Wall clock time and date at job start Tue Mar 31 2020 18:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47080 * 2 1 4 4 H 1.08994 * 109.47567 * 305.00833 * 3 2 1 5 5 C 1.52995 * 109.47104 * 185.00361 * 3 2 1 6 6 N 1.46500 * 109.47361 * 185.00342 * 5 3 2 7 7 C 1.34770 * 120.00423 * 180.02562 * 6 5 3 8 8 O 1.21610 * 119.99949 * 0.02562 * 7 6 5 9 9 C 1.47297 * 120.00444 * 180.02562 * 7 6 5 10 10 C 1.34217 * 124.79680 * 179.72414 * 9 7 6 11 11 C 1.39570 * 115.53429 * 179.85039 * 10 9 7 12 12 C 1.47754 * 129.59832 * 180.16000 * 11 10 9 13 13 C 1.34053 * 119.55863 * 180.26642 * 12 11 10 14 14 N 1.36557 * 121.42507 * 0.02562 * 13 12 11 15 15 H 0.97000 * 119.15754 * 179.97438 * 14 13 12 16 16 C 1.34302 * 121.67741 * 0.02562 * 14 13 12 17 17 O 1.21954 * 119.69224 * 180.02562 * 16 14 13 18 18 C 1.39392 * 112.90061 * 0.42368 * 11 10 9 19 19 S 1.75569 * 124.78822 * 0.02562 * 9 7 6 20 20 N 1.46505 * 109.46692 * 65.00756 * 3 2 1 21 21 C 1.36931 * 119.99788 * 274.99780 * 20 3 2 22 22 H 1.08002 * 120.00438 * 0.02562 * 21 20 3 23 23 C 1.38817 * 119.99680 * 179.72358 * 21 20 3 24 24 N 1.31614 * 119.99888 * 0.27479 * 23 21 20 25 25 Si 1.86803 * 119.99862 * 180.27671 * 23 21 20 26 26 H 1.48496 * 109.47141 * 59.99751 * 25 23 21 27 27 H 1.48490 * 109.47071 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.46993 * 300.00028 * 25 23 21 29 29 H 1.08999 * 109.47396 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46888 * 299.98914 * 1 2 3 31 31 H 1.08998 * 109.47562 * 59.98997 * 1 2 3 32 32 H 1.09005 * 109.46888 * 240.01086 * 2 1 3 33 33 H 1.08993 * 109.47875 * 120.00680 * 2 1 3 34 34 H 1.09005 * 109.47349 * 305.00426 * 5 3 2 35 35 H 1.09002 * 109.47351 * 65.00597 * 5 3 2 36 36 H 0.96998 * 119.99598 * 0.02562 * 6 5 3 37 37 H 1.08000 * 122.23177 * 0.03168 * 10 9 7 38 38 H 1.08007 * 120.21913 * 0.25427 * 12 11 10 39 39 H 1.07999 * 119.28573 * 179.97438 * 13 12 11 40 40 H 0.97000 * 119.99792 * 94.99575 * 20 3 2 41 41 H 0.97005 * 119.99715 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9817 -0.8417 5 6 3.5647 1.4444 -0.1258 6 7 4.0630 2.8168 -0.0060 7 6 5.3855 3.0631 -0.0869 8 8 6.1653 2.1461 -0.2599 9 6 5.8866 4.4430 0.0342 10 6 7.1800 4.7962 -0.0264 11 6 7.4378 6.1612 0.1087 12 6 8.7270 6.8829 0.0872 13 6 8.7423 8.2142 0.2435 14 7 7.5892 8.9232 0.4236 15 1 7.6386 9.8857 0.5338 16 6 6.3887 8.3218 0.4531 17 8 5.3819 8.9905 0.6157 18 6 6.2807 6.9160 0.2942 19 16 4.8767 5.8569 0.2855 20 7 1.6525 2.0974 1.2520 21 6 0.4157 2.6733 1.3691 22 1 -0.2743 2.6445 0.5387 23 6 0.0465 3.2888 2.5573 24 7 0.8871 3.3235 3.5694 25 14 -1.6436 4.0677 2.7197 26 1 -2.6878 3.0325 2.5123 27 1 -1.7900 4.6544 4.0760 28 1 -1.7963 5.1361 1.6997 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5140 -0.8899 32 1 1.8933 -0.5137 -0.8901 33 1 1.8934 -0.5139 0.8898 34 1 3.9954 0.8311 0.6658 35 1 3.8498 1.0379 -1.0962 36 1 3.4410 3.5483 0.1316 37 1 7.9685 4.0728 -0.1729 38 1 9.6508 6.3413 -0.0533 39 1 9.6871 8.7371 0.2275 40 1 2.2721 2.1229 1.9979 41 1 0.6292 3.7539 4.3996 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715065967.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:24 Heat of formation + Delta-G solvation = -39.318589 kcal Electronic energy + Delta-G solvation = -25660.078809 eV Core-core repulsion = 21858.839870 eV Total energy + Delta-G solvation = -3801.238940 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.04324 -40.94220 -38.75338 -38.22573 -37.07249 -35.36663 -34.18374 -32.40830 -31.51322 -30.88059 -29.60021 -26.83851 -25.52784 -24.73752 -23.89862 -22.35961 -21.77976 -21.33079 -20.11598 -19.44586 -18.97718 -17.91709 -17.68909 -17.09743 -16.83683 -16.78415 -16.71454 -16.27076 -15.74133 -15.45961 -15.35441 -14.92746 -14.60226 -14.52841 -14.28121 -13.97308 -13.76599 -13.62311 -13.05898 -13.04298 -12.98051 -12.80917 -12.74945 -12.39911 -12.15643 -12.03119 -11.87364 -11.64465 -11.49829 -11.37186 -11.30001 -10.88704 -10.55978 -10.24390 -10.07409 -8.98793 -8.81622 -7.88420 -5.15409 -1.07590 0.09919 0.42424 0.70219 0.99421 1.49227 1.50313 1.55429 1.90152 2.00277 2.04944 2.46746 2.58878 3.38375 3.46771 3.56434 3.74697 3.82805 3.87998 3.92176 4.24532 4.35957 4.46780 4.50652 4.56402 4.62271 4.73198 4.86555 4.95562 5.01437 5.07836 5.09933 5.20298 5.23569 5.35351 5.55120 5.60718 5.73579 5.76964 5.88545 6.31195 6.31602 6.84062 6.92166 7.39852 8.11158 8.35588 9.34163 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.012384 B = 0.003411 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2260.525491 B = 8207.000997 C =10084.024357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.128 4.128 3 C 0.161 3.839 4 H 0.058 0.942 5 C 0.120 3.880 6 N -0.706 5.706 7 C 0.584 3.416 8 O -0.556 6.556 9 C -0.226 4.226 10 C -0.059 4.059 11 C 0.006 3.994 12 C -0.184 4.184 13 C 0.130 3.870 14 N -0.601 5.601 15 H 0.434 0.566 16 C 0.557 3.443 17 O -0.591 6.591 18 C -0.305 4.305 19 S 0.209 5.791 20 N -0.729 5.729 21 C -0.219 4.219 22 H 0.080 0.920 23 C -0.070 4.070 24 N -0.966 5.966 25 Si 0.955 3.045 26 H -0.279 1.279 27 H -0.304 1.304 28 H -0.281 1.281 29 H 0.053 0.947 30 H 0.047 0.953 31 H 0.048 0.952 32 H 0.078 0.922 33 H 0.047 0.953 34 H 0.061 0.939 35 H 0.091 0.909 36 H 0.406 0.594 37 H 0.178 0.822 38 H 0.191 0.809 39 H 0.230 0.770 40 H 0.372 0.628 41 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.077 6.984 -10.659 23.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.168 4.168 3 C 0.053 3.947 4 H 0.076 0.924 5 C -0.004 4.004 6 N -0.356 5.356 7 C 0.370 3.630 8 O -0.437 6.437 9 C -0.347 4.347 10 C -0.092 4.092 11 C -0.011 4.011 12 C -0.208 4.208 13 C 0.007 3.993 14 N -0.238 5.238 15 H 0.275 0.725 16 C 0.353 3.647 17 O -0.476 6.476 18 C -0.426 4.426 19 S 0.480 5.520 20 N -0.370 5.370 21 C -0.351 4.351 22 H 0.098 0.902 23 C -0.262 4.262 24 N -0.617 5.617 25 Si 0.786 3.214 26 H -0.206 1.206 27 H -0.230 1.230 28 H -0.208 1.208 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.097 0.903 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.109 0.891 36 H 0.242 0.758 37 H 0.195 0.805 38 H 0.208 0.792 39 H 0.247 0.753 40 H 0.204 0.796 41 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 18.122 6.814 -10.598 22.071 hybrid contribution -0.095 0.808 0.902 1.215 sum 18.026 7.622 -9.696 21.842 Atomic orbital electron populations 1.21702 0.96041 1.00619 1.01758 1.21969 0.96576 0.96953 1.01306 1.20767 0.90792 0.93659 0.89502 0.92376 1.21748 0.94589 0.81601 1.02413 1.45954 1.06563 1.11491 1.71577 1.17238 0.82532 0.86538 0.76704 1.90757 1.56396 1.45133 1.51456 1.24315 0.99455 0.97503 1.13441 1.20315 0.95563 0.95562 0.97756 1.19732 0.94162 0.91651 0.95545 1.21844 0.95336 0.93229 1.10438 1.22451 0.90649 0.92799 0.93447 1.43005 1.05299 1.13375 1.62070 0.72542 1.15901 0.83990 0.86558 0.78225 1.90983 1.36248 1.66789 1.53547 1.24310 0.99143 0.98513 1.20634 1.84834 1.05547 0.93716 1.67890 1.42582 1.15845 1.66192 1.12380 1.19449 0.92474 1.25761 0.97395 0.90191 1.25345 1.00832 1.03394 0.96649 1.69789 1.36749 1.50949 1.04190 0.85475 0.81347 0.78554 0.76011 1.20560 1.23044 1.20770 0.92766 0.93377 0.93245 0.90310 0.93375 0.92091 0.89086 0.75800 0.80458 0.79186 0.75325 0.79573 0.94463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.84 9.18 71.98 0.66 -4.18 16 2 C -0.13 -4.09 5.61 30.59 0.17 -3.92 16 3 C 0.16 5.78 2.59 44.99 0.12 5.89 16 4 H 0.06 2.07 8.08 -2.39 -0.02 2.05 16 5 C 0.12 3.94 5.23 86.38 0.45 4.39 16 6 N -0.71 -24.40 5.38 -466.51 -2.51 -26.92 16 7 C 0.58 19.98 7.80 86.63 0.68 20.65 16 8 O -0.56 -20.77 16.75 -4.06 -0.07 -20.83 16 9 C -0.23 -6.83 6.36 23.74 0.15 -6.68 16 10 C -0.06 -1.41 9.82 21.67 0.21 -1.20 16 11 C 0.01 0.12 6.08 -20.16 -0.12 0.00 16 12 C -0.18 -1.86 10.29 23.83 0.25 -1.61 16 13 C 0.13 0.76 11.11 83.00 0.92 1.68 16 14 N -0.60 -8.21 5.23 -319.29 -1.67 -9.88 16 15 H 0.43 3.50 8.87 -92.71 -0.82 2.68 16 16 C 0.56 14.96 7.71 85.22 0.66 15.62 16 17 O -0.59 -21.25 17.89 -5.17 -0.09 -21.35 16 18 C -0.31 -8.53 6.48 23.45 0.15 -8.38 16 19 S 0.21 6.76 22.27 -56.49 -1.26 5.50 16 20 N -0.73 -33.61 4.51 -322.93 -1.46 -35.06 16 21 C -0.22 -11.23 7.75 84.04 0.65 -10.58 16 22 H 0.08 3.94 7.32 -2.91 -0.02 3.91 16 23 C -0.07 -3.86 5.50 84.86 0.47 -3.40 16 24 N -0.97 -57.85 13.06 21.65 0.28 -57.56 16 25 Si 0.96 45.71 29.55 68.60 2.03 47.74 16 26 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 27 H -0.30 -15.02 7.11 99.48 0.71 -14.31 16 28 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 29 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.05 1.98 5.99 -2.38 -0.01 1.97 16 31 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.08 2.03 8.14 -2.38 -0.02 2.01 16 33 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 35 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 36 H 0.41 14.87 7.21 -92.71 -0.67 14.20 16 37 H 0.18 3.55 7.98 -2.91 -0.02 3.52 16 38 H 0.19 0.49 8.06 -2.91 -0.02 0.46 16 39 H 0.23 -1.43 8.06 -2.91 -0.02 -1.45 16 40 H 0.37 19.11 7.80 -92.71 -0.72 18.38 16 41 H 0.25 14.68 8.31 -92.70 -0.77 13.91 16 Total: -1.00 -77.48 364.00 -0.43 -77.92 By element: Atomic # 1 Polarization: 33.28 SS G_CDS: -1.10 Total: 32.17 kcal Atomic # 6 Polarization: 2.87 SS G_CDS: 5.41 Total: 8.28 kcal Atomic # 7 Polarization: -124.07 SS G_CDS: -5.35 Total: -129.42 kcal Atomic # 8 Polarization: -42.02 SS G_CDS: -0.16 Total: -42.18 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Atomic # 16 Polarization: 6.76 SS G_CDS: -1.26 Total: 5.50 kcal Total: -77.48 -0.43 -77.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715065967.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.599 kcal (2) G-P(sol) polarization free energy of solvation -77.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds