Wall clock time and date at job start Tue Mar 31 2020 19:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47085 * 2 1 4 4 C 1.53006 * 109.46919 * 119.99030 * 2 1 3 5 5 N 1.46503 * 109.47318 * 174.99733 * 4 2 1 6 6 C 1.46498 * 120.00609 * 270.00635 * 5 4 2 7 7 C 1.36933 * 119.99615 * 90.00132 * 5 4 2 8 8 H 1.08009 * 120.00277 * 336.80329 * 7 5 4 9 9 C 1.38809 * 119.99956 * 157.07280 * 7 5 4 10 10 N 1.31627 * 119.99860 * 156.22021 * 9 7 5 11 11 Si 1.86791 * 120.00045 * 336.22064 * 9 7 5 12 12 H 1.48498 * 109.47210 * 84.92428 * 11 9 7 13 13 H 1.48503 * 109.47171 * 204.92409 * 11 9 7 14 14 H 1.48498 * 109.47258 * 324.92097 * 11 9 7 15 15 N 1.46495 * 109.47474 * 239.99133 * 2 1 3 16 16 C 1.34782 * 119.99982 * 85.00360 * 15 2 1 17 17 O 1.21496 * 119.99498 * 0.02562 * 16 15 2 18 18 C 1.48345 * 119.99933 * 180.02562 * 16 15 2 19 19 C 1.41708 * 126.80821 * 179.70516 * 18 16 15 20 20 C 1.37156 * 103.79591 * 179.89327 * 19 18 16 21 21 C 1.47031 * 126.86029 * 180.12210 * 20 19 18 22 22 C 1.36195 * 125.33784 * 179.97438 * 21 20 19 23 23 C 1.37715 * 114.44253 * 179.79301 * 22 21 20 24 24 C 1.33737 * 115.19300 * 0.49578 * 23 22 21 25 25 S 1.75829 * 109.95990 * 359.73281 * 24 23 22 26 26 O 1.34567 * 106.28455 * 0.36659 * 20 19 18 27 27 N 1.20876 * 111.69478 * 359.75247 * 26 20 19 28 28 H 1.08999 * 109.47085 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.47343 * 300.00900 * 1 2 3 30 30 H 1.08995 * 109.46801 * 60.00899 * 1 2 3 31 31 H 1.09001 * 109.46610 * 55.00486 * 4 2 1 32 32 H 1.08996 * 109.47687 * 295.00268 * 4 2 1 33 33 H 1.08993 * 109.47056 * 273.89733 * 6 5 4 34 34 H 1.09007 * 109.46937 * 33.89622 * 6 5 4 35 35 H 1.08994 * 109.47440 * 153.88933 * 6 5 4 36 36 H 0.97002 * 119.99404 * 180.02562 * 10 9 7 37 37 H 0.97002 * 120.00324 * 265.00236 * 15 2 1 38 38 H 1.08002 * 128.10177 * 0.02996 * 19 18 16 39 39 H 1.07999 * 122.77468 * 359.95557 * 22 21 20 40 40 H 1.08001 * 122.40128 * 180.20721 * 23 22 21 41 41 H 1.08003 * 125.01811 * 179.72976 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2494 5 7 3.5000 -0.8263 1.1908 6 6 4.1259 -1.9919 0.5616 7 6 4.2798 0.1649 1.7241 8 1 3.8802 1.1613 1.8432 9 6 5.5857 -0.1093 2.1066 10 7 6.4708 0.8628 2.1700 11 14 6.0868 -1.8579 2.5314 12 1 6.4472 -2.5855 1.2881 13 1 7.2570 -1.8294 3.4452 14 1 4.9545 -2.5491 3.1988 15 7 2.0184 -0.6907 -1.1960 16 6 2.1472 -0.0185 -2.3571 17 8 1.8587 1.1604 -2.4116 18 6 2.6413 -0.7181 -3.5683 19 6 2.8256 -0.1576 -4.8567 20 6 3.2949 -1.2065 -5.6056 21 6 3.6577 -1.1804 -7.0302 22 6 4.1221 -2.2430 -7.7445 23 6 4.3884 -1.9678 -9.0673 24 6 4.1613 -0.7044 -9.4428 25 16 3.5671 0.2301 -8.0772 26 8 3.3517 -2.2657 -4.7776 27 7 2.9887 -1.9797 -3.6607 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8898 30 1 -0.3633 0.5137 -0.8900 31 1 1.6053 -1.7196 1.2954 32 1 1.7516 -0.1581 2.1371 33 1 4.2191 -2.7938 1.2939 34 1 3.5091 -2.3302 -0.2711 35 1 5.1149 -1.7190 0.1937 36 1 7.3835 0.6710 2.4369 37 1 2.2491 -1.6319 -1.1523 38 1 2.6420 0.8582 -5.1741 39 1 4.2669 -3.2210 -7.3100 40 1 4.7585 -2.7172 -9.7512 41 1 4.3197 -0.3157 -10.4380 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699452896.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:42 Heat of formation + Delta-G solvation = 73.203353 kcal Electronic energy + Delta-G solvation = -25970.545224 eV Core-core repulsion = 22174.185602 eV Total energy + Delta-G solvation = -3796.359622 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -46.24068 -40.96930 -38.70455 -38.41219 -36.01463 -35.31988 -34.08128 -33.53454 -32.11086 -29.70213 -28.39932 -27.68588 -26.44841 -25.38206 -24.12615 -23.56742 -22.12453 -21.62963 -20.44798 -19.42136 -19.04280 -18.98133 -18.14947 -17.53741 -17.30460 -17.03385 -16.38044 -16.28975 -15.95694 -15.50491 -15.11481 -14.91701 -14.75733 -14.44029 -14.32370 -14.20634 -13.83355 -13.79515 -13.59308 -13.40606 -13.15332 -12.87170 -12.69525 -12.48617 -12.28615 -12.15637 -11.96001 -11.81924 -11.72402 -11.58450 -11.46161 -11.44685 -10.78833 -10.21145 -9.53441 -9.35850 -9.03201 -8.19865 -5.50014 -0.74950 0.02008 0.28079 0.80628 0.93970 1.30161 1.39441 1.48812 1.75049 1.83276 1.90809 2.01824 2.40290 2.71372 2.98239 3.23173 3.33853 3.66116 3.87776 3.99388 4.07083 4.21170 4.24716 4.34059 4.43366 4.47695 4.59108 4.59704 4.63852 4.68440 4.74170 4.87818 4.96479 5.05946 5.07757 5.25823 5.29931 5.41632 5.42876 5.79831 6.08473 6.26099 6.76471 6.85825 6.95334 7.58898 7.91173 9.00052 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.014410 B = 0.002908 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1942.668348 B = 9626.046758 C =10531.345014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.121 3.879 3 H 0.051 0.949 4 C 0.140 3.860 5 N -0.619 5.619 6 C 0.105 3.895 7 C -0.252 4.252 8 H 0.050 0.950 9 C -0.037 4.037 10 N -0.956 5.956 11 Si 0.953 3.047 12 H -0.273 1.273 13 H -0.313 1.313 14 H -0.264 1.264 15 N -0.684 5.684 16 C 0.592 3.408 17 O -0.559 6.559 18 C -0.031 4.031 19 C -0.184 4.184 20 C 0.058 3.942 21 C -0.181 4.181 22 C -0.085 4.085 23 C -0.146 4.146 24 C -0.187 4.187 25 S 0.163 5.837 26 O 0.142 5.858 27 N -0.338 5.338 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.046 0.954 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.022 0.978 34 H 0.061 0.939 35 H 0.034 0.966 36 H 0.261 0.739 37 H 0.407 0.593 38 H 0.189 0.811 39 H 0.162 0.838 40 H 0.177 0.823 41 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.529 -9.285 -25.191 28.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.015 3.985 3 H 0.069 0.931 4 C 0.014 3.986 5 N -0.343 5.343 6 C -0.040 4.040 7 C -0.381 4.381 8 H 0.068 0.932 9 C -0.232 4.232 10 N -0.602 5.602 11 Si 0.782 3.218 12 H -0.199 1.199 13 H -0.242 1.242 14 H -0.189 1.189 15 N -0.336 5.336 16 C 0.376 3.624 17 O -0.437 6.437 18 C -0.188 4.188 19 C -0.208 4.208 20 C -0.006 4.006 21 C -0.299 4.299 22 C -0.119 4.119 23 C -0.175 4.175 24 C -0.324 4.324 25 S 0.429 5.571 26 O 0.064 5.936 27 N -0.037 5.037 28 H 0.096 0.904 29 H 0.103 0.897 30 H 0.065 0.935 31 H 0.101 0.899 32 H 0.095 0.905 33 H 0.039 0.961 34 H 0.079 0.921 35 H 0.052 0.948 36 H 0.070 0.930 37 H 0.245 0.755 38 H 0.207 0.793 39 H 0.179 0.821 40 H 0.194 0.806 41 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -10.052 -7.864 -23.985 27.169 hybrid contribution 1.258 -1.275 0.126 1.796 sum -8.794 -9.140 -23.859 27.021 Atomic orbital electron populations 1.22026 0.92604 1.03284 1.02661 1.21843 0.95029 0.96830 0.84792 0.93058 1.21364 0.81898 1.00199 0.95092 1.44192 1.02227 1.21801 1.66068 1.21468 0.97608 0.89077 0.95820 1.18792 0.94500 0.89733 1.35099 0.93223 1.25840 0.96128 1.00904 1.00308 1.70040 1.03359 1.34576 1.52200 0.85932 0.76522 0.81542 0.77795 1.19906 1.24248 1.18878 1.45950 1.64654 1.14308 1.08680 1.17108 0.77598 0.85550 0.82164 1.90747 1.52111 1.15871 1.84993 1.23264 1.06776 0.91480 0.97246 1.22710 1.05573 1.02085 0.90416 1.21510 1.01403 0.86024 0.91704 1.21863 1.15650 1.01024 0.91358 1.21104 0.97079 0.99386 0.94284 1.20343 1.03771 0.97708 0.95638 1.26444 1.05175 0.97324 1.03417 1.84484 1.63069 1.09679 0.99918 1.84866 1.61005 1.34340 1.13433 1.74119 1.13901 1.15964 0.99670 0.90402 0.89733 0.93532 0.89875 0.90462 0.96068 0.92090 0.94775 0.93029 0.75497 0.79338 0.82065 0.80622 0.78107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.88 9.48 71.98 0.68 -3.20 16 2 C 0.12 4.23 2.88 44.99 0.13 4.36 16 3 H 0.05 2.23 7.58 -2.39 -0.02 2.21 16 4 C 0.14 5.02 5.32 86.38 0.46 5.48 16 5 N -0.62 -28.67 2.59 -726.93 -1.88 -30.55 16 6 C 0.10 4.43 8.00 127.77 1.02 5.45 16 7 C -0.25 -14.47 10.04 84.03 0.84 -13.63 16 8 H 0.05 3.15 8.06 -2.91 -0.02 3.13 16 9 C -0.04 -2.21 5.17 84.86 0.44 -1.77 16 10 N -0.96 -61.77 13.97 21.65 0.30 -61.47 16 11 Si 0.95 47.27 24.04 68.60 1.65 48.92 16 12 H -0.27 -12.77 6.37 99.48 0.63 -12.14 16 13 H -0.31 -15.88 7.11 99.48 0.71 -15.17 16 14 H -0.26 -12.36 6.90 99.48 0.69 -11.67 16 15 N -0.68 -23.86 4.51 -444.92 -2.01 -25.87 16 16 C 0.59 22.41 7.81 86.93 0.68 23.08 16 17 O -0.56 -24.35 16.61 -3.70 -0.06 -24.41 16 18 C -0.03 -1.01 7.17 42.79 0.31 -0.70 16 19 C -0.18 -5.14 10.77 22.87 0.25 -4.89 16 20 C 0.06 1.39 7.28 24.32 0.18 1.57 16 21 C -0.18 -3.30 6.45 24.10 0.16 -3.15 16 22 C -0.08 -1.15 10.17 21.67 0.22 -0.93 16 23 C -0.15 -1.32 10.15 21.12 0.21 -1.11 16 24 C -0.19 -1.62 11.21 66.80 0.75 -0.87 16 25 S 0.16 2.32 23.11 -56.49 -1.31 1.01 16 26 O 0.14 3.70 11.21 66.59 0.75 4.45 16 27 N -0.34 -10.25 11.81 -48.87 -0.58 -10.82 16 28 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.08 2.40 8.07 -2.39 -0.02 2.38 16 32 H 0.08 2.75 8.04 -2.39 -0.02 2.73 16 33 H 0.02 0.87 5.74 -2.39 -0.01 0.86 16 34 H 0.06 2.14 5.55 -2.38 -0.01 2.12 16 35 H 0.03 1.62 5.79 -2.39 -0.01 1.60 16 36 H 0.26 16.03 8.31 -92.71 -0.77 15.25 16 37 H 0.41 12.98 5.86 -92.71 -0.54 12.44 16 38 H 0.19 4.78 8.06 -2.91 -0.02 4.75 16 39 H 0.16 1.76 8.06 -2.91 -0.02 1.73 16 40 H 0.18 0.60 8.06 -2.91 -0.02 0.58 16 41 H 0.20 0.48 8.06 -2.91 -0.02 0.45 16 Total: -1.00 -76.49 359.79 3.63 -72.86 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: 0.44 Total: 16.18 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: 6.33 Total: 9.71 kcal Atomic # 7 Polarization: -124.56 SS G_CDS: -4.16 Total: -128.72 kcal Atomic # 8 Polarization: -20.65 SS G_CDS: 0.68 Total: -19.97 kcal Atomic # 14 Polarization: 47.27 SS G_CDS: 1.65 Total: 48.92 kcal Atomic # 16 Polarization: 2.32 SS G_CDS: -1.31 Total: 1.01 kcal Total: -76.49 3.63 -72.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699452896.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.067 kcal (2) G-P(sol) polarization free energy of solvation -76.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds