Wall clock time and date at job start Tue Mar 31 2020 19:22:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.47269 * 2 1 4 4 C 1.53000 * 109.46845 * 239.99844 * 2 1 3 5 5 N 1.46508 * 109.46676 * 185.00157 * 4 2 1 6 6 C 1.46495 * 119.99845 * 269.99571 * 5 4 2 7 7 C 1.36940 * 119.99963 * 90.00311 * 5 4 2 8 8 H 1.08000 * 119.99871 * 20.30105 * 7 5 4 9 9 C 1.38808 * 119.99708 * 200.30284 * 7 5 4 10 10 N 1.31618 * 120.00091 * 15.01226 * 9 7 5 11 11 Si 1.86800 * 119.99671 * 195.01427 * 9 7 5 12 12 H 1.48500 * 109.47122 * 85.00186 * 11 9 7 13 13 H 1.48507 * 109.46988 * 205.00249 * 11 9 7 14 14 H 1.48500 * 109.47264 * 325.00121 * 11 9 7 15 15 N 1.46502 * 109.47082 * 119.99958 * 2 1 3 16 16 C 1.34777 * 119.99809 * 274.72327 * 15 2 1 17 17 O 1.21486 * 120.00383 * 0.27952 * 16 15 2 18 18 C 1.48353 * 119.99822 * 180.27117 * 16 15 2 19 19 C 1.41701 * 126.81077 * 179.71045 * 18 16 15 20 20 C 1.37155 * 103.79733 * 179.89545 * 19 18 16 21 21 C 1.47024 * 126.85949 * 180.11600 * 20 19 18 22 22 C 1.36203 * 125.33785 * 179.97438 * 21 20 19 23 23 C 1.37711 * 114.44671 * 179.79413 * 22 21 20 24 24 C 1.33739 * 115.18857 * 0.50022 * 23 22 21 25 25 S 1.75814 * 109.96325 * 359.72655 * 24 23 22 26 26 O 1.34571 * 106.28142 * 0.36656 * 20 19 18 27 27 N 1.20867 * 111.69466 * 359.75077 * 26 20 19 28 28 H 1.08996 * 109.46832 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46863 * 300.00403 * 1 2 3 30 30 H 1.08997 * 109.46786 * 60.00117 * 1 2 3 31 31 H 1.09000 * 109.47225 * 305.00057 * 4 2 1 32 32 H 1.08992 * 109.47360 * 65.00384 * 4 2 1 33 33 H 1.09004 * 109.46915 * 95.10786 * 6 5 4 34 34 H 1.08996 * 109.47174 * 215.10592 * 6 5 4 35 35 H 1.08992 * 109.47345 * 335.11135 * 6 5 4 36 36 H 0.97004 * 119.99997 * 179.97438 * 10 9 7 37 37 H 0.97002 * 119.99878 * 94.99605 * 15 2 1 38 38 H 1.07997 * 128.10159 * 0.02562 * 19 18 16 39 39 H 1.08004 * 122.77375 * 359.96608 * 22 21 20 40 40 H 1.07995 * 122.40605 * 180.20255 * 23 22 21 41 41 H 1.08004 * 125.01422 * 179.72928 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5001 -0.8264 -1.1905 6 6 4.3343 0.2339 -1.7613 7 6 4.0850 -1.9160 -0.6022 8 1 3.5229 -2.8299 -0.4789 9 6 5.4003 -1.8457 -0.1644 10 7 5.9903 -0.6759 -0.0380 11 14 6.3331 -3.4114 0.2455 12 1 6.9257 -3.9736 -0.9947 13 1 7.4147 -3.1037 1.2155 14 1 5.4006 -4.4015 0.8415 15 7 2.0184 -0.6906 1.1962 16 6 2.1524 -0.0169 2.3558 17 8 1.8634 1.1619 2.4104 18 6 2.6526 -0.7147 3.5656 19 6 2.8536 -0.1498 4.8494 20 6 3.3173 -1.2000 5.6000 21 6 3.6874 -1.1718 7.0226 22 6 4.1450 -2.2361 7.7388 23 6 4.4289 -1.9562 9.0570 24 6 4.2032 -0.6925 9.4320 25 16 3.6015 0.2399 8.0683 26 8 3.3711 -2.2601 4.7728 27 7 3.0020 -1.9758 3.6575 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.6053 -1.7198 -1.2951 32 1 1.7517 -0.1584 -2.1369 33 1 4.6152 0.9370 -0.9771 34 1 5.2330 -0.2046 -2.1949 35 1 3.7756 0.7584 -2.5363 36 1 6.9094 -0.6268 0.2683 37 1 2.2490 -1.6318 1.1526 38 1 2.6802 0.8687 5.1640 39 1 4.2770 -3.2176 7.3079 40 1 4.8023 -2.7047 9.7401 41 1 4.3664 -0.3024 10.4258 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699452899.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:47 Heat of formation + Delta-G solvation = 87.867512 kcal Electronic energy + Delta-G solvation = -26425.351008 eV Core-core repulsion = 22629.627271 eV Total energy + Delta-G solvation = -3795.723736 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -44.84139 -39.14356 -37.96497 -36.37081 -34.05480 -33.87088 -32.83917 -31.26978 -30.01839 -28.75249 -26.19805 -25.61075 -25.10101 -24.32354 -22.71318 -21.77453 -20.75621 -19.83986 -19.18093 -18.53082 -17.62917 -16.85022 -16.59791 -16.29205 -15.60312 -15.39517 -14.87164 -14.39381 -14.11737 -13.71911 -13.50781 -13.49093 -13.43082 -13.09404 -12.88967 -12.84846 -12.54297 -12.22408 -11.94927 -11.42725 -11.41629 -11.30575 -11.10096 -10.82952 -10.69093 -10.44393 -10.40755 -10.31505 -10.19129 -10.03833 -9.81466 -9.66833 -8.80924 -8.55346 -8.42578 -8.38015 -6.80780 -5.73767 -3.17914 0.17677 1.08148 1.50885 1.62638 1.87765 2.62688 3.08459 3.37869 3.44600 3.45463 3.45849 3.75028 4.21801 4.47293 4.50386 4.74498 4.98447 5.18947 5.20814 5.29431 5.33769 5.45982 5.51488 5.64077 5.73220 5.83456 5.91002 5.95782 5.99239 6.10198 6.14079 6.21365 6.42248 6.47690 6.72503 6.84282 7.14026 7.37131 7.71032 7.79308 8.01361 8.27608 8.35668 8.72988 9.20612 9.84956 10.33211 11.30533 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.012697 B = 0.003670 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2204.697034 B = 7628.468197 C = 9051.379800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.116 3.884 3 H 0.080 0.920 4 C 0.141 3.859 5 N -0.599 5.599 6 C 0.163 3.837 7 C -0.259 4.259 8 H 0.067 0.933 9 C 0.010 3.990 10 N -0.898 5.898 11 Si 0.895 3.105 12 H -0.287 1.287 13 H -0.292 1.292 14 H -0.277 1.277 15 N -0.667 5.667 16 C 0.599 3.401 17 O -0.544 6.544 18 C -0.006 4.006 19 C -0.164 4.164 20 C 0.023 3.977 21 C -0.129 4.129 22 C -0.107 4.107 23 C -0.133 4.133 24 C -0.214 4.214 25 S 0.171 5.829 26 O 0.135 5.865 27 N -0.313 5.313 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.062 0.938 31 H 0.050 0.950 32 H 0.055 0.945 33 H 0.028 0.972 34 H 0.043 0.957 35 H -0.002 1.002 36 H 0.252 0.748 37 H 0.411 0.589 38 H 0.180 0.820 39 H 0.151 0.849 40 H 0.146 0.854 41 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.880 -0.366 15.907 17.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.008 3.992 3 H 0.098 0.902 4 C 0.013 3.987 5 N -0.321 5.321 6 C 0.018 3.982 7 C -0.389 4.389 8 H 0.085 0.915 9 C -0.189 4.189 10 N -0.543 5.543 11 Si 0.725 3.275 12 H -0.215 1.215 13 H -0.219 1.219 14 H -0.202 1.202 15 N -0.316 5.316 16 C 0.381 3.619 17 O -0.421 6.421 18 C -0.164 4.164 19 C -0.187 4.187 20 C -0.041 4.041 21 C -0.248 4.248 22 C -0.139 4.139 23 C -0.163 4.163 24 C -0.351 4.351 25 S 0.436 5.564 26 O 0.056 5.944 27 N -0.012 5.012 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.047 0.953 34 H 0.062 0.938 35 H 0.016 0.984 36 H 0.062 0.938 37 H 0.248 0.752 38 H 0.197 0.803 39 H 0.168 0.832 40 H 0.164 0.836 41 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -7.334 1.058 14.786 16.539 hybrid contribution 1.329 -1.962 0.941 2.550 sum -6.004 -0.905 15.727 16.858 Atomic orbital electron populations 1.22161 0.96512 1.01477 1.01751 1.21984 0.92069 0.98504 0.86598 0.90181 1.21205 0.86026 0.98026 0.93456 1.43933 0.98873 1.22718 1.66540 1.20799 0.92929 0.90406 0.94032 1.19068 0.95969 0.89903 1.33920 0.91484 1.24903 0.98523 0.96182 0.99296 1.70093 1.12749 1.21820 1.49596 0.86414 0.79986 0.83389 0.77737 1.21456 1.21853 1.20222 1.45633 1.63235 1.14708 1.08043 1.16743 0.77940 0.85610 0.81566 1.90718 1.52073 1.14698 1.84646 1.23433 1.05114 0.90666 0.97180 1.22576 1.04091 1.00842 0.91228 1.21217 1.04406 0.87559 0.90967 1.21805 1.11552 0.98996 0.92417 1.20748 0.99935 0.99554 0.93632 1.20021 1.03444 0.96787 0.96081 1.25926 1.08249 0.97931 1.02992 1.84308 1.62781 1.09982 0.99349 1.84943 1.61453 1.34087 1.13917 1.74230 1.12100 1.16726 0.98099 0.92863 0.92865 0.91918 0.93195 0.92625 0.95321 0.93817 0.98370 0.93808 0.75225 0.80269 0.83170 0.83611 0.81264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.45 9.49 37.16 0.35 -2.10 16 2 C 0.12 2.22 2.88 -67.93 -0.20 2.02 16 3 H 0.08 1.73 7.57 -51.93 -0.39 1.34 16 4 C 0.14 2.77 5.36 -4.04 -0.02 2.75 16 5 N -0.60 -14.57 2.82 -181.12 -0.51 -15.08 16 6 C 0.16 4.03 9.02 59.84 0.54 4.57 16 7 C -0.26 -6.83 8.02 -15.06 -0.12 -6.96 16 8 H 0.07 1.73 7.86 -52.49 -0.41 1.32 16 9 C 0.01 0.29 5.06 -17.43 -0.09 0.20 16 10 N -0.90 -26.22 10.67 55.49 0.59 -25.62 16 11 Si 0.89 22.06 29.58 -169.99 -5.03 17.03 16 12 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 13 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 14 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 15 N -0.67 -13.82 4.48 -54.58 -0.24 -14.07 16 16 C 0.60 12.83 7.82 -12.10 -0.09 12.73 16 17 O -0.54 -12.51 16.60 5.38 0.09 -12.42 16 18 C -0.01 -0.11 7.17 -82.66 -0.59 -0.70 16 19 C -0.16 -2.69 10.77 -38.65 -0.42 -3.11 16 20 C 0.02 0.35 7.28 -36.42 -0.26 0.08 16 21 C -0.13 -1.56 6.45 -36.75 -0.24 -1.80 16 22 C -0.11 -1.09 10.17 -40.51 -0.41 -1.50 16 23 C -0.13 -1.08 10.15 -41.35 -0.42 -1.50 16 24 C -0.21 -1.64 11.21 29.15 0.33 -1.31 16 25 S 0.17 1.63 23.11 -107.50 -2.48 -0.85 16 26 O 0.13 2.27 11.21 15.75 0.18 2.45 16 27 N -0.31 -6.06 11.81 33.36 0.39 -5.67 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.05 0.93 8.03 -51.93 -0.42 0.51 16 32 H 0.06 0.98 7.86 -51.93 -0.41 0.57 16 33 H 0.03 0.78 7.40 -51.93 -0.38 0.40 16 34 H 0.04 1.15 7.21 -51.93 -0.37 0.78 16 35 H 0.00 -0.05 7.83 -51.93 -0.41 -0.46 16 36 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 37 H 0.41 8.74 7.15 -40.82 -0.29 8.45 16 38 H 0.18 2.59 8.06 -52.49 -0.42 2.16 16 39 H 0.15 1.38 8.06 -52.48 -0.42 0.95 16 40 H 0.15 0.82 8.06 -52.49 -0.42 0.40 16 41 H 0.17 0.82 8.06 -52.48 -0.42 0.40 16 LS Contribution 368.35 15.07 5.55 5.55 Total: -1.00 -32.01 368.35 -8.29 -40.31 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -5.18 Total: 4.99 kcal Atomic # 6 Polarization: 5.03 SS G_CDS: -1.64 Total: 3.39 kcal Atomic # 7 Polarization: -60.67 SS G_CDS: 0.23 Total: -60.44 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.27 Total: -9.97 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.03 Total: 17.03 kcal Atomic # 16 Polarization: 1.63 SS G_CDS: -2.48 Total: -0.85 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.01 -8.29 -40.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699452899.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.173 kcal (2) G-P(sol) polarization free energy of solvation -32.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds