 -3.5551 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.6054 -0.2618 2.1369 32 1 1.7516 -1.7715 1.2055 33 1 3.9995 -1.0727 0.4259 34 1 3.8531 0.4370 1.3573 35 1 3.4259 -1.7350 3.1110 36 1 5.3301 -3.0362 5.5211 37 1 2.2490 -1.6317 -1.1527 38 1 2.5689 0.9546 -4.9389 39 1 4.3487 -3.8571 -7.0379 40 1 4.8994 -6.4563 -6.5920 41 1 4.3677 -6.9413 -4.0733 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699127711.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:00 Heat of formation + Delta-G solvation = 33.078903 kcal Electronic energy + Delta-G solvation = -25274.138768 eV Core-core repulsion = 21476.039219 eV Total energy + Delta-G solvation = -3798.099549 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.87531 -40.63167 -38.84515 -36.48251 -34.32028 -33.51877 -32.22836 -31.77601 -30.57993 -29.28504 -27.83321 -26.11568 -24.13026 -23.49107 -22.25676 -21.56818 -20.91245 -20.51380 -19.74148 -19.05563 -17.78049 -17.17682 -16.61818 -16.50062 -16.17134 -15.64952 -15.38738 -14.69744 -14.32633 -14.08761 -13.87210 -13.76924 -13.39148 -13.35040 -13.30394 -13.25864 -12.88534 -12.82188 -12.42144 -12.26963 -11.82736 -11.17652 -10.99484 -10.77004 -10.62025 -10.55339 -10.52919 -10.39490 -10.23130 -10.07757 -9.97854 -9.71910 -9.66573 -8.99165 -8.82455 -8.41696 -6.87935 -5.73044 -3.01314 -0.17606 0.54589 1.11901 1.16233 1.91621 2.37696 2.68354 3.18513 3.29517 3.45711 3.51302 3.53784 3.56239 4.40223 4.52513 4.60773 4.68033 4.84086 4.87055 5.01252 5.26587 5.33452 5.33988 5.39952 5.48492 5.59321 5.61660 5.76664 5.80459 5.97673 5.99803 6.05729 6.28191 6.32544 6.38012 6.54852 6.63937 6.87671 6.91319 7.05022 7.60614 7.74576 8.19085 8.46078 9.57203 10.15194 10.50322 11.50083 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.008555 B = 0.003176 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3272.084654 B = 8813.890427 C =10977.526718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.144 3.856 3 H 0.091 0.909 4 C -0.135 4.135 5 C 0.153 3.847 6 N -0.734 5.734 7 C -0.237 4.237 8 H 0.070 0.930 9 C -0.015 4.015 10 N -0.934 5.934 11 Si 0.906 3.094 12 H -0.281 1.281 13 H -0.291 1.291 14 H -0.291 1.291 15 N -0.697 5.697 16 C 0.592 3.408 17 O -0.538 6.538 18 C 0.020 3.980 19 C -0.217 4.217 20 S 0.222 5.778 21 C 0.108 3.892 22 C 0.048 3.952 23 C -0.168 4.168 24 C -0.216 4.216 25 C -0.010 4.010 26 O -0.147 6.147 27 N -0.420 5.420 28 H 0.057 0.943 29 H 0.068 0.932 30 H 0.057 0.943 31 H 0.081 0.919 32 H 0.069 0.931 33 H 0.019 0.981 34 H 0.018 0.982 35 H 0.383 0.617 36 H 0.254 0.746 37 H 0.412 0.588 38 H 0.197 0.803 39 H 0.155 0.845 40 H 0.157 0.843 41 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.017 -2.791 -26.748 27.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.039 3.961 3 H 0.109 0.891 4 C -0.173 4.173 5 C 0.026 3.974 6 N -0.378 5.378 7 C -0.368 4.368 8 H 0.088 0.912 9 C -0.211 4.211 10 N -0.583 5.583 11 Si 0.737 3.263 12 H -0.206 1.206 13 H -0.218 1.218 14 H -0.219 1.219 15 N -0.348 5.348 16 C 0.375 3.625 17 O -0.416 6.416 18 C -0.116 4.116 19 C -0.359 4.359 20 S 0.480 5.520 21 C -0.167 4.167 22 C -0.005 4.005 23 C -0.191 4.191 24 C -0.235 4.235 25 C -0.081 4.081 26 O -0.041 6.041 27 N -0.135 5.135 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.099 0.901 32 H 0.088 0.912 33 H 0.037 0.963 34 H 0.036 0.964 35 H 0.217 0.783 36 H 0.064 0.936 37 H 0.248 0.752 38 H 0.214 0.786 39 H 0.173 0.827 40 H 0.175 0.825 41 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -6.930 -2.076 -27.025 27.976 hybrid contribution 0.746 -0.361 1.147 1.415 sum -6.184 -2.437 -25.878 26.718 Atomic orbital electron populations 1.22162 0.95226 1.02157 1.02351 1.21068 0.93731 0.97728 0.83558 0.89132 1.22064 0.98107 1.00916 0.96209 1.20642 0.90381 0.95599 0.90809 1.42362 1.05376 1.64985 1.25033 1.19285 0.83866 1.28246 1.05383 0.91239 1.24731 0.97672 1.00970 0.97700 1.69670 1.32639 1.40922 1.15098 0.86123 0.85175 0.77212 0.77761 1.20585 1.21841 1.21865 1.45980 1.65063 1.14858 1.08874 1.17043 0.77704 0.85743 0.82011 1.90802 1.51305 1.14758 1.84745 1.20243 1.06374 0.89157 0.95867 1.26681 1.05682 1.07095 0.96460 1.83687 1.57487 0.98510 1.12343 1.24303 1.05024 0.95136 0.92237 1.18833 1.07795 0.85700 0.88214 1.21801 1.04253 0.95528 0.97546 1.21747 1.08191 0.96528 0.97055 1.24435 1.00359 0.89535 0.93744 1.84239 1.64948 1.17085 1.37833 1.67186 1.11536 1.10893 1.23933 0.92419 0.91330 0.92396 0.90064 0.91244 0.96286 0.96429 0.78314 0.93611 0.75204 0.78587 0.82703 0.82544 0.77198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.01 9.48 37.15 0.35 -1.66 16 2 C 0.14 2.11 2.57 -67.94 -0.17 1.93 16 3 H 0.09 1.44 7.58 -51.93 -0.39 1.05 16 4 C -0.13 -2.22 4.87 -26.73 -0.13 -2.35 16 5 C 0.15 3.26 6.15 -4.04 -0.02 3.23 16 6 N -0.73 -19.35 5.60 -59.90 -0.34 -19.69 16 7 C -0.24 -6.90 9.99 -15.06 -0.15 -7.05 16 8 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 9 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 10 N -0.93 -28.87 13.06 55.49 0.72 -28.14 16 11 Si 0.91 23.02 29.55 -169.99 -5.02 18.00 16 12 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 13 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 14 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 15 N -0.70 -10.41 4.53 -54.92 -0.25 -10.65 16 16 C 0.59 9.14 7.76 -12.58 -0.10 9.04 16 17 O -0.54 -9.31 16.31 5.25 0.09 -9.23 16 18 C 0.02 0.27 6.64 -84.93 -0.56 -0.29 16 19 C -0.22 -2.28 10.56 29.64 0.31 -1.96 16 20 S 0.22 1.77 22.93 -107.50 -2.46 -0.69 16 21 C 0.11 1.25 7.46 -14.67 -0.11 1.14 16 22 C 0.05 0.53 7.24 -36.69 -0.27 0.27 16 23 C -0.17 -1.37 10.63 -39.35 -0.42 -1.79 16 24 C -0.22 -1.54 10.88 -39.83 -0.43 -1.98 16 25 C -0.01 -0.08 12.08 29.53 0.36 0.28 16 26 O -0.15 -1.75 10.67 4.54 0.05 -1.71 16 27 N -0.42 -5.84 10.08 -8.28 -0.08 -5.92 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 32 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.02 0.42 7.75 -51.93 -0.40 0.02 16 34 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.38 10.48 7.67 -40.82 -0.31 10.16 16 36 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 37 H 0.41 6.12 8.08 -40.82 -0.33 5.79 16 38 H 0.20 1.74 7.99 -52.48 -0.42 1.32 16 39 H 0.16 0.85 8.06 -52.49 -0.42 0.43 16 40 H 0.16 0.69 8.06 -52.49 -0.42 0.27 16 41 H 0.21 0.92 8.06 -52.49 -0.42 0.49 16 LS Contribution 374.10 15.07 5.64 5.64 Total: -1.00 -35.51 374.10 -8.31 -43.82 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -5.21 Total: 10.30 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: -1.44 Total: -1.73 kcal Atomic # 7 Polarization: -64.46 SS G_CDS: 0.06 Total: -64.41 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: 0.13 Total: -10.93 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -5.02 Total: 18.00 kcal Atomic # 16 Polarization: 1.77 SS G_CDS: -2.46 Total: -0.69 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.51 -8.31 -43.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699127711.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.902 kcal (2) G-P(sol) polarization free energy of solvation -35.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds