Wall clock time and date at job start Tue Mar 31 2020 19:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 N 1.46500 * 109.47249 * 120.00351 * 2 1 3 5 5 C 1.36939 * 119.99555 * 274.99680 * 4 2 1 6 6 H 1.07999 * 120.00498 * 0.02562 * 5 4 2 7 7 C 1.38813 * 119.99885 * 179.97438 * 5 4 2 8 8 N 1.31623 * 120.00026 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00060 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.46953 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46786 * 120.00380 * 9 7 5 12 12 H 1.48498 * 109.47226 * 239.99908 * 9 7 5 13 13 C 1.52999 * 109.46623 * 239.99904 * 2 1 3 14 14 H 1.09000 * 109.47486 * 299.99829 * 13 2 1 15 15 C 1.53006 * 109.46997 * 179.97438 * 13 2 1 16 16 N 1.46505 * 109.47266 * 60.00137 * 13 2 1 17 17 C 1.34771 * 120.00080 * 204.99535 * 16 13 2 18 18 O 1.21496 * 120.00155 * 0.02562 * 17 16 13 19 19 C 1.48344 * 120.00092 * 179.97438 * 17 16 13 20 20 C 1.41701 * 126.81322 * 179.70938 * 19 17 16 21 21 C 1.37163 * 103.80055 * 179.88948 * 20 19 17 22 22 C 1.47026 * 126.86074 * 180.11756 * 21 20 19 23 23 C 1.36202 * 125.33131 * 179.97438 * 22 21 20 24 24 C 1.37719 * 114.43443 * 179.79112 * 23 22 21 25 25 C 1.33722 * 115.19692 * 0.50303 * 24 23 22 26 26 S 1.75824 * 109.96250 * 359.72802 * 25 24 23 27 27 O 1.34573 * 106.27908 * 0.36926 * 21 20 19 28 28 N 1.20873 * 111.69478 * 359.74862 * 27 21 20 29 29 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 30 30 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 31 31 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 32 32 H 0.96998 * 120.00364 * 94.99433 * 4 2 1 33 33 H 0.96993 * 120.00204 * 179.97438 * 8 7 5 34 34 H 1.09000 * 109.46866 * 300.00212 * 15 13 2 35 35 H 1.08996 * 109.47261 * 59.99820 * 15 13 2 36 36 H 1.09001 * 109.47377 * 180.02562 * 15 13 2 37 37 H 0.97003 * 119.99519 * 24.99891 * 16 13 2 38 38 H 1.07998 * 128.10119 * 0.02681 * 20 19 17 39 39 H 1.07996 * 122.77688 * 359.96717 * 23 22 21 40 40 H 1.08007 * 122.39795 * 180.20525 * 24 23 22 41 41 H 1.08000 * 125.02151 * 179.72647 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1493 -0.0075 2.3757 6 1 1.8920 1.0403 2.4244 7 6 2.6115 -0.6620 3.5092 8 7 2.9245 -1.9391 3.4501 9 14 2.7906 0.2701 5.1181 10 1 2.3767 1.6824 4.9207 11 1 1.9295 -0.3578 6.1523 12 1 4.2075 0.2261 5.5605 13 6 2.0399 -0.7213 -1.2493 14 1 1.6766 -1.7490 -1.2493 15 6 3.5700 -0.7208 -1.2497 16 7 1.5516 -0.0307 -2.4455 17 6 1.4228 -0.7030 -3.6064 18 8 1.7113 -1.8819 -3.6609 19 6 0.9278 -0.0038 -4.8175 20 6 0.7433 -0.5644 -6.1057 21 6 0.2729 0.4841 -6.8545 22 6 -0.0905 0.4576 -8.2789 23 6 -0.5560 1.5199 -8.9929 24 6 -0.8225 1.2444 -10.3157 25 6 -0.5947 -0.0186 -10.6913 26 16 0.0007 -0.9527 -9.3259 27 8 0.2157 1.5433 -6.0264 28 7 0.5794 1.2576 -4.9097 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 2.2491 -1.6318 1.1526 33 1 3.2478 -2.3964 4.2420 34 1 3.9329 0.3070 -1.2499 35 1 3.9338 -1.2343 -0.3597 36 1 3.9333 -1.2342 -2.1399 37 1 1.3209 0.9105 -2.4018 38 1 0.9276 -1.5801 -6.4231 39 1 -0.7013 2.4979 -8.5585 40 1 -1.1936 1.9936 -10.9995 41 1 -0.7531 -0.4075 -11.6863 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700409899.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:12 Heat of formation + Delta-G solvation = 52.990688 kcal Electronic energy + Delta-G solvation = -25146.995936 eV Core-core repulsion = 21349.759827 eV Total energy + Delta-G solvation = -3797.236109 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -46.22602 -41.07165 -38.68799 -38.40364 -35.74955 -35.29710 -34.08682 -33.42793 -31.11940 -30.19477 -29.68252 -26.51449 -25.94854 -25.41776 -24.27228 -23.71139 -21.77104 -21.67365 -20.38369 -19.45147 -19.33181 -19.01917 -18.14961 -17.52406 -17.15373 -16.59540 -16.33391 -16.17189 -15.60478 -15.39349 -15.13731 -14.91312 -14.76888 -14.41998 -14.18956 -14.14042 -13.58848 -13.53964 -13.38632 -13.28682 -12.97371 -12.77889 -12.68212 -12.66510 -12.35020 -12.10950 -11.80983 -11.79402 -11.73610 -11.58105 -11.46715 -11.43105 -11.02385 -10.32304 -9.51476 -9.34166 -9.04192 -7.93433 -5.22788 -0.73530 0.00776 0.29852 0.81853 0.95149 1.48468 1.48687 1.58517 1.67022 1.83516 1.91476 1.94444 2.56213 2.70406 3.23705 3.40543 3.66227 3.70590 3.93810 3.98539 4.04511 4.12141 4.22941 4.28372 4.49158 4.53168 4.62060 4.65617 4.68386 4.81382 4.87494 4.97406 5.06446 5.07522 5.25619 5.27673 5.36853 5.44094 5.44901 5.53943 6.20909 6.27130 6.75775 6.89370 7.34058 8.05422 8.30005 9.29988 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.038667 B = 0.001908 C = 0.001857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.966256 B =14671.251559 C =15070.591414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.168 3.832 3 H 0.060 0.940 4 N -0.728 5.728 5 C -0.233 4.233 6 H 0.080 0.920 7 C -0.075 4.075 8 N -0.968 5.968 9 Si 0.971 3.029 10 H -0.265 1.265 11 H -0.297 1.297 12 H -0.295 1.295 13 C 0.149 3.851 14 H 0.070 0.930 15 C -0.144 4.144 16 N -0.689 5.689 17 C 0.598 3.402 18 O -0.553 6.553 19 C -0.028 4.028 20 C -0.182 4.182 21 C 0.059 3.941 22 C -0.181 4.181 23 C -0.085 4.085 24 C -0.146 4.146 25 C -0.189 4.189 26 S 0.165 5.835 27 O 0.143 5.857 28 N -0.335 5.335 29 H 0.046 0.954 30 H 0.065 0.935 31 H 0.036 0.964 32 H 0.374 0.626 33 H 0.250 0.750 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.052 0.948 37 H 0.414 0.586 38 H 0.191 0.809 39 H 0.163 0.837 40 H 0.175 0.825 41 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.481 7.864 -33.702 35.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.059 3.941 3 H 0.078 0.922 4 N -0.368 5.368 5 C -0.365 4.365 6 H 0.097 0.903 7 C -0.268 4.268 8 N -0.619 5.619 9 Si 0.801 3.199 10 H -0.189 1.189 11 H -0.224 1.224 12 H -0.223 1.223 13 C 0.044 3.956 14 H 0.089 0.911 15 C -0.203 4.203 16 N -0.340 5.340 17 C 0.382 3.618 18 O -0.429 6.429 19 C -0.185 4.185 20 C -0.206 4.206 21 C -0.005 4.005 22 C -0.299 4.299 23 C -0.119 4.119 24 C -0.175 4.175 25 C -0.326 4.326 26 S 0.430 5.570 27 O 0.063 5.937 28 N -0.034 5.034 29 H 0.065 0.935 30 H 0.084 0.916 31 H 0.056 0.944 32 H 0.206 0.794 33 H 0.059 0.941 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.251 0.749 38 H 0.208 0.792 39 H 0.180 0.820 40 H 0.192 0.808 41 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -7.821 6.619 -32.431 34.011 hybrid contribution -0.113 0.840 0.859 1.206 sum -7.934 7.459 -31.572 33.397 Atomic orbital electron populations 1.22309 0.97574 1.00748 1.00904 1.20530 0.92941 0.95609 0.85000 0.92174 1.42428 1.78436 1.10258 1.05709 1.19613 1.34811 0.94266 0.87830 0.90250 1.25533 1.02992 0.96849 1.01379 1.69828 1.52567 1.10203 1.29313 0.85099 0.76628 0.78257 0.79918 1.18897 1.22432 1.22278 1.21095 0.94606 0.96624 0.83299 0.91139 1.21950 0.94468 1.02349 1.01508 1.45767 1.65174 1.14644 1.08456 1.17042 0.77448 0.85511 0.81781 1.90795 1.51452 1.15977 1.84710 1.23122 1.06951 0.91398 0.96979 1.22722 1.05322 1.02176 0.90372 1.21478 1.01457 0.85979 0.91607 1.21865 1.15528 1.00960 0.91513 1.21099 0.97134 0.99433 0.94207 1.20341 1.03777 0.97644 0.95755 1.26429 1.05229 0.97432 1.03472 1.84487 1.62970 1.09622 0.99888 1.84884 1.60962 1.34320 1.13487 1.74154 1.13793 1.15704 0.99737 0.93477 0.91628 0.94445 0.79426 0.94126 0.91820 0.92178 0.92934 0.74885 0.79201 0.81999 0.80811 0.78320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.54 9.33 71.98 0.67 -4.86 16 2 C 0.17 6.49 2.52 44.99 0.11 6.60 16 3 H 0.06 2.25 8.08 -2.39 -0.02 2.23 16 4 N -0.73 -35.85 4.43 -322.93 -1.43 -37.28 16 5 C -0.23 -12.63 9.93 84.03 0.83 -11.80 16 6 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 7 C -0.08 -4.28 5.50 84.86 0.47 -3.81 16 8 N -0.97 -59.14 13.06 21.65 0.28 -58.86 16 9 Si 0.97 45.97 29.55 68.60 2.03 48.00 16 10 H -0.26 -11.68 7.11 99.48 0.71 -10.98 16 11 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 12 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 13 C 0.15 5.24 2.21 44.99 0.10 5.34 16 14 H 0.07 2.79 7.58 -2.39 -0.02 2.77 16 15 C -0.14 -5.12 9.33 71.98 0.67 -4.45 16 16 N -0.69 -20.51 4.38 -444.92 -1.95 -22.46 16 17 C 0.60 18.81 7.81 86.94 0.68 19.49 16 18 O -0.55 -20.75 16.61 -3.70 -0.06 -20.81 16 19 C -0.03 -0.73 7.17 42.79 0.31 -0.42 16 20 C -0.18 -4.04 10.77 22.87 0.25 -3.79 16 21 C 0.06 1.12 7.28 24.32 0.18 1.30 16 22 C -0.18 -2.56 6.45 24.10 0.16 -2.40 16 23 C -0.09 -0.86 10.17 21.67 0.22 -0.64 16 24 C -0.15 -0.91 10.15 21.12 0.21 -0.70 16 25 C -0.19 -1.12 11.21 66.79 0.75 -0.37 16 26 S 0.17 1.77 23.11 -56.49 -1.31 0.46 16 27 O 0.14 2.95 11.21 66.53 0.75 3.69 16 28 N -0.34 -8.16 11.81 -48.86 -0.58 -8.74 16 29 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.06 1.93 7.44 -2.39 -0.02 1.91 16 31 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.37 20.12 7.59 -92.71 -0.70 19.42 16 33 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 34 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.06 2.43 7.45 -2.39 -0.02 2.41 16 36 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.41 10.71 8.14 -92.71 -0.75 9.96 16 38 H 0.19 3.75 8.06 -2.91 -0.02 3.72 16 39 H 0.16 1.18 8.06 -2.91 -0.02 1.16 16 40 H 0.17 0.17 8.06 -2.91 -0.02 0.15 16 41 H 0.20 0.02 8.06 -2.91 -0.02 -0.01 16 Total: -1.00 -68.42 372.52 2.96 -65.46 By element: Atomic # 1 Polarization: 31.42 SS G_CDS: -0.38 Total: 31.05 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: 5.61 Total: -0.51 kcal Atomic # 7 Polarization: -123.66 SS G_CDS: -3.67 Total: -127.34 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: 0.68 Total: -17.11 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Atomic # 16 Polarization: 1.77 SS G_CDS: -1.31 Total: 0.46 kcal Total: -68.42 2.96 -65.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700409899.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.447 kcal (2) G-P(sol) polarization free energy of solvation -68.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds