Wall clock time and date at job start Tue Mar 31 2020 19:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46928 * 2 1 4 4 N 1.46505 * 109.46891 * 240.00156 * 2 1 3 5 5 C 1.36937 * 119.99900 * 84.99804 * 4 2 1 6 6 H 1.07999 * 120.00242 * 359.97438 * 5 4 2 7 7 C 1.38808 * 119.99908 * 179.97438 * 5 4 2 8 8 N 1.31620 * 120.00244 * 179.97438 * 7 5 4 9 9 Si 1.86807 * 119.99897 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.47007 * 89.99983 * 9 7 5 11 11 H 1.48502 * 109.46874 * 209.99706 * 9 7 5 12 12 H 1.48493 * 109.46943 * 329.99347 * 9 7 5 13 13 C 1.53001 * 109.47375 * 119.99885 * 2 1 3 14 14 H 1.08999 * 109.46935 * 185.00081 * 13 2 1 15 15 C 1.52999 * 109.46944 * 65.00342 * 13 2 1 16 16 N 1.46499 * 109.47193 * 305.00139 * 13 2 1 17 17 C 1.34777 * 119.99665 * 205.27836 * 16 13 2 18 18 O 1.21493 * 120.00328 * 359.72056 * 17 16 13 19 19 C 1.48344 * 119.99760 * 179.72345 * 17 16 13 20 20 C 1.41705 * 126.81440 * 179.70672 * 19 17 16 21 21 C 1.37151 * 103.79962 * 179.89295 * 20 19 17 22 22 C 1.47031 * 126.86152 * 180.11871 * 21 20 19 23 23 C 1.36199 * 125.33931 * 179.97438 * 22 21 20 24 24 C 1.37710 * 114.44226 * 179.79200 * 23 22 21 25 25 C 1.33732 * 115.19703 * 0.49858 * 24 23 22 26 26 S 1.75830 * 109.95997 * 359.72778 * 25 24 23 27 27 O 1.34570 * 106.28575 * 0.36967 * 21 20 19 28 28 N 1.20876 * 111.69293 * 359.74491 * 27 21 20 29 29 H 1.08994 * 109.47543 * 59.99852 * 1 2 3 30 30 H 1.09000 * 109.46935 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46766 * 299.99565 * 1 2 3 32 32 H 0.96993 * 119.99762 * 264.99016 * 4 2 1 33 33 H 0.97002 * 120.00308 * 180.02562 * 8 7 5 34 34 H 1.09001 * 109.46823 * 179.97438 * 15 13 2 35 35 H 1.08999 * 109.47091 * 299.99643 * 15 13 2 36 36 H 1.08996 * 109.47098 * 60.00014 * 15 13 2 37 37 H 0.97001 * 119.99790 * 24.99549 * 16 13 2 38 38 H 1.07999 * 128.09653 * 0.02562 * 20 19 17 39 39 H 1.07995 * 122.77629 * 359.96280 * 23 22 21 40 40 H 1.08003 * 122.40489 * 180.20670 * 24 23 22 41 41 H 1.08000 * 125.02528 * 179.73054 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1490 -0.0074 -2.3758 6 1 1.8917 1.0403 -2.4244 7 6 2.6121 -0.6616 -3.5091 8 7 2.7373 -0.0052 -4.6430 9 14 3.0564 -2.4742 -3.4252 10 1 1.8593 -3.2925 -3.7451 11 1 4.1322 -2.7660 -4.4065 12 1 3.5310 -2.8046 -2.0575 13 6 2.0400 -0.7212 1.2492 14 1 3.1263 -0.6442 1.2951 15 6 1.6354 -2.1954 1.1879 16 7 1.4559 -0.1036 2.4424 17 6 2.0942 -0.1890 3.6264 18 8 3.1514 -0.7824 3.7052 19 6 1.5058 0.4416 4.8333 20 6 2.0462 0.4363 6.1432 21 6 1.1321 1.1482 6.8772 22 6 1.2000 1.4535 8.3138 23 6 0.2726 2.1653 9.0126 24 6 0.5586 2.3139 10.3515 25 6 1.7013 1.7489 10.7556 26 16 2.4955 0.9632 9.3979 27 8 0.1577 1.5066 6.0210 28 7 0.3789 1.1100 4.9009 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 2.2491 -1.6317 -1.1526 33 1 3.0606 -0.4624 -5.4350 34 1 1.9992 -2.7093 2.0777 35 1 0.5491 -2.2724 1.1421 36 1 2.0700 -2.6549 0.3002 37 1 0.6119 0.3702 2.3794 38 1 2.9643 -0.0195 6.4834 39 1 -0.6151 2.5766 8.5552 40 1 -0.0909 2.8522 11.0258 41 1 2.0805 1.7718 11.7666 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700409897.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:07 Heat of formation + Delta-G solvation = 81.387054 kcal Electronic energy + Delta-G solvation = -25233.442537 eV Core-core repulsion = 21437.437786 eV Total energy + Delta-G solvation = -3796.004750 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -45.35952 -39.87839 -38.27123 -37.19088 -34.41917 -34.15541 -33.21783 -31.82290 -29.82916 -29.12056 -28.63124 -25.65978 -24.91541 -24.31294 -23.25862 -22.58441 -20.97573 -19.76346 -19.30403 -18.89837 -18.14773 -17.94549 -17.14557 -16.77614 -15.83537 -15.75682 -15.14626 -14.75080 -14.52944 -14.17466 -14.08728 -13.84431 -13.74210 -13.71411 -13.18792 -12.88027 -12.78139 -12.66961 -12.22556 -11.91406 -11.82626 -11.58178 -11.40672 -11.17371 -10.92405 -10.83782 -10.77199 -10.65941 -10.38068 -10.29277 -10.07260 -9.60315 -9.09466 -9.06928 -8.98198 -8.79139 -7.34385 -5.80077 -3.17014 -0.18059 0.76807 0.94103 1.33410 1.45416 2.29577 2.60461 2.83494 3.03371 3.35998 3.38453 3.44178 3.65446 4.00592 4.45709 4.52021 4.56239 4.76531 4.82078 4.95279 5.01376 5.15167 5.24758 5.35312 5.39118 5.46390 5.53257 5.57495 5.66888 5.80351 5.84825 5.96455 6.10433 6.21814 6.23903 6.41699 6.54424 6.67404 6.94272 7.33677 7.64903 7.94260 8.03335 8.38109 9.15609 9.87772 10.06375 11.37838 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.034135 B = 0.002007 C = 0.001950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.067563 B =13951.078691 C =14359.125110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.173 3.827 3 H 0.062 0.938 4 N -0.742 5.742 5 C -0.245 4.245 6 H 0.091 0.909 7 C 0.007 3.993 8 N -0.931 5.931 9 Si 0.881 3.119 10 H -0.283 1.283 11 H -0.290 1.290 12 H -0.276 1.276 13 C 0.132 3.868 14 H 0.094 0.906 15 C -0.163 4.163 16 N -0.700 5.700 17 C 0.595 3.405 18 O -0.521 6.521 19 C -0.012 4.012 20 C -0.167 4.167 21 C 0.039 3.961 22 C -0.143 4.143 23 C -0.098 4.098 24 C -0.136 4.136 25 C -0.207 4.207 26 S 0.177 5.823 27 O 0.136 5.864 28 N -0.326 5.326 29 H 0.064 0.936 30 H 0.053 0.947 31 H 0.036 0.964 32 H 0.363 0.637 33 H 0.260 0.740 34 H 0.055 0.945 35 H 0.061 0.939 36 H 0.071 0.929 37 H 0.406 0.594 38 H 0.184 0.816 39 H 0.151 0.849 40 H 0.148 0.852 41 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.228 3.081 34.054 34.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.063 3.937 3 H 0.080 0.920 4 N -0.387 5.387 5 C -0.375 4.375 6 H 0.109 0.891 7 C -0.189 4.189 8 N -0.579 5.579 9 Si 0.711 3.289 10 H -0.210 1.210 11 H -0.216 1.216 12 H -0.202 1.202 13 C 0.027 3.973 14 H 0.112 0.888 15 C -0.221 4.221 16 N -0.353 5.353 17 C 0.378 3.622 18 O -0.395 6.395 19 C -0.171 4.171 20 C -0.190 4.190 21 C -0.026 4.026 22 C -0.261 4.261 23 C -0.131 4.131 24 C -0.166 4.166 25 C -0.344 4.344 26 S 0.442 5.558 27 O 0.058 5.942 28 N -0.025 5.025 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.055 0.945 32 H 0.198 0.802 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.243 0.757 38 H 0.201 0.799 39 H 0.169 0.831 40 H 0.166 0.834 41 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -3.971 2.276 32.729 33.048 hybrid contribution -0.797 -0.500 0.470 1.052 sum -4.769 1.776 33.200 33.587 Atomic orbital electron populations 1.22513 0.98639 1.01392 1.00488 1.20328 0.92505 0.95924 0.84953 0.91975 1.42781 1.79802 1.09540 1.06601 1.19041 1.37392 0.95731 0.85351 0.89073 1.24655 1.01181 0.97518 0.95544 1.69694 1.52358 1.35575 1.00238 0.86607 0.78249 0.86830 0.77205 1.20973 1.21602 1.20221 1.21477 0.99366 0.92905 0.83516 0.88812 1.22182 1.02006 0.95671 1.02231 1.46104 1.25719 1.55692 1.07767 1.16847 0.84129 0.79796 0.81419 1.90812 1.21526 1.42480 1.84706 1.23400 0.93871 1.02833 0.96951 1.22624 1.02421 1.03169 0.90812 1.21240 0.90292 1.00514 0.90550 1.21802 1.02544 1.09936 0.91853 1.20762 0.99916 0.98701 0.93697 1.20052 0.97965 1.02897 0.95690 1.26000 1.00152 1.05173 1.03081 1.84398 1.21055 1.52717 0.97654 1.84922 1.39912 1.56805 1.12558 1.74181 1.16844 1.12295 0.99190 0.91654 0.92826 0.94480 0.80206 0.92984 0.92591 0.91969 0.91053 0.75680 0.79915 0.83093 0.83412 0.81064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.83 9.01 37.16 0.33 -2.49 16 2 C 0.17 3.25 2.93 -67.93 -0.20 3.05 16 3 H 0.06 1.22 8.08 -51.93 -0.42 0.80 16 4 N -0.74 -17.16 4.84 -53.42 -0.26 -17.42 16 5 C -0.25 -6.81 10.41 -15.06 -0.16 -6.96 16 6 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 7 C 0.01 0.21 5.50 -17.43 -0.10 0.11 16 8 N -0.93 -29.05 13.97 55.49 0.78 -28.28 16 9 Si 0.88 21.99 27.74 -169.99 -4.71 17.27 16 10 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 12 H -0.28 -6.49 6.52 56.52 0.37 -6.12 16 13 C 0.13 2.20 2.62 -67.93 -0.18 2.02 16 14 H 0.09 1.73 7.57 -51.93 -0.39 1.34 16 15 C -0.16 -2.57 9.00 37.16 0.33 -2.23 16 16 N -0.70 -10.21 4.99 -54.59 -0.27 -10.48 16 17 C 0.60 9.05 7.82 -12.10 -0.09 8.96 16 18 O -0.52 -9.27 16.60 5.37 0.09 -9.18 16 19 C -0.01 -0.16 7.17 -82.66 -0.59 -0.75 16 20 C -0.17 -1.81 10.77 -38.65 -0.42 -2.23 16 21 C 0.04 0.37 7.28 -36.41 -0.26 0.11 16 22 C -0.14 -1.09 6.45 -36.75 -0.24 -1.33 16 23 C -0.10 -0.60 10.17 -40.51 -0.41 -1.01 16 24 C -0.14 -0.64 10.15 -41.35 -0.42 -1.05 16 25 C -0.21 -0.91 11.21 29.15 0.33 -0.59 16 26 S 0.18 1.05 23.11 -107.50 -2.48 -1.43 16 27 O 0.14 1.45 11.21 15.76 0.18 1.62 16 28 N -0.33 -4.01 11.81 33.36 0.39 -3.62 16 29 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.05 0.87 6.56 -51.93 -0.34 0.53 16 31 H 0.04 0.50 6.29 -51.93 -0.33 0.18 16 32 H 0.36 8.26 3.63 -40.82 -0.15 8.11 16 33 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.06 0.91 6.56 -51.93 -0.34 0.57 16 36 H 0.07 1.20 6.29 -51.93 -0.33 0.87 16 37 H 0.41 5.34 6.33 -40.82 -0.26 5.08 16 38 H 0.18 1.71 8.06 -52.49 -0.42 1.29 16 39 H 0.15 0.73 8.06 -52.49 -0.42 0.30 16 40 H 0.15 0.37 8.06 -52.48 -0.42 -0.06 16 41 H 0.17 0.34 8.06 -52.49 -0.42 -0.08 16 LS Contribution 361.70 15.07 5.45 5.45 Total: -1.00 -32.73 361.70 -7.60 -40.33 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -4.68 Total: 10.15 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: -2.07 Total: -4.41 kcal Atomic # 7 Polarization: -60.43 SS G_CDS: 0.64 Total: -59.79 kcal Atomic # 8 Polarization: -7.83 SS G_CDS: 0.27 Total: -7.56 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.71 Total: 17.27 kcal Atomic # 16 Polarization: 1.05 SS G_CDS: -2.48 Total: -1.43 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.73 -7.60 -40.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700409897.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.713 kcal (2) G-P(sol) polarization free energy of solvation -32.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds