Wall clock time and date at job start Tue Mar 31 2020 19:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46928 * 2 1 4 4 N 1.46505 * 109.46891 * 240.00156 * 2 1 3 5 5 C 1.36937 * 119.99900 * 84.99804 * 4 2 1 6 6 H 1.07999 * 120.00242 * 359.97438 * 5 4 2 7 7 C 1.38808 * 119.99908 * 179.97438 * 5 4 2 8 8 N 1.31620 * 120.00244 * 179.97438 * 7 5 4 9 9 Si 1.86807 * 119.99897 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.47007 * 89.99983 * 9 7 5 11 11 H 1.48502 * 109.46874 * 209.99706 * 9 7 5 12 12 H 1.48493 * 109.46943 * 329.99347 * 9 7 5 13 13 C 1.53001 * 109.47375 * 119.99885 * 2 1 3 14 14 H 1.08999 * 109.46935 * 185.00081 * 13 2 1 15 15 C 1.52999 * 109.46944 * 65.00342 * 13 2 1 16 16 N 1.46499 * 109.47193 * 305.00139 * 13 2 1 17 17 C 1.34777 * 119.99665 * 205.27836 * 16 13 2 18 18 O 1.21493 * 120.00328 * 359.72056 * 17 16 13 19 19 C 1.48344 * 119.99760 * 179.72345 * 17 16 13 20 20 C 1.41705 * 126.81440 * 179.70672 * 19 17 16 21 21 C 1.37151 * 103.79962 * 179.89295 * 20 19 17 22 22 C 1.47031 * 126.86152 * 180.11871 * 21 20 19 23 23 C 1.36199 * 125.33931 * 179.97438 * 22 21 20 24 24 C 1.37710 * 114.44226 * 179.79200 * 23 22 21 25 25 C 1.33732 * 115.19703 * 0.49858 * 24 23 22 26 26 S 1.75830 * 109.95997 * 359.72778 * 25 24 23 27 27 O 1.34570 * 106.28575 * 0.36967 * 21 20 19 28 28 N 1.20876 * 111.69293 * 359.74491 * 27 21 20 29 29 H 1.08994 * 109.47543 * 59.99852 * 1 2 3 30 30 H 1.09000 * 109.46935 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46766 * 299.99565 * 1 2 3 32 32 H 0.96993 * 119.99762 * 264.99016 * 4 2 1 33 33 H 0.97002 * 120.00308 * 180.02562 * 8 7 5 34 34 H 1.09001 * 109.46823 * 179.97438 * 15 13 2 35 35 H 1.08999 * 109.47091 * 299.99643 * 15 13 2 36 36 H 1.08996 * 109.47098 * 60.00014 * 15 13 2 37 37 H 0.97001 * 119.99790 * 24.99549 * 16 13 2 38 38 H 1.07999 * 128.09653 * 0.02562 * 20 19 17 39 39 H 1.07995 * 122.77629 * 359.96280 * 23 22 21 40 40 H 1.08003 * 122.40489 * 180.20670 * 24 23 22 41 41 H 1.08000 * 125.02528 * 179.73054 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1490 -0.0074 -2.3758 6 1 1.8917 1.0403 -2.4244 7 6 2.6121 -0.6616 -3.5091 8 7 2.7373 -0.0052 -4.6430 9 14 3.0564 -2.4742 -3.4252 10 1 1.8593 -3.2925 -3.7451 11 1 4.1322 -2.7660 -4.4065 12 1 3.5310 -2.8046 -2.0575 13 6 2.0400 -0.7212 1.2492 14 1 3.1263 -0.6442 1.2951 15 6 1.6354 -2.1954 1.1879 16 7 1.4559 -0.1036 2.4424 17 6 2.0942 -0.1890 3.6264 18 8 3.1514 -0.7824 3.7052 19 6 1.5058 0.4416 4.8333 20 6 2.0462 0.4363 6.1432 21 6 1.1321 1.1482 6.8772 22 6 1.2000 1.4535 8.3138 23 6 0.2726 2.1653 9.0126 24 6 0.5586 2.3139 10.3515 25 6 1.7013 1.7489 10.7556 26 16 2.4955 0.9632 9.3979 27 8 0.1577 1.5066 6.0210 28 7 0.3789 1.1100 4.9009 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 2.2491 -1.6317 -1.1526 33 1 3.0606 -0.4624 -5.4350 34 1 1.9992 -2.7093 2.0777 35 1 0.5491 -2.2724 1.1421 36 1 2.0700 -2.6549 0.3002 37 1 0.6119 0.3702 2.3794 38 1 2.9643 -0.0195 6.4834 39 1 -0.6151 2.5766 8.5552 40 1 -0.0909 2.8522 11.0258 41 1 2.0805 1.7718 11.7666 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700409897.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:06 Heat of formation + Delta-G solvation = 59.880415 kcal Electronic energy + Delta-G solvation = -25234.375134 eV Core-core repulsion = 21437.437786 eV Total energy + Delta-G solvation = -3796.937348 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -46.23623 -41.15063 -38.69743 -38.68545 -35.82218 -35.31130 -34.13145 -33.58115 -31.44071 -30.13142 -29.69107 -26.67748 -26.08792 -25.45039 -24.43628 -23.84376 -21.89069 -20.93429 -20.58222 -19.86410 -19.39253 -19.02968 -18.17731 -17.54101 -17.08059 -16.74736 -16.40999 -16.21237 -15.85141 -15.56594 -15.41516 -15.03963 -14.68743 -14.41389 -14.19770 -14.13731 -13.79725 -13.58290 -13.39201 -13.28409 -13.20926 -12.91549 -12.70759 -12.68619 -12.30977 -11.96829 -11.82249 -11.81136 -11.74793 -11.71768 -11.53378 -11.43969 -11.02996 -10.35472 -9.51860 -9.38698 -9.34820 -8.03492 -5.38143 -0.74292 -0.00919 0.29245 0.81034 0.94444 1.36980 1.39766 1.46406 1.64395 1.82514 1.90562 1.92499 2.46827 2.67519 3.21808 3.27632 3.57141 3.65592 3.72001 3.93237 3.96627 4.03013 4.19318 4.22481 4.48232 4.49258 4.55798 4.61384 4.64990 4.74134 4.84165 4.88359 5.06983 5.08230 5.15279 5.26070 5.27318 5.43525 5.52438 5.75455 6.16473 6.20121 6.73676 6.86386 7.05142 7.78805 7.98339 9.17558 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.034135 B = 0.002007 C = 0.001950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.067563 B =13951.078691 C =14359.125110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.169 3.831 3 H 0.048 0.952 4 N -0.745 5.745 5 C -0.229 4.229 6 H 0.059 0.941 7 C -0.061 4.061 8 N -0.981 5.981 9 Si 0.948 3.052 10 H -0.275 1.275 11 H -0.296 1.296 12 H -0.253 1.253 13 C 0.143 3.857 14 H 0.074 0.926 15 C -0.158 4.158 16 N -0.692 5.692 17 C 0.598 3.402 18 O -0.551 6.551 19 C -0.029 4.029 20 C -0.182 4.182 21 C 0.059 3.941 22 C -0.181 4.181 23 C -0.085 4.085 24 C -0.146 4.146 25 C -0.189 4.189 26 S 0.166 5.834 27 O 0.142 5.858 28 N -0.336 5.336 29 H 0.043 0.957 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.368 0.632 33 H 0.258 0.742 34 H 0.060 0.940 35 H 0.077 0.923 36 H 0.062 0.938 37 H 0.414 0.586 38 H 0.192 0.808 39 H 0.162 0.838 40 H 0.174 0.826 41 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.259 2.465 37.706 38.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.061 3.939 3 H 0.066 0.934 4 N -0.391 5.391 5 C -0.360 4.360 6 H 0.077 0.923 7 C -0.253 4.253 8 N -0.632 5.632 9 Si 0.775 3.225 10 H -0.201 1.201 11 H -0.223 1.223 12 H -0.178 1.178 13 C 0.038 3.962 14 H 0.092 0.908 15 C -0.216 4.216 16 N -0.345 5.345 17 C 0.382 3.618 18 O -0.427 6.427 19 C -0.186 4.186 20 C -0.205 4.205 21 C -0.005 4.005 22 C -0.299 4.299 23 C -0.119 4.119 24 C -0.175 4.175 25 C -0.326 4.326 26 S 0.431 5.569 27 O 0.063 5.937 28 N -0.035 5.035 29 H 0.062 0.938 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.203 0.797 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.096 0.904 36 H 0.081 0.919 37 H 0.253 0.747 38 H 0.209 0.791 39 H 0.180 0.820 40 H 0.192 0.808 41 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -5.036 1.664 36.433 36.818 hybrid contribution -0.538 -0.123 -0.413 0.689 sum -5.574 1.541 36.021 36.482 Atomic orbital electron populations 1.22358 0.96335 1.02256 1.01120 1.20466 0.93978 0.95070 0.84408 0.93374 1.42742 1.80117 1.09725 1.06480 1.18984 1.35400 0.94601 0.86995 0.92262 1.25449 1.02204 1.02424 0.95208 1.69872 1.54494 1.37662 1.01127 0.85524 0.77903 0.81011 0.78071 1.20070 1.22318 1.17761 1.21128 0.98248 0.93565 0.83228 0.90768 1.22140 1.02973 0.94471 1.02026 1.45929 1.25878 1.55619 1.07115 1.17053 0.83627 0.79215 0.81891 1.90790 1.22816 1.43854 1.85264 1.23135 0.94744 1.03940 0.96746 1.22720 1.03305 1.04337 0.90150 1.21483 0.89034 0.98797 0.91194 1.21869 1.04366 1.12616 0.91036 1.21095 0.99504 0.96919 0.94370 1.20341 0.98535 1.03291 0.95375 1.26434 0.99412 1.03125 1.03594 1.84475 1.21015 1.53114 0.98272 1.84886 1.40071 1.56394 1.12322 1.74158 1.16693 1.12618 1.00010 0.93751 0.91811 0.91162 0.79686 0.93336 0.92091 0.90396 0.91897 0.74701 0.79119 0.82022 0.80841 0.78327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.13 9.01 71.98 0.65 -4.48 16 2 C 0.17 6.30 2.93 44.99 0.13 6.43 16 3 H 0.05 1.92 8.08 -2.39 -0.02 1.90 16 4 N -0.75 -34.21 4.84 -322.93 -1.56 -35.77 16 5 C -0.23 -12.94 10.41 84.03 0.87 -12.06 16 6 H 0.06 3.67 8.06 -2.91 -0.02 3.64 16 7 C -0.06 -3.61 5.50 84.86 0.47 -3.14 16 8 N -0.98 -62.97 13.97 21.65 0.30 -62.67 16 9 Si 0.95 45.51 27.74 68.60 1.90 47.41 16 10 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 11 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 12 H -0.25 -11.04 6.52 99.48 0.65 -10.39 16 13 C 0.14 4.67 2.62 44.99 0.12 4.79 16 14 H 0.07 2.74 7.57 -2.39 -0.02 2.72 16 15 C -0.16 -4.71 9.00 71.98 0.65 -4.06 16 16 N -0.69 -19.56 4.99 -444.93 -2.22 -21.78 16 17 C 0.60 17.97 7.82 86.93 0.68 18.64 16 18 O -0.55 -19.64 16.60 -3.69 -0.06 -19.70 16 19 C -0.03 -0.73 7.17 42.79 0.31 -0.43 16 20 C -0.18 -3.86 10.77 22.87 0.25 -3.61 16 21 C 0.06 1.08 7.28 24.32 0.18 1.26 16 22 C -0.18 -2.47 6.45 24.10 0.16 -2.32 16 23 C -0.09 -0.83 10.17 21.67 0.22 -0.61 16 24 C -0.15 -0.87 10.15 21.12 0.21 -0.65 16 25 C -0.19 -1.05 11.21 66.80 0.75 -0.30 16 26 S 0.17 1.69 23.11 -56.49 -1.31 0.39 16 27 O 0.14 2.87 11.21 66.56 0.75 3.61 16 28 N -0.34 -7.97 11.81 -48.86 -0.58 -8.55 16 29 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.06 1.91 6.56 -2.39 -0.02 1.90 16 31 H 0.07 1.76 6.29 -2.38 -0.02 1.74 16 32 H 0.37 16.23 3.63 -92.71 -0.34 15.89 16 33 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 34 H 0.06 1.76 8.14 -2.39 -0.02 1.75 16 35 H 0.08 2.06 6.56 -2.39 -0.02 2.05 16 36 H 0.06 1.99 6.29 -2.39 -0.02 1.97 16 37 H 0.41 10.27 6.33 -92.71 -0.59 9.68 16 38 H 0.19 3.57 8.06 -2.91 -0.02 3.54 16 39 H 0.16 1.13 8.06 -2.91 -0.02 1.11 16 40 H 0.17 0.13 8.06 -2.91 -0.02 0.11 16 41 H 0.20 -0.05 8.06 -2.91 -0.02 -0.07 16 Total: -1.00 -72.25 361.70 2.98 -69.28 By element: Atomic # 1 Polarization: 28.20 SS G_CDS: 0.11 Total: 28.31 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: 5.64 Total: -0.54 kcal Atomic # 7 Polarization: -124.71 SS G_CDS: -4.05 Total: -128.77 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: 0.68 Total: -16.09 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 1.90 Total: 47.41 kcal Atomic # 16 Polarization: 1.69 SS G_CDS: -1.31 Total: 0.39 kcal Total: -72.25 2.98 -69.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700409897.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.156 kcal (2) G-P(sol) polarization free energy of solvation -72.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds