Wall clock time and date at job start Tue Mar 31 2020 19:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46755 * 2 1 4 4 C 1.52998 * 109.47184 * 119.99752 * 2 1 3 5 5 C 1.52995 * 109.46959 * 184.99837 * 4 2 1 6 6 N 1.46504 * 109.46899 * 180.02562 * 5 4 2 7 7 C 1.36940 * 119.99847 * 180.02562 * 6 5 4 8 8 H 1.07999 * 120.00110 * 359.97438 * 7 6 5 9 9 C 1.38810 * 120.00156 * 180.02562 * 7 6 5 10 10 N 1.31615 * 120.00520 * 179.97438 * 9 7 6 11 11 Si 1.86803 * 119.99543 * 359.97438 * 9 7 6 12 12 H 1.48500 * 109.47199 * 90.00622 * 11 9 7 13 13 H 1.48505 * 109.46835 * 209.99838 * 11 9 7 14 14 H 1.48493 * 109.47497 * 329.99807 * 11 9 7 15 15 N 1.46508 * 109.47067 * 240.00202 * 2 1 3 16 16 C 1.34766 * 119.99974 * 84.99940 * 15 2 1 17 17 O 1.21640 * 120.00486 * 359.97438 * 16 15 2 18 18 C 1.47269 * 119.99885 * 180.02562 * 16 15 2 19 19 C 1.35084 * 122.43527 * 179.97438 * 18 16 15 20 20 S 1.71006 * 109.14721 * 179.74881 * 19 18 16 21 21 C 1.75997 * 90.58918 * 0.34219 * 20 19 18 22 22 C 1.47873 * 125.31748 * 179.91666 * 21 20 19 23 23 C 1.46857 * 127.14055 * 359.97438 * 22 21 20 24 24 C 1.34305 * 106.00839 * 180.13325 * 23 22 21 25 25 O 1.34173 * 109.05259 * 359.60459 * 24 23 22 26 26 C 1.34004 * 110.80178 * 0.26286 * 25 24 23 27 27 N 1.29875 * 109.36585 * 359.65364 * 21 20 19 28 28 H 1.09004 * 109.47181 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47099 * 299.99993 * 1 2 3 30 30 H 1.09004 * 109.46752 * 60.00379 * 1 2 3 31 31 H 1.08995 * 109.47466 * 305.00245 * 4 2 1 32 32 H 1.09005 * 109.47077 * 65.00155 * 4 2 1 33 33 H 1.09004 * 109.47333 * 300.00315 * 5 4 2 34 34 H 1.08998 * 109.47073 * 60.00653 * 5 4 2 35 35 H 0.96994 * 120.00335 * 0.02562 * 6 5 4 36 36 H 0.96995 * 120.00371 * 179.97438 * 10 9 7 37 37 H 0.96998 * 119.99333 * 265.00005 * 15 2 1 38 38 H 1.08007 * 125.42271 * 0.02942 * 19 18 16 39 39 H 1.07998 * 126.99954 * 0.04038 * 23 22 21 40 40 H 1.08002 * 125.47798 * 179.87384 * 24 23 22 41 41 H 1.08001 * 125.79397 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.6132 1.3136 6 7 4.0532 -1.3043 2.5095 7 6 5.3953 -1.3403 2.7794 8 1 6.0937 -0.8596 2.1104 9 6 5.8581 -1.9956 3.9122 10 7 7.1480 -2.0306 4.1714 11 14 4.6501 -2.8276 5.0689 12 1 4.4452 -4.2351 4.6419 13 1 5.1920 -2.8037 6.4513 14 1 3.3530 -2.1056 5.0331 15 7 2.0184 -0.6906 -1.1963 16 6 2.1471 -0.0183 -2.3571 17 8 1.8573 1.1619 -2.4119 18 6 2.6374 -0.7126 -3.5597 19 6 2.7847 -0.0872 -4.7480 20 16 3.3779 -1.2035 -5.8996 21 6 3.3831 -2.4793 -4.6872 22 6 3.8025 -3.8781 -4.9199 23 6 4.2845 -4.4615 -6.1784 24 6 4.5416 -5.7528 -5.9135 25 8 4.2704 -5.9975 -4.6224 26 6 3.8275 -4.8903 -4.0111 27 7 2.9663 -1.9989 -3.5548 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 1.6054 -0.2617 2.1369 32 1 1.7517 -1.7715 1.2056 33 1 3.9994 -1.0727 0.4258 34 1 3.8532 0.4370 1.3573 35 1 3.4260 -1.7364 3.1101 36 1 7.4714 -2.4882 4.9631 37 1 2.2490 -1.6317 -1.1526 38 1 2.5672 0.9533 -4.9390 39 1 4.4059 -3.9557 -7.1249 40 1 4.9118 -6.4769 -6.6242 41 1 3.5397 -4.8142 -2.9729 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699142863.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:05 Heat of formation + Delta-G solvation = 32.403783 kcal Electronic energy + Delta-G solvation = -25266.643901 eV Core-core repulsion = 21468.515076 eV Total energy + Delta-G solvation = -3798.128824 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.76662 -40.59044 -38.84819 -36.59515 -34.49117 -33.80744 -31.96713 -31.14170 -30.74878 -29.40248 -28.26527 -26.20250 -24.26133 -23.52648 -22.06905 -21.40301 -20.90538 -20.55540 -19.48794 -19.05279 -17.81955 -17.56866 -16.67317 -16.37163 -16.16701 -15.58371 -15.40675 -14.71649 -14.49234 -14.26200 -13.97042 -13.91502 -13.61728 -13.55649 -13.30600 -13.28953 -12.62454 -12.59362 -12.53889 -12.24427 -12.00734 -11.51201 -11.20911 -10.90241 -10.80974 -10.72223 -10.49655 -10.27521 -10.13026 -10.06823 -9.87529 -9.57518 -9.41677 -9.05090 -8.86441 -8.52561 -7.21410 -5.74824 -3.10487 0.04752 0.86181 1.28730 1.31964 1.64958 2.47137 2.67144 3.17107 3.33239 3.38153 3.40554 3.45943 3.56889 4.39673 4.41566 4.60431 4.70785 4.79466 4.92961 5.00092 5.09912 5.17528 5.28080 5.31462 5.52527 5.60788 5.64830 5.66295 5.73451 5.81566 5.88608 5.95128 5.96560 6.17078 6.23671 6.49421 6.66975 6.74877 6.78089 7.11032 7.58129 8.01859 8.17571 8.44059 9.23315 9.95440 10.15458 11.43744 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.009122 B = 0.003159 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3068.628428 B = 8860.989690 C =10945.594432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.144 3.856 3 H 0.092 0.908 4 C -0.139 4.139 5 C 0.157 3.843 6 N -0.757 5.757 7 C -0.244 4.244 8 H 0.089 0.911 9 C 0.003 3.997 10 N -0.935 5.935 11 Si 0.886 3.114 12 H -0.284 1.284 13 H -0.291 1.291 14 H -0.277 1.277 15 N -0.700 5.700 16 C 0.593 3.407 17 O -0.539 6.539 18 C 0.020 3.980 19 C -0.221 4.221 20 S 0.178 5.822 21 C 0.135 3.865 22 C -0.142 4.142 23 C -0.199 4.199 24 C -0.027 4.027 25 O -0.174 6.174 26 C 0.045 3.955 27 N -0.442 5.442 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.028 0.972 34 H 0.026 0.974 35 H 0.360 0.640 36 H 0.259 0.741 37 H 0.410 0.590 38 H 0.191 0.809 39 H 0.156 0.844 40 H 0.209 0.791 41 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.975 -4.295 -25.046 28.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.040 3.960 3 H 0.110 0.890 4 C -0.177 4.177 5 C 0.030 3.970 6 N -0.402 5.402 7 C -0.373 4.373 8 H 0.107 0.893 9 C -0.192 4.192 10 N -0.583 5.583 11 Si 0.716 3.284 12 H -0.211 1.211 13 H -0.217 1.217 14 H -0.203 1.203 15 N -0.350 5.350 16 C 0.377 3.623 17 O -0.416 6.416 18 C -0.115 4.115 19 C -0.363 4.363 20 S 0.437 5.563 21 C -0.142 4.142 22 C -0.148 4.148 23 C -0.219 4.219 24 C -0.094 4.094 25 O -0.069 6.069 26 C -0.029 4.029 27 N -0.157 5.157 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.098 0.902 32 H 0.087 0.913 33 H 0.046 0.954 34 H 0.044 0.956 35 H 0.193 0.807 36 H 0.069 0.931 37 H 0.246 0.754 38 H 0.209 0.791 39 H 0.174 0.826 40 H 0.225 0.775 41 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -11.680 -3.877 -25.548 28.358 hybrid contribution -0.876 -0.300 1.562 1.816 sum -12.556 -4.176 -23.986 27.394 Atomic orbital electron populations 1.22166 0.95228 1.02096 1.02421 1.21027 0.93718 0.97825 0.83472 0.89010 1.22112 0.98126 1.00887 0.96569 1.20622 0.90146 0.95994 0.90234 1.42707 1.05284 1.66248 1.25998 1.19069 0.82198 1.29248 1.06826 0.89330 1.24678 0.95607 1.00723 0.98217 1.69703 1.11735 1.48257 1.28614 0.86522 0.80946 0.79794 0.81113 1.21087 1.21743 1.20337 1.45928 1.65477 1.14736 1.08882 1.17077 0.77519 0.85728 0.82023 1.90806 1.51158 1.14870 1.84775 1.20141 1.06516 0.89297 0.95583 1.26482 1.06335 1.06888 0.96582 1.83773 1.58115 1.00200 1.14211 1.24759 1.02165 0.96462 0.90767 1.19022 1.10864 0.89840 0.95036 1.22745 1.06395 0.94672 0.98098 1.23925 1.04257 0.97581 0.83598 1.83955 1.64532 1.35928 1.22475 1.24460 0.97409 0.82357 0.98678 1.67009 1.13522 1.10918 1.24282 0.92474 0.91403 0.92287 0.90153 0.91314 0.95421 0.95592 0.80718 0.93079 0.75356 0.79144 0.82617 0.77469 0.76522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.85 9.48 37.16 0.35 -1.49 16 2 C 0.14 1.96 2.57 -67.93 -0.17 1.78 16 3 H 0.09 1.38 7.58 -51.93 -0.39 0.99 16 4 C -0.14 -2.06 4.87 -26.73 -0.13 -2.19 16 5 C 0.16 3.11 6.15 -4.04 -0.02 3.08 16 6 N -0.76 -18.34 5.41 -59.91 -0.32 -18.66 16 7 C -0.24 -7.08 10.47 -15.06 -0.16 -7.24 16 8 H 0.09 2.78 8.06 -52.49 -0.42 2.36 16 9 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 10 N -0.93 -29.83 13.97 55.49 0.78 -29.06 16 11 Si 0.89 22.27 27.73 -169.99 -4.71 17.56 16 12 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 13 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 14 H -0.28 -6.52 6.52 56.52 0.37 -6.16 16 15 N -0.70 -9.63 4.53 -54.93 -0.25 -9.88 16 16 C 0.59 8.85 7.76 -12.59 -0.10 8.75 16 17 O -0.54 -9.22 16.31 5.24 0.09 -9.14 16 18 C 0.02 0.27 6.64 -84.91 -0.56 -0.29 16 19 C -0.22 -2.43 10.56 29.61 0.31 -2.12 16 20 S 0.18 1.55 23.07 -107.50 -2.48 -0.93 16 21 C 0.13 1.47 7.46 -14.44 -0.11 1.36 16 22 C -0.14 -1.38 6.32 -103.25 -0.65 -2.03 16 23 C -0.20 -1.43 11.04 -37.48 -0.41 -1.85 16 24 C -0.03 -0.17 12.04 29.34 0.35 0.18 16 25 O -0.17 -1.50 10.54 6.86 0.07 -1.43 16 26 C 0.04 0.41 12.05 29.95 0.36 0.77 16 27 N -0.44 -5.60 10.03 -8.11 -0.08 -5.69 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.03 0.56 7.75 -51.93 -0.40 0.16 16 34 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.36 8.39 5.53 -40.82 -0.23 8.17 16 36 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 37 H 0.41 5.38 8.08 -40.82 -0.33 5.05 16 38 H 0.19 1.86 7.99 -52.48 -0.42 1.44 16 39 H 0.16 0.78 8.06 -52.49 -0.42 0.36 16 40 H 0.21 0.48 8.06 -52.49 -0.42 0.06 16 41 H 0.22 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 371.57 15.07 5.60 5.60 Total: -1.00 -35.69 371.57 -7.52 -43.21 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -5.17 Total: 9.70 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: -1.04 Total: -1.27 kcal Atomic # 7 Polarization: -63.41 SS G_CDS: 0.12 Total: -63.29 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.16 Total: -10.57 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.71 Total: 17.56 kcal Atomic # 16 Polarization: 1.55 SS G_CDS: -2.48 Total: -0.93 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.69 -7.52 -43.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699142863.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.613 kcal (2) G-P(sol) polarization free energy of solvation -35.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds