Wall clock time and date at job start Tue Mar 31 2020 18:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47080 * 2 1 4 4 H 1.08994 * 109.47567 * 305.00833 * 3 2 1 5 5 C 1.52995 * 109.47104 * 185.00361 * 3 2 1 6 6 N 1.46500 * 109.47361 * 185.00342 * 5 3 2 7 7 C 1.34770 * 120.00423 * 180.02562 * 6 5 3 8 8 O 1.21610 * 119.99949 * 0.02562 * 7 6 5 9 9 C 1.47297 * 120.00444 * 180.02562 * 7 6 5 10 10 C 1.34217 * 124.79680 * 179.72414 * 9 7 6 11 11 C 1.39570 * 115.53429 * 179.85039 * 10 9 7 12 12 C 1.47754 * 129.59832 * 180.16000 * 11 10 9 13 13 C 1.34053 * 119.55863 * 180.26642 * 12 11 10 14 14 N 1.36557 * 121.42507 * 0.02562 * 13 12 11 15 15 H 0.97000 * 119.15754 * 179.97438 * 14 13 12 16 16 C 1.34302 * 121.67741 * 0.02562 * 14 13 12 17 17 O 1.21954 * 119.69224 * 180.02562 * 16 14 13 18 18 C 1.39392 * 112.90061 * 0.42368 * 11 10 9 19 19 S 1.75569 * 124.78822 * 0.02562 * 9 7 6 20 20 N 1.46505 * 109.46692 * 65.00756 * 3 2 1 21 21 C 1.36931 * 119.99788 * 274.99780 * 20 3 2 22 22 H 1.08002 * 120.00438 * 0.02562 * 21 20 3 23 23 C 1.38817 * 119.99680 * 179.72358 * 21 20 3 24 24 N 1.31614 * 119.99888 * 0.27479 * 23 21 20 25 25 Si 1.86803 * 119.99862 * 180.27671 * 23 21 20 26 26 H 1.48496 * 109.47141 * 59.99751 * 25 23 21 27 27 H 1.48490 * 109.47071 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.46993 * 300.00028 * 25 23 21 29 29 H 1.08999 * 109.47396 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46888 * 299.98914 * 1 2 3 31 31 H 1.08998 * 109.47562 * 59.98997 * 1 2 3 32 32 H 1.09005 * 109.46888 * 240.01086 * 2 1 3 33 33 H 1.08993 * 109.47875 * 120.00680 * 2 1 3 34 34 H 1.09005 * 109.47349 * 305.00426 * 5 3 2 35 35 H 1.09002 * 109.47351 * 65.00597 * 5 3 2 36 36 H 0.96998 * 119.99598 * 0.02562 * 6 5 3 37 37 H 1.08000 * 122.23177 * 0.03168 * 10 9 7 38 38 H 1.08007 * 120.21913 * 0.25427 * 12 11 10 39 39 H 1.07999 * 119.28573 * 179.97438 * 13 12 11 40 40 H 0.97000 * 119.99792 * 94.99575 * 20 3 2 41 41 H 0.97005 * 119.99715 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9817 -0.8417 5 6 3.5647 1.4444 -0.1258 6 7 4.0630 2.8168 -0.0060 7 6 5.3855 3.0631 -0.0869 8 8 6.1653 2.1461 -0.2599 9 6 5.8866 4.4430 0.0342 10 6 7.1800 4.7962 -0.0264 11 6 7.4378 6.1612 0.1087 12 6 8.7270 6.8829 0.0872 13 6 8.7423 8.2142 0.2435 14 7 7.5892 8.9232 0.4236 15 1 7.6386 9.8857 0.5338 16 6 6.3887 8.3218 0.4531 17 8 5.3819 8.9905 0.6157 18 6 6.2807 6.9160 0.2942 19 16 4.8767 5.8569 0.2855 20 7 1.6525 2.0974 1.2520 21 6 0.4157 2.6733 1.3691 22 1 -0.2743 2.6445 0.5387 23 6 0.0465 3.2888 2.5573 24 7 0.8871 3.3235 3.5694 25 14 -1.6436 4.0677 2.7197 26 1 -2.6878 3.0325 2.5123 27 1 -1.7900 4.6544 4.0760 28 1 -1.7963 5.1361 1.6997 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5140 -0.8899 32 1 1.8933 -0.5137 -0.8901 33 1 1.8934 -0.5139 0.8898 34 1 3.9954 0.8311 0.6658 35 1 3.8498 1.0379 -1.0962 36 1 3.4410 3.5483 0.1316 37 1 7.9685 4.0728 -0.1729 38 1 9.6508 6.3413 -0.0533 39 1 9.6871 8.7371 0.2275 40 1 2.2721 2.1229 1.9979 41 1 0.6292 3.7539 4.3996 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715065967.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:25 Heat of formation + Delta-G solvation = -14.857098 kcal Electronic energy + Delta-G solvation = -25659.018079 eV Core-core repulsion = 21858.839870 eV Total energy + Delta-G solvation = -3800.178210 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.15489 -39.61843 -37.65228 -36.78751 -36.11414 -33.84826 -32.41158 -31.49261 -30.05758 -29.72581 -28.12077 -25.67153 -24.10197 -23.48245 -22.56758 -21.26467 -20.48603 -19.99625 -19.18720 -18.25206 -17.24111 -16.86627 -16.78908 -15.80722 -15.75403 -15.55539 -15.38935 -14.73519 -14.51556 -14.14043 -14.01379 -13.63377 -13.24919 -13.14068 -12.99119 -12.87471 -12.56794 -12.24831 -12.17798 -12.13341 -11.48301 -11.00037 -10.95568 -10.87407 -10.75737 -10.46844 -10.46513 -10.22153 -10.07882 -9.95070 -9.61014 -9.54756 -9.09861 -8.96706 -8.78587 -7.94088 -7.05823 -5.81882 -3.11847 -0.04410 1.15081 1.17523 1.72163 1.98843 2.80321 3.13352 3.25381 3.36273 3.41641 3.46863 3.48041 4.20334 4.39122 4.54255 4.70088 4.74318 4.96150 5.29339 5.34108 5.41611 5.51827 5.52852 5.71164 5.84368 5.87188 5.92243 5.93039 5.98695 6.10529 6.38931 6.40786 6.45474 6.53764 6.57285 6.66404 6.75714 6.98581 7.23365 7.65772 7.68101 7.70644 8.27301 8.35098 9.47135 10.00454 10.36359 11.39709 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.012384 B = 0.003411 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2260.525491 B = 8207.000997 C =10084.024357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.133 4.133 3 C 0.162 3.838 4 H 0.055 0.945 5 C 0.114 3.886 6 N -0.703 5.703 7 C 0.583 3.417 8 O -0.534 6.534 9 C -0.214 4.214 10 C -0.073 4.073 11 C -0.007 4.007 12 C -0.172 4.172 13 C 0.103 3.897 14 N -0.620 5.620 15 H 0.418 0.582 16 C 0.570 3.430 17 O -0.537 6.537 18 C -0.282 4.282 19 S 0.282 5.718 20 N -0.722 5.722 21 C -0.242 4.242 22 H 0.073 0.927 23 C -0.008 4.008 24 N -0.928 5.928 25 Si 0.902 3.098 26 H -0.286 1.286 27 H -0.292 1.292 28 H -0.285 1.285 29 H 0.032 0.968 30 H 0.085 0.915 31 H 0.040 0.960 32 H 0.043 0.957 33 H 0.057 0.943 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.409 0.591 37 H 0.158 0.842 38 H 0.151 0.849 39 H 0.166 0.834 40 H 0.385 0.615 41 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.015 6.674 -8.920 20.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.174 4.174 3 C 0.051 3.949 4 H 0.073 0.927 5 C -0.010 4.010 6 N -0.354 5.354 7 C 0.367 3.633 8 O -0.413 6.413 9 C -0.336 4.336 10 C -0.106 4.106 11 C -0.024 4.024 12 C -0.197 4.197 13 C -0.021 4.021 14 N -0.257 5.257 15 H 0.256 0.744 16 C 0.364 3.636 17 O -0.417 6.417 18 C -0.403 4.403 19 S 0.554 5.446 20 N -0.365 5.365 21 C -0.373 4.373 22 H 0.091 0.909 23 C -0.204 4.204 24 N -0.575 5.575 25 Si 0.733 3.267 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.212 1.212 29 H 0.051 0.949 30 H 0.104 0.896 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.246 0.754 37 H 0.176 0.824 38 H 0.169 0.831 39 H 0.183 0.817 40 H 0.219 0.781 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 15.035 6.512 -8.800 18.598 hybrid contribution 0.615 0.889 0.474 1.180 sum 15.650 7.401 -8.326 19.210 Atomic orbital electron populations 1.21770 0.95645 0.99669 1.03313 1.22062 0.97048 0.98200 1.00077 1.20589 0.89610 0.93069 0.91614 0.92693 1.21793 0.95988 0.81642 1.01574 1.45907 1.06323 1.11532 1.71606 1.17037 0.82892 0.85922 0.77493 1.90784 1.56090 1.44292 1.50139 1.24531 0.98782 0.98923 1.11380 1.19979 0.96098 0.94557 0.99976 1.19267 0.92876 0.92297 0.98000 1.21326 0.96121 0.92468 1.09813 1.21413 0.89965 0.93042 0.97644 1.42997 1.05943 1.12250 1.64531 0.74397 1.15765 0.83012 0.86743 0.78055 1.91017 1.34153 1.65973 1.50520 1.24288 0.99548 0.98084 1.18423 1.84709 1.02990 0.91870 1.65019 1.42460 1.16886 1.65905 1.11216 1.19145 0.91904 1.28291 0.97963 0.90897 1.24726 0.98009 1.01393 0.96304 1.69642 1.35198 1.48766 1.03913 0.86352 0.84248 0.79230 0.76869 1.21269 1.21745 1.21178 0.94851 0.89606 0.94098 0.93792 0.92451 0.91274 0.91300 0.75361 0.82411 0.83122 0.81655 0.78081 0.93365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 9.18 37.16 0.34 -2.23 16 2 C -0.13 -2.24 5.61 -26.73 -0.15 -2.39 16 3 C 0.16 2.93 2.59 -67.93 -0.18 2.75 16 4 H 0.06 1.01 8.08 -51.93 -0.42 0.59 16 5 C 0.11 1.89 5.23 -4.04 -0.02 1.87 16 6 N -0.70 -11.85 5.38 -61.43 -0.33 -12.18 16 7 C 0.58 9.80 7.80 -12.58 -0.10 9.70 16 8 O -0.53 -10.03 16.75 5.27 0.09 -9.94 16 9 C -0.21 -3.17 6.36 -37.32 -0.24 -3.41 16 10 C -0.07 -0.93 9.82 -40.50 -0.40 -1.33 16 11 C -0.01 -0.09 6.08 -105.08 -0.64 -0.72 16 12 C -0.17 -1.29 10.29 -37.17 -0.38 -1.67 16 13 C 0.10 0.59 11.11 -16.92 -0.19 0.40 16 14 N -0.62 -5.17 5.23 -14.86 -0.08 -5.25 16 15 H 0.42 2.35 8.87 -40.82 -0.36 1.99 16 16 C 0.57 7.70 7.71 -15.08 -0.12 7.58 16 17 O -0.54 -9.23 17.89 4.96 0.09 -9.14 16 18 C -0.28 -3.91 6.48 -37.76 -0.24 -4.15 16 19 S 0.28 4.24 22.27 -107.50 -2.39 1.85 16 20 N -0.72 -16.30 4.51 -53.42 -0.24 -16.54 16 21 C -0.24 -6.11 7.75 -15.06 -0.12 -6.22 16 22 H 0.07 1.79 7.32 -52.49 -0.38 1.41 16 23 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 24 N -0.93 -26.68 13.06 55.49 0.72 -25.95 16 25 Si 0.90 21.63 29.55 -169.99 -5.02 16.61 16 26 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 27 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 28 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 29 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.09 1.79 5.99 -51.93 -0.31 1.48 16 31 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 35 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.41 7.13 7.21 -40.82 -0.29 6.84 16 37 H 0.16 1.77 7.98 -52.49 -0.42 1.35 16 38 H 0.15 0.69 8.06 -52.48 -0.42 0.27 16 39 H 0.17 0.17 8.06 -52.49 -0.42 -0.25 16 40 H 0.39 9.53 7.80 -40.82 -0.32 9.21 16 41 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 364.00 15.07 5.49 5.49 Total: -1.00 -33.10 364.00 -9.23 -42.33 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: -5.03 Total: 12.86 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: -2.52 Total: -0.12 kcal Atomic # 7 Polarization: -60.00 SS G_CDS: 0.08 Total: -59.92 kcal Atomic # 8 Polarization: -19.26 SS G_CDS: 0.18 Total: -19.08 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: 4.24 SS G_CDS: -2.39 Total: 1.85 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.10 -9.23 -42.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715065967.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.475 kcal (2) G-P(sol) polarization free energy of solvation -33.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds