Wall clock time and date at job start Tue Mar 31 2020 19:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09004 * 109.47388 * 2 1 4 4 C 1.52997 * 109.47441 * 120.00203 * 2 1 3 5 5 C 1.53000 * 109.47356 * 185.00128 * 4 2 1 6 6 N 1.46509 * 109.47285 * 179.97438 * 5 4 2 7 7 C 1.36934 * 119.99674 * 179.97438 * 6 5 4 8 8 H 1.08001 * 120.00577 * 0.02562 * 7 6 5 9 9 C 1.38813 * 119.99355 * 180.02562 * 7 6 5 10 10 N 1.31617 * 120.00457 * 359.97438 * 9 7 6 11 11 Si 1.86806 * 119.99665 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47237 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.47229 * 119.99727 * 11 9 7 14 14 H 1.48507 * 109.46702 * 239.99375 * 11 9 7 15 15 N 1.46499 * 109.47420 * 240.00208 * 2 1 3 16 16 C 1.34777 * 120.00026 * 84.99621 * 15 2 1 17 17 O 1.21629 * 119.99950 * 0.02562 * 16 15 2 18 18 C 1.47300 * 119.99944 * 180.02562 * 16 15 2 19 19 C 1.35174 * 122.41665 * 180.02562 * 18 16 15 20 20 S 1.71001 * 109.16347 * 179.74935 * 19 18 16 21 21 C 1.76002 * 90.59133 * 0.33744 * 20 19 18 22 22 C 1.47145 * 125.32558 * 179.97438 * 21 20 19 23 23 C 1.36239 * 125.95942 * 359.68942 * 22 21 20 24 24 C 1.40769 * 106.71912 * 180.02562 * 23 22 21 25 25 C 1.34835 * 107.07531 * 359.97438 * 24 23 22 26 26 O 1.34243 * 108.72082 * 0.26482 * 25 24 23 27 27 N 1.30115 * 109.34077 * 359.65617 * 21 20 19 28 28 H 1.09004 * 109.47388 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47079 * 299.99393 * 1 2 3 30 30 H 1.09001 * 109.47249 * 59.99994 * 1 2 3 31 31 H 1.09000 * 109.47047 * 304.99928 * 4 2 1 32 32 H 1.08997 * 109.47255 * 64.99789 * 4 2 1 33 33 H 1.09000 * 109.47402 * 299.99937 * 5 4 2 34 34 H 1.09000 * 109.47001 * 60.00107 * 5 4 2 35 35 H 0.96997 * 119.99756 * 0.02562 * 6 5 4 36 36 H 0.97003 * 120.00175 * 180.02562 * 10 9 7 37 37 H 0.97000 * 120.00396 * 265.00220 * 15 2 1 38 38 H 1.08007 * 125.41596 * 0.03395 * 19 18 16 39 39 H 1.07996 * 126.63611 * 0.02821 * 23 22 21 40 40 H 1.07998 * 126.45796 * 180.02562 * 24 23 22 41 41 H 1.08002 * 125.63675 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.6133 1.3136 6 7 4.0532 -1.3034 2.5101 7 6 5.3953 -1.3400 2.7795 8 1 6.0938 -0.8599 2.1102 9 6 5.8580 -1.9944 3.9129 10 7 5.0067 -2.5792 4.7289 11 14 7.6888 -2.0438 4.2808 12 1 8.4272 -1.3168 3.2172 13 1 7.9475 -1.3988 5.5931 14 1 8.1469 -3.4558 4.3243 15 7 2.0183 -0.6905 -1.1962 16 6 2.1470 -0.0182 -2.3571 17 8 1.8581 1.1620 -2.4116 18 6 2.6375 -0.7127 -3.5600 19 6 2.7857 -0.0862 -4.7486 20 16 3.3787 -1.2018 -5.9010 21 6 3.3830 -2.4787 -4.6896 22 6 3.8009 -3.8703 -4.9217 23 6 4.2411 -4.3870 -6.1030 24 6 4.5283 -5.7450 -5.8690 25 6 4.2539 -5.9900 -4.5718 26 8 3.8097 -4.8575 -4.0041 27 7 2.9653 -1.9977 -3.5551 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.6054 -0.2618 2.1369 32 1 1.7516 -1.7715 1.2055 33 1 3.9995 -1.0727 0.4259 34 1 3.8531 0.4370 1.3573 35 1 3.4259 -1.7350 3.1110 36 1 5.3301 -3.0362 5.5211 37 1 2.2490 -1.6317 -1.1527 38 1 2.5689 0.9546 -4.9389 39 1 4.3487 -3.8571 -7.0379 40 1 4.8994 -6.4563 -6.5920 41 1 4.3677 -6.9413 -4.0733 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699127711.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:59 Heat of formation + Delta-G solvation = 7.834113 kcal Electronic energy + Delta-G solvation = -25275.233464 eV Core-core repulsion = 21476.039219 eV Total energy + Delta-G solvation = -3799.194245 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.53681 -41.64064 -39.90075 -37.90054 -36.16634 -34.18696 -33.67230 -32.91313 -32.06734 -30.03126 -29.47242 -26.99937 -25.90197 -24.59641 -23.23706 -22.89440 -21.96397 -21.63549 -20.67638 -19.87815 -19.22139 -18.53736 -17.71272 -17.28443 -17.22287 -16.76578 -16.46346 -16.35639 -15.57348 -15.47614 -15.34344 -14.99844 -14.89367 -14.62406 -14.32594 -13.97674 -13.86547 -13.63991 -13.46882 -13.18278 -13.10477 -12.93498 -12.92688 -12.44198 -12.27039 -12.04450 -11.99267 -11.68581 -11.36147 -11.31821 -11.12232 -10.99475 -10.89059 -10.47177 -10.15849 -9.11019 -9.05252 -7.99411 -5.29053 -0.94372 -0.17533 0.30133 0.32805 1.17564 1.44077 1.45313 1.55671 1.69706 2.05003 2.13712 2.24721 2.52269 2.74341 3.33787 3.52923 3.63545 3.96084 3.98641 4.01145 4.07472 4.10315 4.13979 4.34219 4.50382 4.56943 4.59862 4.71055 4.73294 4.80852 4.91788 4.93927 5.00398 5.15082 5.21251 5.27627 5.43727 5.45108 5.49124 5.97192 6.20418 6.23251 6.48244 7.02278 7.29379 8.02979 8.28861 9.24142 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.008555 B = 0.003176 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3272.084654 B = 8813.890427 C =10977.526718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.149 3.851 3 H 0.078 0.922 4 C -0.119 4.119 5 C 0.155 3.845 6 N -0.744 5.744 7 C -0.252 4.252 8 H 0.068 0.932 9 C -0.071 4.071 10 N -0.966 5.966 11 Si 0.974 3.026 12 H -0.270 1.270 13 H -0.288 1.288 14 H -0.289 1.289 15 N -0.699 5.699 16 C 0.589 3.411 17 O -0.565 6.565 18 C -0.011 4.011 19 C -0.223 4.223 20 S 0.329 5.671 21 C 0.082 3.918 22 C 0.007 3.993 23 C -0.153 4.153 24 C -0.216 4.216 25 C -0.018 4.018 26 O -0.185 6.185 27 N -0.459 5.459 28 H 0.065 0.935 29 H 0.084 0.916 30 H 0.053 0.947 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.012 0.988 34 H 0.011 0.989 35 H 0.376 0.624 36 H 0.253 0.747 37 H 0.411 0.589 38 H 0.210 0.790 39 H 0.183 0.817 40 H 0.188 0.812 41 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.328 -3.320 -29.176 30.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.045 3.955 3 H 0.096 0.904 4 C -0.157 4.157 5 C 0.029 3.971 6 N -0.387 5.387 7 C -0.383 4.383 8 H 0.086 0.914 9 C -0.264 4.264 10 N -0.617 5.617 11 Si 0.803 3.197 12 H -0.195 1.195 13 H -0.215 1.215 14 H -0.215 1.215 15 N -0.349 5.349 16 C 0.373 3.627 17 O -0.445 6.445 18 C -0.147 4.147 19 C -0.366 4.366 20 S 0.588 5.412 21 C -0.192 4.192 22 C -0.046 4.046 23 C -0.175 4.175 24 C -0.234 4.234 25 C -0.088 4.088 26 O -0.080 6.080 27 N -0.175 5.175 28 H 0.084 0.916 29 H 0.102 0.898 30 H 0.072 0.928 31 H 0.107 0.893 32 H 0.092 0.908 33 H 0.030 0.970 34 H 0.029 0.971 35 H 0.208 0.792 36 H 0.062 0.938 37 H 0.247 0.753 38 H 0.227 0.773 39 H 0.200 0.800 40 H 0.205 0.795 41 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -6.244 -2.599 -29.498 30.263 hybrid contribution 0.570 -0.256 1.739 1.848 sum -5.674 -2.855 -27.759 28.476 Atomic orbital electron populations 1.22080 0.93075 1.02898 1.02912 1.20983 0.95282 0.96571 0.82710 0.90412 1.21904 0.94588 1.01588 0.97589 1.20723 0.93543 0.94275 0.88587 1.42537 1.04576 1.65344 1.26284 1.19622 0.85202 1.28009 1.05490 0.91366 1.25570 1.02222 1.00950 0.97640 1.69813 1.34587 1.41777 1.15500 0.85072 0.79863 0.77184 0.77619 1.19484 1.21527 1.21548 1.46012 1.65077 1.14762 1.09019 1.17372 0.77112 0.85546 0.82632 1.90765 1.52703 1.15740 1.85323 1.20013 1.08962 0.89705 0.96020 1.27030 1.04525 1.08403 0.96628 1.83204 1.54575 0.94745 1.08668 1.24733 1.04763 0.96477 0.93199 1.19180 1.10469 0.85738 0.89242 1.22236 1.01879 0.96009 0.97422 1.22173 1.07442 0.96625 0.97188 1.25206 0.99414 0.89565 0.94622 1.84205 1.66069 1.18385 1.39373 1.67128 1.13198 1.11247 1.25930 0.91575 0.89757 0.92788 0.89262 0.90833 0.96985 0.97113 0.79153 0.93775 0.75314 0.77306 0.79975 0.79500 0.74501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.70 9.48 71.98 0.68 -3.01 16 2 C 0.15 4.44 2.57 44.99 0.12 4.55 16 3 H 0.08 2.53 7.58 -2.39 -0.02 2.52 16 4 C -0.12 -3.95 4.87 30.59 0.15 -3.80 16 5 C 0.16 6.76 6.15 86.38 0.53 7.29 16 6 N -0.74 -40.07 5.60 -343.43 -1.92 -41.99 16 7 C -0.25 -14.86 9.99 84.03 0.84 -14.02 16 8 H 0.07 3.96 7.83 -2.91 -0.02 3.94 16 9 C -0.07 -4.24 5.50 84.86 0.47 -3.77 16 10 N -0.97 -60.34 13.06 21.65 0.28 -60.05 16 11 Si 0.97 47.52 29.55 68.60 2.03 49.55 16 12 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 13 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 14 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 15 N -0.70 -21.63 4.53 -445.93 -2.02 -23.65 16 16 C 0.59 18.84 7.76 86.63 0.67 19.51 16 17 O -0.57 -20.10 16.31 -4.12 -0.07 -20.16 16 18 C -0.01 -0.29 6.64 40.70 0.27 -0.02 16 19 C -0.22 -4.51 10.56 67.11 0.71 -3.80 16 20 S 0.33 4.55 22.93 -56.49 -1.30 3.26 16 21 C 0.08 1.88 7.46 87.29 0.65 2.54 16 22 C 0.01 0.14 7.24 24.14 0.17 0.32 16 23 C -0.15 -2.15 10.63 22.42 0.24 -1.91 16 24 C -0.22 -2.55 10.88 22.11 0.24 -2.31 16 25 C -0.02 -0.27 12.08 67.04 0.81 0.54 16 26 O -0.18 -4.48 10.67 -6.67 -0.07 -4.55 16 27 N -0.46 -13.18 10.08 -180.09 -1.82 -14.99 16 28 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.09 2.84 8.14 -2.39 -0.02 2.83 16 32 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 33 H 0.01 0.55 7.75 -2.39 -0.02 0.53 16 34 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.38 21.01 7.67 -92.71 -0.71 20.30 16 36 H 0.25 15.18 8.31 -92.71 -0.77 14.41 16 37 H 0.41 12.85 8.08 -92.71 -0.75 12.11 16 38 H 0.21 3.49 7.99 -2.91 -0.02 3.47 16 39 H 0.18 1.34 8.06 -2.91 -0.02 1.32 16 40 H 0.19 0.95 8.06 -2.91 -0.02 0.93 16 41 H 0.24 1.71 8.06 -2.91 -0.02 1.69 16 Total: -1.00 -78.51 374.10 1.29 -77.22 By element: Atomic # 1 Polarization: 33.66 SS G_CDS: -0.38 Total: 33.28 kcal Atomic # 6 Polarization: -4.46 SS G_CDS: 6.55 Total: 2.09 kcal Atomic # 7 Polarization: -135.22 SS G_CDS: -5.48 Total: -140.69 kcal Atomic # 8 Polarization: -24.58 SS G_CDS: -0.14 Total: -24.71 kcal Atomic # 14 Polarization: 47.52 SS G_CDS: 2.03 Total: 49.55 kcal Atomic # 16 Polarization: 4.55 SS G_CDS: -1.30 Total: 3.26 kcal Total: -78.51 1.29 -77.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699127711.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.058 kcal (2) G-P(sol) polarization free energy of solvation -78.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds