Wall clock time and date at job start Tue Mar 31 2020 19:19:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47154 * 2 1 4 4 C 1.53000 * 109.47164 * 240.00540 * 2 1 3 5 5 C 1.52994 * 109.47391 * 174.99924 * 4 2 1 6 6 N 1.46498 * 109.47268 * 179.97438 * 5 4 2 7 7 C 1.36943 * 120.00202 * 179.97438 * 6 5 4 8 8 H 1.07998 * 119.99506 * 0.02562 * 7 6 5 9 9 C 1.38809 * 120.00083 * 179.97438 * 7 6 5 10 10 N 1.31614 * 119.99853 * 179.97438 * 9 7 6 11 11 Si 1.86806 * 120.00080 * 0.02562 * 9 7 6 12 12 H 1.48501 * 109.46938 * 89.99497 * 11 9 7 13 13 H 1.48499 * 109.46971 * 209.99168 * 11 9 7 14 14 H 1.48497 * 109.47083 * 329.99723 * 11 9 7 15 15 N 1.46496 * 109.47415 * 120.00478 * 2 1 3 16 16 C 1.34779 * 119.99717 * 274.99978 * 15 2 1 17 17 O 1.21637 * 120.00180 * 0.02562 * 16 15 2 18 18 C 1.47268 * 119.99728 * 179.97438 * 16 15 2 19 19 C 1.35089 * 122.42978 * 179.97438 * 18 16 15 20 20 S 1.70999 * 109.14492 * 180.02562 * 19 18 16 21 21 C 1.75999 * 90.59342 * 0.02562 * 20 19 18 22 22 C 1.47870 * 125.32046 * 179.73670 * 21 20 19 23 23 C 1.46860 * 127.14196 * 359.73104 * 22 21 20 24 24 C 1.34302 * 106.00502 * 179.83419 * 23 22 21 25 25 O 1.34177 * 109.05571 * 0.43471 * 24 23 22 26 26 C 1.33998 * 110.80037 * 359.71414 * 25 24 23 27 27 N 1.29876 * 109.36014 * 359.97438 * 21 20 19 28 28 H 1.08995 * 109.46734 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46471 * 299.99685 * 1 2 3 30 30 H 1.09004 * 109.47275 * 59.99777 * 1 2 3 31 31 H 1.09004 * 109.47112 * 295.00013 * 4 2 1 32 32 H 1.09004 * 109.47361 * 54.99328 * 4 2 1 33 33 H 1.08997 * 109.47180 * 299.99715 * 5 4 2 34 34 H 1.09001 * 109.47397 * 59.99936 * 5 4 2 35 35 H 0.97003 * 120.00119 * 359.97438 * 6 5 4 36 36 H 0.97005 * 120.00281 * 180.02562 * 10 9 7 37 37 H 0.96999 * 120.00114 * 94.99654 * 15 2 1 38 38 H 1.08005 * 125.42652 * 0.05714 * 19 18 16 39 39 H 1.07993 * 126.99591 * 0.02562 * 23 22 21 40 40 H 1.08004 * 125.47439 * 180.14851 * 24 23 22 41 41 H 1.08000 * 125.78896 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5648 -0.6132 -1.3138 6 7 4.0532 -1.3042 -2.5097 7 6 5.3952 -1.3402 -2.7797 8 1 6.0936 -0.8595 -2.1107 9 6 5.8580 -1.9954 -3.9125 10 7 7.1478 -2.0295 -4.1722 11 14 4.6499 -2.8275 -5.0692 12 1 4.2146 -1.8609 -6.1092 13 1 5.3070 -3.9903 -5.7183 14 1 3.4680 -3.2924 -4.2998 15 7 2.0184 -0.6907 1.1961 16 6 2.1471 -0.0184 2.3571 17 8 1.8574 1.1617 2.4119 18 6 2.6376 -0.7128 3.5596 19 6 2.7859 -0.0871 4.7476 20 16 3.3728 -1.2051 5.9008 21 6 3.3850 -2.4791 4.6865 22 6 3.8102 -3.8763 4.9176 23 6 4.2989 -4.4581 6.1744 24 6 4.5589 -5.7487 5.9085 25 8 4.2841 -5.9941 4.6184 26 6 3.8356 -4.8884 4.0086 27 7 2.9670 -1.9989 3.5545 28 1 -0.3632 -1.0276 -0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.7517 -1.7714 -1.2058 32 1 1.6053 -0.2616 -2.1370 33 1 3.8532 0.4370 -1.3574 34 1 3.9995 -1.0728 -0.4261 35 1 3.4259 -1.7363 -3.1104 36 1 7.4712 -2.4871 -4.9641 37 1 2.2491 -1.6318 1.1524 38 1 2.5679 0.9533 4.9388 39 1 4.4210 -3.9521 7.1206 40 1 4.9338 -6.4716 6.6180 41 1 3.5441 -4.8132 2.9714 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699142864.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:07 Heat of formation + Delta-G solvation = 6.637919 kcal Electronic energy + Delta-G solvation = -25268.724585 eV Core-core repulsion = 21469.478470 eV Total energy + Delta-G solvation = -3799.246116 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.36312 -41.59226 -39.86705 -37.95802 -36.24481 -34.49054 -33.78629 -32.43768 -31.66190 -30.10920 -29.76780 -27.08139 -25.74695 -24.76249 -23.14536 -22.63435 -22.00612 -21.56736 -20.34623 -19.89073 -19.64851 -18.52901 -17.69408 -17.22834 -17.00394 -16.68220 -16.44131 -16.21478 -15.89677 -15.51933 -15.24812 -15.04651 -14.90531 -14.71224 -14.34443 -14.22629 -13.88719 -13.82367 -13.35613 -13.22111 -13.10480 -12.98050 -12.93584 -12.44160 -12.21353 -12.02329 -11.87762 -11.76483 -11.57348 -11.30773 -11.02433 -10.99741 -10.62573 -10.21482 -9.98129 -9.33684 -9.26100 -8.04744 -5.39922 -0.77315 0.08932 0.45687 0.47104 1.04157 1.37789 1.42931 1.50343 1.71078 2.08807 2.17253 2.31765 2.47920 2.77077 3.26306 3.41055 3.64651 3.83243 3.98167 3.99736 4.07798 4.11633 4.17548 4.23949 4.50269 4.54728 4.57755 4.72199 4.74535 4.82495 4.84059 4.96710 5.11433 5.15289 5.21263 5.29294 5.39319 5.48108 5.71706 6.06237 6.18630 6.22768 6.53244 7.05430 7.06598 7.79461 8.01962 9.17016 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.009119 B = 0.003161 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3069.880999 B = 8855.374586 C =10945.013875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.147 3.853 3 H 0.074 0.926 4 C -0.122 4.122 5 C 0.156 3.844 6 N -0.756 5.756 7 C -0.243 4.243 8 H 0.047 0.953 9 C -0.064 4.064 10 N -0.985 5.985 11 Si 0.963 3.037 12 H -0.276 1.276 13 H -0.294 1.294 14 H -0.245 1.245 15 N -0.697 5.697 16 C 0.589 3.411 17 O -0.569 6.569 18 C -0.007 4.007 19 C -0.230 4.230 20 S 0.259 5.741 21 C 0.115 3.885 22 C -0.162 4.162 23 C -0.208 4.208 24 C -0.019 4.019 25 O -0.185 6.185 26 C 0.030 3.970 27 N -0.463 5.463 28 H 0.069 0.931 29 H 0.049 0.951 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.096 0.904 33 H 0.012 0.988 34 H 0.018 0.982 35 H 0.369 0.631 36 H 0.259 0.741 37 H 0.413 0.587 38 H 0.199 0.801 39 H 0.178 0.822 40 H 0.248 0.752 41 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.941 -5.704 26.153 30.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.042 3.958 3 H 0.092 0.908 4 C -0.161 4.161 5 C 0.030 3.970 6 N -0.402 5.402 7 C -0.374 4.374 8 H 0.065 0.935 9 C -0.256 4.256 10 N -0.635 5.635 11 Si 0.789 3.211 12 H -0.202 1.202 13 H -0.221 1.221 14 H -0.170 1.170 15 N -0.347 5.347 16 C 0.373 3.627 17 O -0.449 6.449 18 C -0.143 4.143 19 C -0.373 4.373 20 S 0.519 5.481 21 C -0.161 4.161 22 C -0.167 4.167 23 C -0.228 4.228 24 C -0.085 4.085 25 O -0.080 6.080 26 C -0.044 4.044 27 N -0.179 5.179 28 H 0.088 0.912 29 H 0.068 0.932 30 H 0.103 0.897 31 H 0.103 0.897 32 H 0.115 0.885 33 H 0.030 0.970 34 H 0.036 0.964 35 H 0.203 0.797 36 H 0.068 0.932 37 H 0.250 0.750 38 H 0.216 0.784 39 H 0.195 0.805 40 H 0.264 0.736 41 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -13.691 -5.297 26.698 30.468 hybrid contribution -0.130 0.155 -1.721 1.733 sum -13.821 -5.142 24.977 29.005 Atomic orbital electron populations 1.22079 0.92992 1.03069 1.02803 1.20991 0.95318 0.96610 0.82855 0.90789 1.21980 0.93967 1.02277 0.97829 1.20723 0.93764 0.94394 0.88148 1.42646 1.03527 1.66462 1.27571 1.19005 0.83975 1.28397 1.06029 0.93501 1.25609 0.97740 1.01860 1.00351 1.69906 1.14413 1.49741 1.29457 0.85299 0.79007 0.77918 0.78881 1.20240 1.22072 1.16954 1.45954 1.65155 1.14817 1.08820 1.17376 0.77043 0.85494 0.82739 1.90770 1.52725 1.16051 1.85383 1.20006 1.08628 0.89960 0.95673 1.26782 1.05633 1.07930 0.96946 1.83413 1.56053 0.97389 1.11222 1.25106 1.01883 0.97721 0.91345 1.19290 1.11455 0.89474 0.96513 1.23043 1.06580 0.95123 0.98086 1.24750 1.02543 0.98186 0.82991 1.83960 1.64430 1.35868 1.23770 1.24590 0.97899 0.82765 0.99099 1.66964 1.14486 1.10776 1.25701 0.91163 0.93216 0.89704 0.89740 0.88548 0.96974 0.96404 0.79689 0.93196 0.75007 0.78358 0.80478 0.73604 0.76414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.20 9.48 71.98 0.68 -2.51 16 2 C 0.15 3.88 2.57 44.99 0.12 4.00 16 3 H 0.07 2.24 7.58 -2.39 -0.02 2.22 16 4 C -0.12 -3.42 4.87 30.59 0.15 -3.27 16 5 C 0.16 6.17 6.15 86.38 0.53 6.70 16 6 N -0.76 -36.17 5.41 -343.47 -1.86 -38.02 16 7 C -0.24 -14.44 10.47 84.03 0.88 -13.56 16 8 H 0.05 3.10 8.06 -2.91 -0.02 3.08 16 9 C -0.06 -3.86 5.50 84.86 0.47 -3.39 16 10 N -0.99 -64.41 13.97 21.65 0.30 -64.11 16 11 Si 0.96 45.44 27.74 68.60 1.90 47.34 16 12 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 13 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 14 H -0.25 -10.20 6.52 99.48 0.65 -9.55 16 15 N -0.70 -19.36 4.53 -445.94 -2.02 -21.38 16 16 C 0.59 18.03 7.76 86.62 0.67 18.71 16 17 O -0.57 -20.05 16.31 -4.15 -0.07 -20.12 16 18 C -0.01 -0.18 6.64 40.65 0.27 0.09 16 19 C -0.23 -4.98 10.56 67.09 0.71 -4.27 16 20 S 0.26 4.09 23.07 -56.49 -1.30 2.78 16 21 C 0.12 2.46 7.46 87.53 0.65 3.11 16 22 C -0.16 -3.02 6.32 -18.98 -0.12 -3.14 16 23 C -0.21 -2.59 11.04 23.63 0.26 -2.33 16 24 C -0.02 -0.20 12.04 66.92 0.81 0.61 16 25 O -0.19 -3.02 10.54 1.63 0.02 -3.00 16 26 C 0.03 0.55 12.05 67.31 0.81 1.36 16 27 N -0.46 -11.92 10.03 -179.57 -1.80 -13.72 16 28 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 31 H 0.08 2.14 8.14 -2.38 -0.02 2.13 16 32 H 0.10 2.44 8.14 -2.38 -0.02 2.42 16 33 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.02 0.75 7.75 -2.39 -0.02 0.73 16 35 H 0.37 16.28 5.53 -92.71 -0.51 15.77 16 36 H 0.26 16.02 8.31 -92.70 -0.77 15.25 16 37 H 0.41 10.92 8.08 -92.71 -0.75 10.18 16 38 H 0.20 3.82 7.99 -2.91 -0.02 3.79 16 39 H 0.18 1.27 8.06 -2.91 -0.02 1.25 16 40 H 0.25 0.25 8.06 -2.91 -0.02 0.23 16 41 H 0.22 3.62 8.06 -2.91 -0.02 3.59 16 Total: -1.00 -79.69 371.57 1.82 -77.87 By element: Atomic # 1 Polarization: 30.50 SS G_CDS: -0.24 Total: 30.26 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: 6.89 Total: 2.10 kcal Atomic # 7 Polarization: -131.86 SS G_CDS: -5.37 Total: -137.23 kcal Atomic # 8 Polarization: -23.07 SS G_CDS: -0.05 Total: -23.12 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 1.90 Total: 47.34 kcal Atomic # 16 Polarization: 4.09 SS G_CDS: -1.30 Total: 2.78 kcal Total: -79.69 1.82 -77.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699142864.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.509 kcal (2) G-P(sol) polarization free energy of solvation -79.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds