Wall clock time and date at job start Tue Mar 31 2020 19:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.47269 * 2 1 4 4 C 1.53000 * 109.46845 * 239.99844 * 2 1 3 5 5 N 1.46508 * 109.46676 * 185.00157 * 4 2 1 6 6 C 1.46495 * 119.99845 * 269.99571 * 5 4 2 7 7 C 1.36940 * 119.99963 * 90.00311 * 5 4 2 8 8 H 1.08000 * 119.99871 * 20.30105 * 7 5 4 9 9 C 1.38808 * 119.99708 * 200.30284 * 7 5 4 10 10 N 1.31618 * 120.00091 * 15.01226 * 9 7 5 11 11 Si 1.86800 * 119.99671 * 195.01427 * 9 7 5 12 12 H 1.48500 * 109.47122 * 85.00186 * 11 9 7 13 13 H 1.48507 * 109.46988 * 205.00249 * 11 9 7 14 14 H 1.48500 * 109.47264 * 325.00121 * 11 9 7 15 15 N 1.46502 * 109.47082 * 119.99958 * 2 1 3 16 16 C 1.34777 * 119.99809 * 274.72327 * 15 2 1 17 17 O 1.21486 * 120.00383 * 0.27952 * 16 15 2 18 18 C 1.48353 * 119.99822 * 180.27117 * 16 15 2 19 19 C 1.41701 * 126.81077 * 179.71045 * 18 16 15 20 20 C 1.37155 * 103.79733 * 179.89545 * 19 18 16 21 21 C 1.47024 * 126.85949 * 180.11600 * 20 19 18 22 22 C 1.36203 * 125.33785 * 179.97438 * 21 20 19 23 23 C 1.37711 * 114.44671 * 179.79413 * 22 21 20 24 24 C 1.33739 * 115.18857 * 0.50022 * 23 22 21 25 25 S 1.75814 * 109.96325 * 359.72655 * 24 23 22 26 26 O 1.34571 * 106.28142 * 0.36656 * 20 19 18 27 27 N 1.20867 * 111.69466 * 359.75077 * 26 20 19 28 28 H 1.08996 * 109.46832 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46863 * 300.00403 * 1 2 3 30 30 H 1.08997 * 109.46786 * 60.00117 * 1 2 3 31 31 H 1.09000 * 109.47225 * 305.00057 * 4 2 1 32 32 H 1.08992 * 109.47360 * 65.00384 * 4 2 1 33 33 H 1.09004 * 109.46915 * 95.10786 * 6 5 4 34 34 H 1.08996 * 109.47174 * 215.10592 * 6 5 4 35 35 H 1.08992 * 109.47345 * 335.11135 * 6 5 4 36 36 H 0.97004 * 119.99997 * 179.97438 * 10 9 7 37 37 H 0.97002 * 119.99878 * 94.99605 * 15 2 1 38 38 H 1.07997 * 128.10159 * 0.02562 * 19 18 16 39 39 H 1.08004 * 122.77375 * 359.96608 * 22 21 20 40 40 H 1.07995 * 122.40605 * 180.20255 * 23 22 21 41 41 H 1.08004 * 125.01422 * 179.72928 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5001 -0.8264 -1.1905 6 6 4.3343 0.2339 -1.7613 7 6 4.0850 -1.9160 -0.6022 8 1 3.5229 -2.8299 -0.4789 9 6 5.4003 -1.8457 -0.1644 10 7 5.9903 -0.6759 -0.0380 11 14 6.3331 -3.4114 0.2455 12 1 6.9257 -3.9736 -0.9947 13 1 7.4147 -3.1037 1.2155 14 1 5.4006 -4.4015 0.8415 15 7 2.0184 -0.6906 1.1962 16 6 2.1524 -0.0169 2.3558 17 8 1.8634 1.1619 2.4104 18 6 2.6526 -0.7147 3.5656 19 6 2.8536 -0.1498 4.8494 20 6 3.3173 -1.2000 5.6000 21 6 3.6874 -1.1718 7.0226 22 6 4.1450 -2.2361 7.7388 23 6 4.4289 -1.9562 9.0570 24 6 4.2032 -0.6925 9.4320 25 16 3.6015 0.2399 8.0683 26 8 3.3711 -2.2601 4.7728 27 7 3.0020 -1.9758 3.6575 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.6053 -1.7198 -1.2951 32 1 1.7517 -0.1584 -2.1369 33 1 4.6152 0.9370 -0.9771 34 1 5.2330 -0.2046 -2.1949 35 1 3.7756 0.7584 -2.5363 36 1 6.9094 -0.6268 0.2683 37 1 2.2490 -1.6318 1.1526 38 1 2.6802 0.8687 5.1640 39 1 4.2770 -3.2176 7.3079 40 1 4.8023 -2.7047 9.7401 41 1 4.3664 -0.3024 10.4258 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699452899.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:46 Heat of formation + Delta-G solvation = 68.186719 kcal Electronic energy + Delta-G solvation = -26426.204431 eV Core-core repulsion = 22629.627271 eV Total energy + Delta-G solvation = -3796.577160 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -46.20270 -40.79210 -38.71108 -38.13618 -35.84684 -35.25649 -34.04230 -33.14044 -31.63401 -29.68767 -28.07775 -27.42288 -26.38394 -25.35440 -24.05669 -23.49125 -22.08953 -21.37886 -20.41769 -19.41592 -19.00765 -18.75356 -18.01533 -17.53858 -17.10806 -16.81938 -16.33137 -16.03637 -15.59233 -15.38941 -15.05774 -14.91323 -14.55811 -14.43912 -14.21077 -13.92012 -13.59575 -13.46966 -13.38507 -13.15982 -12.92332 -12.76651 -12.63617 -12.58293 -12.19723 -12.04032 -12.01530 -11.83183 -11.75378 -11.65447 -11.42646 -11.33979 -10.63750 -10.02926 -9.53790 -9.35212 -8.83142 -7.83539 -5.27754 -0.73302 0.11320 0.28022 0.82511 0.93616 1.41568 1.42855 1.49210 1.81827 1.87314 1.96670 2.19334 2.48551 2.83513 3.28462 3.33467 3.66745 3.71519 3.99541 4.04651 4.14412 4.21115 4.38262 4.46257 4.47940 4.60212 4.64874 4.72161 4.80271 4.86122 4.95739 5.05384 5.11719 5.25259 5.30753 5.34697 5.41791 5.55149 5.61634 5.71297 6.28930 6.43061 6.86188 7.07848 7.13801 7.86222 8.29660 9.19718 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.012697 B = 0.003670 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2204.697034 B = 7628.468197 C = 9051.379800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.117 3.883 3 H 0.050 0.950 4 C 0.140 3.860 5 N -0.612 5.612 6 C 0.177 3.823 7 C -0.247 4.247 8 H 0.075 0.925 9 C -0.043 4.043 10 N -0.932 5.932 11 Si 0.946 3.054 12 H -0.284 1.284 13 H -0.305 1.305 14 H -0.266 1.266 15 N -0.669 5.669 16 C 0.591 3.409 17 O -0.569 6.569 18 C -0.030 4.030 19 C -0.183 4.183 20 C 0.050 3.950 21 C -0.180 4.180 22 C -0.089 4.089 23 C -0.145 4.145 24 C -0.186 4.186 25 S 0.168 5.832 26 O 0.137 5.863 27 N -0.339 5.339 28 H 0.069 0.931 29 H 0.042 0.958 30 H 0.090 0.910 31 H 0.067 0.933 32 H 0.084 0.916 33 H -0.007 1.007 34 H 0.018 0.982 35 H 0.034 0.966 36 H 0.242 0.758 37 H 0.408 0.592 38 H 0.192 0.808 39 H 0.157 0.843 40 H 0.177 0.823 41 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.757 -1.524 17.684 19.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.010 3.990 3 H 0.069 0.931 4 C 0.013 3.987 5 N -0.334 5.334 6 C 0.032 3.968 7 C -0.377 4.377 8 H 0.093 0.907 9 C -0.238 4.238 10 N -0.579 5.579 11 Si 0.776 3.224 12 H -0.211 1.211 13 H -0.232 1.232 14 H -0.191 1.191 15 N -0.317 5.317 16 C 0.375 3.625 17 O -0.449 6.449 18 C -0.187 4.187 19 C -0.206 4.206 20 C -0.015 4.015 21 C -0.298 4.298 22 C -0.123 4.123 23 C -0.174 4.174 24 C -0.322 4.322 25 S 0.433 5.567 26 O 0.058 5.942 27 N -0.038 5.038 28 H 0.088 0.912 29 H 0.061 0.939 30 H 0.109 0.891 31 H 0.085 0.915 32 H 0.102 0.898 33 H 0.011 0.989 34 H 0.037 0.963 35 H 0.052 0.948 36 H 0.051 0.949 37 H 0.244 0.756 38 H 0.209 0.791 39 H 0.175 0.825 40 H 0.195 0.805 41 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -8.264 -0.120 16.531 18.482 hybrid contribution 1.584 -1.619 0.565 2.334 sum -6.679 -1.739 17.095 18.436 Atomic orbital electron populations 1.22041 0.93061 1.02812 1.02618 1.21966 0.94668 0.96522 0.85855 0.93123 1.21437 0.83163 0.99516 0.94567 1.44164 1.00967 1.22066 1.66252 1.20518 0.92797 0.89857 0.93620 1.19361 0.95803 0.90702 1.31871 0.90705 1.25515 0.99688 0.98150 1.00468 1.70268 1.12353 1.23494 1.51818 0.85584 0.78683 0.80973 0.77208 1.21097 1.23237 1.19089 1.45747 1.63044 1.14477 1.08434 1.17040 0.77623 0.85497 0.82302 1.90679 1.53336 1.15647 1.85235 1.23381 1.06411 0.91320 0.97590 1.22690 1.05686 1.01881 0.90366 1.21617 1.01815 0.86177 0.91890 1.21886 1.15451 1.01137 0.91291 1.21101 0.97404 0.99293 0.94494 1.20314 1.03776 0.97801 0.95477 1.26447 1.05093 0.97261 1.03448 1.84368 1.62916 1.09575 0.99847 1.84875 1.61025 1.34662 1.13625 1.74187 1.13446 1.16812 0.99315 0.91235 0.93913 0.89129 0.91515 0.89793 0.98913 0.96326 0.94771 0.94895 0.75632 0.79129 0.82531 0.80547 0.77803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.22 9.49 71.98 0.68 -3.54 16 2 C 0.12 4.41 2.88 44.99 0.13 4.54 16 3 H 0.05 2.22 7.57 -2.39 -0.02 2.21 16 4 C 0.14 5.23 5.36 86.38 0.46 5.69 16 5 N -0.61 -29.60 2.82 -726.95 -2.05 -31.65 16 6 C 0.18 8.86 9.02 127.77 1.15 10.01 16 7 C -0.25 -13.02 8.02 84.03 0.67 -12.34 16 8 H 0.08 3.79 7.86 -2.91 -0.02 3.76 16 9 C -0.04 -2.39 5.06 84.86 0.43 -1.96 16 10 N -0.93 -56.33 10.67 21.65 0.23 -56.10 16 11 Si 0.95 45.96 29.58 68.60 2.03 47.99 16 12 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 13 H -0.31 -15.36 7.11 99.48 0.71 -14.65 16 14 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 15 N -0.67 -28.20 4.48 -444.91 -2.00 -30.20 16 16 C 0.59 26.35 7.82 86.94 0.68 27.03 16 17 O -0.57 -27.30 16.60 -3.67 -0.06 -27.36 16 18 C -0.03 -1.22 7.17 42.79 0.31 -0.91 16 19 C -0.18 -6.22 10.77 22.87 0.25 -5.97 16 20 C 0.05 1.51 7.28 24.32 0.18 1.68 16 21 C -0.18 -4.16 6.45 24.10 0.16 -4.01 16 22 C -0.09 -1.63 10.17 21.67 0.22 -1.41 16 23 C -0.14 -1.81 10.15 21.12 0.21 -1.60 16 24 C -0.19 -2.13 11.21 66.80 0.75 -1.38 16 25 S 0.17 2.93 23.11 -56.49 -1.31 1.63 16 26 O 0.14 4.71 11.21 66.55 0.75 5.46 16 27 N -0.34 -13.53 11.81 -48.87 -0.58 -14.10 16 28 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.07 2.30 8.03 -2.39 -0.02 2.29 16 32 H 0.08 2.69 7.86 -2.39 -0.02 2.67 16 33 H -0.01 -0.43 7.40 -2.38 -0.02 -0.44 16 34 H 0.02 0.99 7.21 -2.39 -0.02 0.97 16 35 H 0.03 1.42 7.83 -2.39 -0.02 1.41 16 36 H 0.24 14.53 8.31 -92.71 -0.77 13.76 16 37 H 0.41 17.57 7.15 -92.71 -0.66 16.91 16 38 H 0.19 5.77 8.06 -2.91 -0.02 5.75 16 39 H 0.16 2.57 8.06 -2.91 -0.02 2.55 16 40 H 0.18 1.16 8.06 -2.91 -0.02 1.13 16 41 H 0.21 0.91 8.06 -2.91 -0.02 0.89 16 Total: -1.00 -72.27 368.35 3.70 -68.57 By element: Atomic # 1 Polarization: 19.54 SS G_CDS: 0.40 Total: 19.94 kcal Atomic # 6 Polarization: 9.55 SS G_CDS: 6.28 Total: 15.83 kcal Atomic # 7 Polarization: -127.66 SS G_CDS: -4.39 Total: -132.05 kcal Atomic # 8 Polarization: -22.59 SS G_CDS: 0.69 Total: -21.90 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Atomic # 16 Polarization: 2.93 SS G_CDS: -1.31 Total: 1.63 kcal Total: -72.27 3.70 -68.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699452899.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.754 kcal (2) G-P(sol) polarization free energy of solvation -72.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds