Wall clock time and date at job start Tue Mar 31 2020 19:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 N 1.46500 * 109.47249 * 120.00351 * 2 1 3 5 5 C 1.36939 * 119.99555 * 274.99680 * 4 2 1 6 6 H 1.07999 * 120.00498 * 0.02562 * 5 4 2 7 7 C 1.38813 * 119.99885 * 179.97438 * 5 4 2 8 8 N 1.31623 * 120.00026 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00060 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.46953 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46786 * 120.00380 * 9 7 5 12 12 H 1.48498 * 109.47226 * 239.99908 * 9 7 5 13 13 C 1.52999 * 109.46623 * 239.99904 * 2 1 3 14 14 H 1.09000 * 109.47486 * 299.99829 * 13 2 1 15 15 C 1.53006 * 109.46997 * 179.97438 * 13 2 1 16 16 N 1.46505 * 109.47266 * 60.00137 * 13 2 1 17 17 C 1.34771 * 120.00080 * 204.99535 * 16 13 2 18 18 O 1.21496 * 120.00155 * 0.02562 * 17 16 13 19 19 C 1.48344 * 120.00092 * 179.97438 * 17 16 13 20 20 C 1.41701 * 126.81322 * 179.70938 * 19 17 16 21 21 C 1.37163 * 103.80055 * 179.88948 * 20 19 17 22 22 C 1.47026 * 126.86074 * 180.11756 * 21 20 19 23 23 C 1.36202 * 125.33131 * 179.97438 * 22 21 20 24 24 C 1.37719 * 114.43443 * 179.79112 * 23 22 21 25 25 C 1.33722 * 115.19692 * 0.50303 * 24 23 22 26 26 S 1.75824 * 109.96250 * 359.72802 * 25 24 23 27 27 O 1.34573 * 106.27908 * 0.36926 * 21 20 19 28 28 N 1.20873 * 111.69478 * 359.74862 * 27 21 20 29 29 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 30 30 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 31 31 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 32 32 H 0.96998 * 120.00364 * 94.99433 * 4 2 1 33 33 H 0.96993 * 120.00204 * 179.97438 * 8 7 5 34 34 H 1.09000 * 109.46866 * 300.00212 * 15 13 2 35 35 H 1.08996 * 109.47261 * 59.99820 * 15 13 2 36 36 H 1.09001 * 109.47377 * 180.02562 * 15 13 2 37 37 H 0.97003 * 119.99519 * 24.99891 * 16 13 2 38 38 H 1.07998 * 128.10119 * 0.02681 * 20 19 17 39 39 H 1.07996 * 122.77688 * 359.96717 * 23 22 21 40 40 H 1.08007 * 122.39795 * 180.20525 * 24 23 22 41 41 H 1.08000 * 125.02151 * 179.72647 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1493 -0.0075 2.3757 6 1 1.8920 1.0403 2.4244 7 6 2.6115 -0.6620 3.5092 8 7 2.9245 -1.9391 3.4501 9 14 2.7906 0.2701 5.1181 10 1 2.3767 1.6824 4.9207 11 1 1.9295 -0.3578 6.1523 12 1 4.2075 0.2261 5.5605 13 6 2.0399 -0.7213 -1.2493 14 1 1.6766 -1.7490 -1.2493 15 6 3.5700 -0.7208 -1.2497 16 7 1.5516 -0.0307 -2.4455 17 6 1.4228 -0.7030 -3.6064 18 8 1.7113 -1.8819 -3.6609 19 6 0.9278 -0.0038 -4.8175 20 6 0.7433 -0.5644 -6.1057 21 6 0.2729 0.4841 -6.8545 22 6 -0.0905 0.4576 -8.2789 23 6 -0.5560 1.5199 -8.9929 24 6 -0.8225 1.2444 -10.3157 25 6 -0.5947 -0.0186 -10.6913 26 16 0.0007 -0.9527 -9.3259 27 8 0.2157 1.5433 -6.0264 28 7 0.5794 1.2576 -4.9097 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 2.2491 -1.6318 1.1526 33 1 3.2478 -2.3964 4.2420 34 1 3.9329 0.3070 -1.2499 35 1 3.9338 -1.2343 -0.3597 36 1 3.9333 -1.2342 -2.1399 37 1 1.3209 0.9105 -2.4018 38 1 0.9276 -1.5801 -6.4231 39 1 -0.7013 2.4979 -8.5585 40 1 -1.1936 1.9936 -10.9995 41 1 -0.7531 -0.4075 -11.6863 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700409899.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:12 Heat of formation + Delta-G solvation = 72.570218 kcal Electronic energy + Delta-G solvation = -25146.146904 eV Core-core repulsion = 21349.759827 eV Total energy + Delta-G solvation = -3796.387077 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -45.31600 -39.74182 -38.24713 -36.83852 -34.36570 -34.05913 -33.17773 -31.70863 -29.62007 -29.08175 -28.41016 -25.51677 -24.73986 -24.00790 -23.21278 -22.44353 -20.85392 -20.19373 -19.40017 -18.83240 -18.10530 -17.46472 -17.08724 -16.72414 -15.79549 -15.69824 -14.93385 -14.62126 -14.51985 -13.97414 -13.82436 -13.71795 -13.62750 -13.37752 -13.16012 -13.08989 -12.84631 -12.45601 -11.95316 -11.85618 -11.73196 -11.38076 -11.23118 -10.99829 -10.85478 -10.79186 -10.73998 -10.69796 -10.24837 -10.20430 -9.91131 -9.70784 -9.08996 -9.07098 -8.85235 -8.76055 -7.01160 -5.79313 -3.09097 -0.15170 0.79441 0.99341 1.35897 1.49099 2.32137 2.64416 2.91327 3.11124 3.41981 3.47751 3.49890 3.70915 4.05157 4.48634 4.54948 4.58620 4.80463 4.86052 4.99007 5.05000 5.26084 5.42582 5.46650 5.49803 5.63815 5.69287 5.71281 5.82644 5.85785 6.08391 6.13891 6.33916 6.38771 6.48385 6.57364 6.78182 6.87228 6.99847 7.42791 7.67906 7.70590 8.11765 8.38080 9.49767 10.04158 10.39617 11.43046 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.038667 B = 0.001908 C = 0.001857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.966256 B =14671.251559 C =15070.591414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.169 3.831 3 H 0.052 0.948 4 N -0.717 5.717 5 C -0.239 4.239 6 H 0.072 0.928 7 C -0.012 4.012 8 N -0.930 5.930 9 Si 0.907 3.093 10 H -0.280 1.280 11 H -0.292 1.292 12 H -0.292 1.292 13 C 0.134 3.866 14 H 0.089 0.911 15 C -0.153 4.153 16 N -0.698 5.698 17 C 0.595 3.405 18 O -0.521 6.521 19 C -0.011 4.011 20 C -0.167 4.167 21 C 0.037 3.963 22 C -0.142 4.142 23 C -0.099 4.099 24 C -0.136 4.136 25 C -0.208 4.208 26 S 0.177 5.823 27 O 0.135 5.865 28 N -0.326 5.326 29 H 0.056 0.944 30 H 0.035 0.965 31 H 0.047 0.953 32 H 0.386 0.614 33 H 0.255 0.745 34 H 0.052 0.948 35 H 0.084 0.916 36 H 0.048 0.952 37 H 0.404 0.596 38 H 0.183 0.817 39 H 0.151 0.849 40 H 0.148 0.852 41 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.370 5.799 -31.067 32.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.058 3.942 3 H 0.070 0.930 4 N -0.359 5.359 5 C -0.370 4.370 6 H 0.089 0.911 7 C -0.208 4.208 8 N -0.578 5.578 9 Si 0.738 3.262 10 H -0.206 1.206 11 H -0.219 1.219 12 H -0.219 1.219 13 C 0.030 3.970 14 H 0.107 0.893 15 C -0.212 4.212 16 N -0.348 5.348 17 C 0.378 3.622 18 O -0.396 6.396 19 C -0.169 4.169 20 C -0.190 4.190 21 C -0.027 4.027 22 C -0.260 4.260 23 C -0.132 4.132 24 C -0.166 4.166 25 C -0.345 4.345 26 S 0.442 5.558 27 O 0.057 5.943 28 N -0.026 5.026 29 H 0.075 0.925 30 H 0.054 0.946 31 H 0.067 0.933 32 H 0.220 0.780 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.103 0.897 36 H 0.067 0.933 37 H 0.239 0.761 38 H 0.201 0.799 39 H 0.169 0.831 40 H 0.166 0.834 41 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -6.687 4.498 -29.772 30.844 hybrid contribution -0.369 1.411 0.325 1.494 sum -7.057 5.909 -29.447 30.852 Atomic orbital electron populations 1.22458 0.98952 1.01168 0.99971 1.20389 0.92205 0.95647 0.85958 0.92991 1.42285 1.78209 1.10678 1.04753 1.19240 1.36773 0.93927 0.87025 0.91053 1.24749 1.02026 0.95983 0.98072 1.69671 1.50675 1.08619 1.28858 0.86118 0.77298 0.78769 0.83982 1.20575 1.21892 1.21866 1.21491 0.94744 0.97669 0.83064 0.89268 1.22068 0.94502 1.02026 1.02563 1.45979 1.65303 1.14335 1.09232 1.16816 0.78262 0.85872 0.81290 1.90814 1.50097 1.14535 1.84108 1.23438 1.05458 0.90767 0.97284 1.22633 1.04082 1.01324 0.90975 1.21240 1.03439 0.87063 0.90992 1.21804 1.12476 0.99477 0.92288 1.20761 0.99335 0.99443 0.93624 1.20048 1.03635 0.96878 0.96036 1.25992 1.07541 0.97860 1.03080 1.84398 1.62634 1.09576 0.99177 1.84920 1.61497 1.34087 1.13772 1.74177 1.13326 1.16150 0.98906 0.92462 0.94610 0.93334 0.78009 0.93489 0.92900 0.89740 0.93333 0.76095 0.79930 0.83116 0.83439 0.81082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.01 9.33 37.16 0.35 -2.67 16 2 C 0.17 3.28 2.52 -67.93 -0.17 3.11 16 3 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 4 N -0.72 -17.46 4.43 -53.42 -0.24 -17.69 16 5 C -0.24 -6.46 9.93 -15.06 -0.15 -6.61 16 6 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 7 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 8 N -0.93 -27.76 13.06 55.49 0.72 -27.04 16 9 Si 0.91 22.22 29.55 -169.99 -5.02 17.19 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 12 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 13 C 0.13 2.36 2.21 -67.93 -0.15 2.21 16 14 H 0.09 1.72 7.58 -51.93 -0.39 1.32 16 15 C -0.15 -2.69 9.33 37.16 0.35 -2.35 16 16 N -0.70 -10.57 4.38 -54.59 -0.24 -10.81 16 17 C 0.60 9.36 7.81 -12.10 -0.09 9.26 16 18 O -0.52 -9.60 16.61 5.37 0.09 -9.51 16 19 C -0.01 -0.15 7.17 -82.66 -0.59 -0.74 16 20 C -0.17 -1.87 10.77 -38.65 -0.42 -2.29 16 21 C 0.04 0.37 7.28 -36.41 -0.26 0.10 16 22 C -0.14 -1.12 6.45 -36.75 -0.24 -1.36 16 23 C -0.10 -0.63 10.17 -40.50 -0.41 -1.04 16 24 C -0.14 -0.66 10.15 -41.35 -0.42 -1.08 16 25 C -0.21 -0.96 11.21 29.15 0.33 -0.63 16 26 S 0.18 1.09 23.11 -107.50 -2.48 -1.39 16 27 O 0.14 1.48 11.21 15.75 0.18 1.65 16 28 N -0.33 -4.12 11.81 33.36 0.39 -3.73 16 29 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.03 0.55 7.44 -51.93 -0.39 0.17 16 31 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.39 10.07 7.59 -40.82 -0.31 9.76 16 33 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 34 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.08 1.66 7.45 -51.93 -0.39 1.27 16 36 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.40 5.49 8.14 -40.82 -0.33 5.15 16 38 H 0.18 1.78 8.06 -52.49 -0.42 1.36 16 39 H 0.15 0.76 8.06 -52.49 -0.42 0.33 16 40 H 0.15 0.39 8.06 -52.48 -0.42 -0.03 16 41 H 0.17 0.37 8.06 -52.49 -0.42 -0.05 16 LS Contribution 372.52 15.07 5.61 5.61 Total: -1.00 -31.54 372.52 -8.13 -39.67 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: -5.16 Total: 10.56 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: -1.98 Total: -4.52 kcal Atomic # 7 Polarization: -59.91 SS G_CDS: 0.64 Total: -59.26 kcal Atomic # 8 Polarization: -8.13 SS G_CDS: 0.27 Total: -7.86 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.19 kcal Atomic # 16 Polarization: 1.09 SS G_CDS: -2.48 Total: -1.39 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.54 -8.13 -39.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700409899.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.236 kcal (2) G-P(sol) polarization free energy of solvation -31.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds