Wall clock time and date at job start Tue Mar 31 2020 19:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47154 * 2 1 4 4 C 1.53000 * 109.47164 * 240.00540 * 2 1 3 5 5 C 1.52994 * 109.47391 * 174.99924 * 4 2 1 6 6 N 1.46498 * 109.47268 * 179.97438 * 5 4 2 7 7 C 1.36943 * 120.00202 * 179.97438 * 6 5 4 8 8 H 1.07998 * 119.99506 * 0.02562 * 7 6 5 9 9 C 1.38809 * 120.00083 * 179.97438 * 7 6 5 10 10 N 1.31614 * 119.99853 * 179.97438 * 9 7 6 11 11 Si 1.86806 * 120.00080 * 0.02562 * 9 7 6 12 12 H 1.48501 * 109.46938 * 89.99497 * 11 9 7 13 13 H 1.48499 * 109.46971 * 209.99168 * 11 9 7 14 14 H 1.48497 * 109.47083 * 329.99723 * 11 9 7 15 15 N 1.46496 * 109.47415 * 120.00478 * 2 1 3 16 16 C 1.34779 * 119.99717 * 274.99978 * 15 2 1 17 17 O 1.21637 * 120.00180 * 0.02562 * 16 15 2 18 18 C 1.47268 * 119.99728 * 179.97438 * 16 15 2 19 19 C 1.35089 * 122.42978 * 179.97438 * 18 16 15 20 20 S 1.70999 * 109.14492 * 180.02562 * 19 18 16 21 21 C 1.75999 * 90.59342 * 0.02562 * 20 19 18 22 22 C 1.47870 * 125.32046 * 179.73670 * 21 20 19 23 23 C 1.46860 * 127.14196 * 359.73104 * 22 21 20 24 24 C 1.34302 * 106.00502 * 179.83419 * 23 22 21 25 25 O 1.34177 * 109.05571 * 0.43471 * 24 23 22 26 26 C 1.33998 * 110.80037 * 359.71414 * 25 24 23 27 27 N 1.29876 * 109.36014 * 359.97438 * 21 20 19 28 28 H 1.08995 * 109.46734 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46471 * 299.99685 * 1 2 3 30 30 H 1.09004 * 109.47275 * 59.99777 * 1 2 3 31 31 H 1.09004 * 109.47112 * 295.00013 * 4 2 1 32 32 H 1.09004 * 109.47361 * 54.99328 * 4 2 1 33 33 H 1.08997 * 109.47180 * 299.99715 * 5 4 2 34 34 H 1.09001 * 109.47397 * 59.99936 * 5 4 2 35 35 H 0.97003 * 120.00119 * 359.97438 * 6 5 4 36 36 H 0.97005 * 120.00281 * 180.02562 * 10 9 7 37 37 H 0.96999 * 120.00114 * 94.99654 * 15 2 1 38 38 H 1.08005 * 125.42652 * 0.05714 * 19 18 16 39 39 H 1.07993 * 126.99591 * 0.02562 * 23 22 21 40 40 H 1.08004 * 125.47439 * 180.14851 * 24 23 22 41 41 H 1.08000 * 125.78896 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5648 -0.6132 -1.3138 6 7 4.0532 -1.3042 -2.5097 7 6 5.3952 -1.3402 -2.7797 8 1 6.0936 -0.8595 -2.1107 9 6 5.8580 -1.9954 -3.9125 10 7 7.1478 -2.0295 -4.1722 11 14 4.6499 -2.8275 -5.0692 12 1 4.2146 -1.8609 -6.1092 13 1 5.3070 -3.9903 -5.7183 14 1 3.4680 -3.2924 -4.2998 15 7 2.0184 -0.6907 1.1961 16 6 2.1471 -0.0184 2.3571 17 8 1.8574 1.1617 2.4119 18 6 2.6376 -0.7128 3.5596 19 6 2.7859 -0.0871 4.7476 20 16 3.3728 -1.2051 5.9008 21 6 3.3850 -2.4791 4.6865 22 6 3.8102 -3.8763 4.9176 23 6 4.2989 -4.4581 6.1744 24 6 4.5589 -5.7487 5.9085 25 8 4.2841 -5.9941 4.6184 26 6 3.8356 -4.8884 4.0086 27 7 2.9670 -1.9989 3.5545 28 1 -0.3632 -1.0276 -0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.7517 -1.7714 -1.2058 32 1 1.6053 -0.2616 -2.1370 33 1 3.8532 0.4370 -1.3574 34 1 3.9995 -1.0728 -0.4261 35 1 3.4259 -1.7363 -3.1104 36 1 7.4712 -2.4871 -4.9641 37 1 2.2491 -1.6318 1.1524 38 1 2.5679 0.9533 4.9388 39 1 4.4210 -3.9521 7.1206 40 1 4.9338 -6.4716 6.6180 41 1 3.5441 -4.8132 2.9714 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699142864.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:08 Heat of formation + Delta-G solvation = 32.401540 kcal Electronic energy + Delta-G solvation = -25267.607391 eV Core-core repulsion = 21469.478470 eV Total energy + Delta-G solvation = -3798.128921 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.76693 -40.59066 -38.84850 -36.59525 -34.49086 -33.80762 -31.96648 -31.14196 -30.74858 -29.40246 -28.26475 -26.20307 -24.26142 -23.52644 -22.06910 -21.40255 -20.90532 -20.55502 -19.48780 -19.05275 -17.81967 -17.56876 -16.67263 -16.37188 -16.16692 -15.58237 -15.40840 -14.71500 -14.49532 -14.26281 -13.97048 -13.91235 -13.61486 -13.55632 -13.31011 -13.29020 -12.62253 -12.59398 -12.53974 -12.24494 -12.00632 -11.50324 -11.22802 -10.88626 -10.80902 -10.72486 -10.49954 -10.27523 -10.13113 -10.06789 -9.87559 -9.57520 -9.41704 -9.04857 -8.86554 -8.52530 -7.21376 -5.74833 -3.10479 0.04716 0.86163 1.28780 1.31912 1.64957 2.47114 2.67148 3.17086 3.33292 3.37966 3.40712 3.45903 3.56927 4.39659 4.41558 4.60418 4.70783 4.79480 4.92966 5.00075 5.09911 5.17546 5.28295 5.31466 5.52084 5.60669 5.65157 5.66536 5.73427 5.81474 5.88612 5.94982 5.96673 6.17133 6.23682 6.49485 6.66966 6.74912 6.78142 7.11071 7.58132 8.01895 8.17574 8.44048 9.23303 9.95453 10.15453 11.43725 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.009119 B = 0.003161 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3069.880999 B = 8855.374586 C =10945.013875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.144 3.856 3 H 0.092 0.908 4 C -0.139 4.139 5 C 0.157 3.843 6 N -0.757 5.757 7 C -0.244 4.244 8 H 0.089 0.911 9 C 0.003 3.997 10 N -0.935 5.935 11 Si 0.886 3.114 12 H -0.284 1.284 13 H -0.291 1.291 14 H -0.277 1.277 15 N -0.700 5.700 16 C 0.593 3.407 17 O -0.539 6.539 18 C 0.020 3.980 19 C -0.221 4.221 20 S 0.178 5.822 21 C 0.135 3.865 22 C -0.142 4.142 23 C -0.199 4.199 24 C -0.027 4.027 25 O -0.174 6.174 26 C 0.045 3.955 27 N -0.442 5.442 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.027 0.973 34 H 0.027 0.973 35 H 0.360 0.640 36 H 0.259 0.741 37 H 0.410 0.590 38 H 0.191 0.809 39 H 0.156 0.844 40 H 0.209 0.791 41 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.961 -4.292 25.044 28.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.040 3.960 3 H 0.110 0.890 4 C -0.177 4.177 5 C 0.030 3.970 6 N -0.402 5.402 7 C -0.373 4.373 8 H 0.107 0.893 9 C -0.192 4.192 10 N -0.583 5.583 11 Si 0.716 3.284 12 H -0.211 1.211 13 H -0.217 1.217 14 H -0.203 1.203 15 N -0.350 5.350 16 C 0.377 3.623 17 O -0.416 6.416 18 C -0.115 4.115 19 C -0.363 4.363 20 S 0.437 5.563 21 C -0.142 4.142 22 C -0.148 4.148 23 C -0.219 4.219 24 C -0.094 4.094 25 O -0.069 6.069 26 C -0.029 4.029 27 N -0.157 5.157 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.099 0.901 33 H 0.045 0.955 34 H 0.045 0.955 35 H 0.193 0.807 36 H 0.069 0.931 37 H 0.246 0.754 38 H 0.209 0.791 39 H 0.174 0.826 40 H 0.225 0.775 41 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -11.674 -3.879 25.550 28.358 hybrid contribution -0.871 -0.313 -1.555 1.810 sum -12.545 -4.192 23.995 27.400 Atomic orbital electron populations 1.22165 0.95230 1.02093 1.02423 1.21025 0.93716 0.97823 0.83478 0.89004 1.22114 0.98124 1.00888 0.96572 1.20620 0.90146 0.96008 0.90220 1.42709 1.05315 1.66069 1.26149 1.19070 0.82257 1.29256 1.06759 0.89331 1.24678 0.95609 1.00693 0.98244 1.69706 1.11742 1.48300 1.28558 0.86521 0.80875 0.79451 0.81516 1.21089 1.21738 1.20348 1.45929 1.65479 1.14738 1.08883 1.17079 0.77519 0.85726 0.82021 1.90805 1.51155 1.14870 1.84773 1.20140 1.06521 0.89270 0.95607 1.26482 1.06386 1.06862 0.96560 1.83771 1.58303 1.00206 1.14017 1.24759 1.02149 0.96494 0.90751 1.19023 1.10780 0.89886 0.95076 1.22743 1.06337 0.94698 0.98124 1.23925 1.04237 0.97576 0.83624 1.83955 1.64369 1.35995 1.22570 1.24459 0.97360 0.82398 0.98686 1.67004 1.13487 1.10915 1.24328 0.92480 0.92282 0.91403 0.91325 0.90144 0.95541 0.95474 0.80718 0.93082 0.75358 0.79142 0.82616 0.77468 0.76526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.85 9.48 37.16 0.35 -1.49 16 2 C 0.14 1.96 2.57 -67.93 -0.17 1.78 16 3 H 0.09 1.38 7.58 -51.93 -0.39 0.99 16 4 C -0.14 -2.06 4.87 -26.73 -0.13 -2.19 16 5 C 0.16 3.11 6.15 -4.05 -0.02 3.08 16 6 N -0.76 -18.34 5.41 -59.91 -0.32 -18.66 16 7 C -0.24 -7.08 10.47 -15.06 -0.16 -7.24 16 8 H 0.09 2.78 8.06 -52.49 -0.42 2.36 16 9 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 10 N -0.93 -29.83 13.97 55.49 0.78 -29.06 16 11 Si 0.89 22.27 27.74 -169.99 -4.71 17.56 16 12 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 13 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 14 H -0.28 -6.50 6.52 56.52 0.37 -6.13 16 15 N -0.70 -9.65 4.53 -54.93 -0.25 -9.90 16 16 C 0.59 8.86 7.76 -12.59 -0.10 8.76 16 17 O -0.54 -9.22 16.31 5.24 0.09 -9.14 16 18 C 0.02 0.27 6.64 -84.91 -0.56 -0.29 16 19 C -0.22 -2.43 10.56 29.61 0.31 -2.12 16 20 S 0.18 1.55 23.07 -107.50 -2.48 -0.93 16 21 C 0.13 1.47 7.46 -14.44 -0.11 1.37 16 22 C -0.14 -1.38 6.32 -103.25 -0.65 -2.03 16 23 C -0.20 -1.43 11.04 -37.48 -0.41 -1.85 16 24 C -0.03 -0.17 12.04 29.34 0.35 0.18 16 25 O -0.17 -1.50 10.54 6.86 0.07 -1.43 16 26 C 0.04 0.41 12.05 29.95 0.36 0.77 16 27 N -0.44 -5.61 10.03 -8.11 -0.08 -5.69 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.03 0.56 7.75 -51.93 -0.40 0.15 16 35 H 0.36 8.39 5.53 -40.82 -0.23 8.17 16 36 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 37 H 0.41 5.40 8.08 -40.82 -0.33 5.07 16 38 H 0.19 1.86 7.99 -52.48 -0.42 1.45 16 39 H 0.16 0.79 8.06 -52.49 -0.42 0.36 16 40 H 0.21 0.48 8.06 -52.48 -0.42 0.06 16 41 H 0.22 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 371.57 15.07 5.60 5.60 Total: -1.00 -35.68 371.57 -7.52 -43.21 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -5.17 Total: 9.72 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: -1.04 Total: -1.27 kcal Atomic # 7 Polarization: -63.44 SS G_CDS: 0.12 Total: -63.32 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.16 Total: -10.57 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.71 Total: 17.56 kcal Atomic # 16 Polarization: 1.55 SS G_CDS: -2.48 Total: -0.93 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.68 -7.52 -43.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699142864.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.608 kcal (2) G-P(sol) polarization free energy of solvation -35.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds