Wall clock time and date at job start Tue Mar 31 2020 19:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.47023 * 2 1 4 4 N 1.46496 * 109.46850 * 120.00017 * 2 1 3 5 5 C 1.36936 * 120.00483 * 274.99854 * 4 2 1 6 6 H 1.08001 * 119.99684 * 0.02562 * 5 4 2 7 7 C 1.38810 * 120.00203 * 180.02562 * 5 4 2 8 8 N 1.31618 * 119.99976 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99832 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47351 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47418 * 119.99710 * 9 7 5 12 12 H 1.48505 * 109.47001 * 239.99384 * 9 7 5 13 13 C 1.53003 * 109.46787 * 240.00026 * 2 1 3 14 14 H 1.09003 * 109.46588 * 174.99972 * 13 2 1 15 15 C 1.52999 * 109.47117 * 294.99827 * 13 2 1 16 16 N 1.46495 * 109.47190 * 55.00205 * 13 2 1 17 17 C 1.34779 * 120.00032 * 154.99755 * 16 13 2 18 18 O 1.21632 * 119.99875 * 359.97438 * 17 16 13 19 19 C 1.47276 * 119.99758 * 180.02562 * 17 16 13 20 20 C 1.35081 * 122.42704 * 179.97438 * 19 17 16 21 21 S 1.71000 * 109.14246 * 179.97438 * 20 19 17 22 22 C 1.75993 * 90.59242 * 0.02562 * 21 20 19 23 23 C 1.47873 * 125.31921 * 180.02562 * 22 21 20 24 24 C 1.46857 * 127.14055 * 0.32515 * 23 22 21 25 25 C 1.34305 * 106.00839 * 180.11867 * 24 23 22 26 26 O 1.34173 * 109.05259 * 359.60459 * 25 24 23 27 27 C 1.34007 * 110.79766 * 0.26282 * 26 25 24 28 28 N 1.29877 * 109.36219 * 0.25949 * 22 21 20 29 29 H 1.08996 * 109.47023 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46821 * 299.99866 * 1 2 3 31 31 H 1.09001 * 109.47224 * 59.99516 * 1 2 3 32 32 H 0.97011 * 119.99640 * 95.00154 * 4 2 1 33 33 H 0.97004 * 119.99679 * 179.97438 * 8 7 5 34 34 H 1.08997 * 109.46853 * 60.00431 * 15 13 2 35 35 H 1.08999 * 109.47010 * 179.97438 * 15 13 2 36 36 H 1.08996 * 109.47168 * 300.00332 * 15 13 2 37 37 H 0.97004 * 119.99986 * 335.00092 * 16 13 2 38 38 H 1.08007 * 125.42693 * 0.02562 * 20 19 17 39 39 H 1.07998 * 126.99954 * 0.02580 * 24 23 22 40 40 H 1.08002 * 125.47798 * 179.87384 * 25 24 23 41 41 H 1.08007 * 125.78583 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1491 -0.0076 2.3758 6 1 1.8919 1.0402 2.4244 7 6 2.6123 -0.6619 3.5090 8 7 2.9252 -1.9389 3.4498 9 14 2.7900 0.2698 5.1183 10 1 2.3752 1.6820 4.9212 11 1 1.9297 -0.3595 6.1523 12 1 4.2070 0.2277 5.5608 13 6 2.0400 -0.7213 -1.2493 14 1 3.1263 -0.6443 -1.2952 15 6 1.6352 -2.1955 -1.1880 16 7 1.4559 -0.1036 -2.4424 17 6 2.0913 -0.1938 -3.6276 18 8 3.1499 -0.7875 -3.7065 19 6 1.5042 0.4277 -4.8268 20 6 2.0988 0.3680 -6.0383 21 16 1.1307 1.1955 -7.1794 22 6 -0.0449 1.5829 -5.9284 23 6 -1.2911 2.3518 -6.1349 24 6 -1.7821 2.9226 -7.3957 25 6 -2.9424 3.5309 -7.0998 26 8 -3.1983 3.3737 -5.7921 27 6 -2.2238 2.6719 -5.1976 28 7 0.3554 1.0922 -4.7945 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 2.2490 -1.6319 1.1525 33 1 3.2492 -2.3960 4.2417 34 1 0.5489 -2.2723 -1.1421 35 1 1.9981 -2.7092 -2.0782 36 1 2.0698 -2.6550 -0.3003 37 1 0.6118 0.3702 -2.3793 38 1 3.0358 -0.1247 -6.2522 39 1 -1.3062 2.8663 -8.3636 40 1 -3.5709 4.0578 -7.8025 41 1 -2.1854 2.4053 -4.1516 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717431239.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:37 Heat of formation + Delta-G solvation = 37.707126 kcal Electronic energy + Delta-G solvation = -25442.493932 eV Core-core repulsion = 21644.595078 eV Total energy + Delta-G solvation = -3797.898854 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.84430 -40.53946 -38.80798 -36.83650 -33.90093 -33.85740 -31.78501 -31.08116 -29.54050 -29.31006 -28.17283 -26.18454 -24.49039 -23.98294 -22.59044 -22.13724 -20.66884 -19.47358 -19.14953 -19.00927 -17.83396 -17.46365 -16.55048 -16.44976 -15.84836 -15.47648 -15.26310 -14.68663 -14.54146 -14.24700 -14.04796 -13.74050 -13.60550 -13.40550 -13.34793 -12.82305 -12.65505 -12.41209 -12.20984 -11.94253 -11.60815 -11.26270 -10.94453 -10.85377 -10.82036 -10.46422 -10.27578 -10.22652 -10.00875 -9.91502 -9.90052 -9.64122 -9.46352 -8.93457 -8.81389 -8.54534 -6.98860 -5.77224 -3.06514 0.03062 0.84620 1.27922 1.28382 1.61245 2.44479 2.58938 3.27564 3.40668 3.43788 3.49305 3.51596 3.60138 4.32814 4.38350 4.59895 4.69456 4.93631 5.00847 5.06989 5.24942 5.37024 5.49631 5.58545 5.65231 5.67377 5.71229 5.81771 5.85213 6.10125 6.18624 6.32845 6.43633 6.49035 6.59022 6.66448 6.74939 6.91109 7.10205 7.12800 7.70603 7.74208 8.33152 8.41496 9.52666 10.08095 10.43206 11.45489 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.015965 B = 0.002482 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.455081 B =11279.872846 C =12581.996784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.169 3.831 3 H 0.052 0.948 4 N -0.719 5.719 5 C -0.239 4.239 6 H 0.071 0.929 7 C -0.013 4.013 8 N -0.932 5.932 9 Si 0.907 3.093 10 H -0.280 1.280 11 H -0.292 1.292 12 H -0.292 1.292 13 C 0.134 3.866 14 H 0.089 0.911 15 C -0.159 4.159 16 N -0.698 5.698 17 C 0.587 3.413 18 O -0.536 6.536 19 C 0.022 3.978 20 C -0.220 4.220 21 S 0.176 5.824 22 C 0.130 3.870 23 C -0.139 4.139 24 C -0.199 4.199 25 C -0.027 4.027 26 O -0.175 6.175 27 C 0.040 3.960 28 N -0.442 5.442 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.034 0.966 32 H 0.386 0.614 33 H 0.255 0.745 34 H 0.056 0.944 35 H 0.050 0.950 36 H 0.078 0.922 37 H 0.406 0.594 38 H 0.192 0.808 39 H 0.156 0.844 40 H 0.209 0.791 41 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.320 9.536 -26.926 30.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.058 3.942 3 H 0.070 0.930 4 N -0.363 5.363 5 C -0.370 4.370 6 H 0.089 0.911 7 C -0.209 4.209 8 N -0.580 5.580 9 Si 0.739 3.261 10 H -0.206 1.206 11 H -0.219 1.219 12 H -0.219 1.219 13 C 0.030 3.970 14 H 0.108 0.892 15 C -0.217 4.217 16 N -0.350 5.350 17 C 0.370 3.630 18 O -0.413 6.413 19 C -0.114 4.114 20 C -0.362 4.362 21 S 0.435 5.565 22 C -0.146 4.146 23 C -0.144 4.144 24 C -0.219 4.219 25 C -0.094 4.094 26 O -0.070 6.070 27 C -0.033 4.033 28 N -0.158 5.158 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.053 0.947 32 H 0.222 0.778 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.096 0.904 37 H 0.244 0.756 38 H 0.209 0.791 39 H 0.174 0.826 40 H 0.225 0.775 41 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -10.945 9.578 -27.263 30.900 hybrid contribution 0.437 -0.175 1.538 1.609 sum -10.508 9.403 -25.724 29.336 Atomic orbital electron populations 1.22531 0.99229 1.01290 0.99834 1.20350 0.92259 0.95570 0.86027 0.93015 1.42462 1.78225 1.10787 1.04810 1.19271 1.36623 0.93974 0.87108 0.91069 1.24745 1.02040 0.96010 0.98106 1.69670 1.50791 1.08655 1.28863 0.86113 0.77313 0.78773 0.83945 1.20562 1.21889 1.21872 1.21412 0.99092 0.92994 0.83528 0.89249 1.22142 1.01612 0.95651 1.02321 1.46087 1.25806 1.55439 1.07675 1.17120 0.84077 0.79713 0.82128 1.90821 1.21980 1.43324 1.85209 1.20239 0.92681 1.03005 0.95427 1.26500 1.06987 1.06362 0.96313 1.83752 1.13141 1.46542 1.13081 1.24761 0.97895 1.01398 0.90572 1.19035 0.94473 1.06357 0.94573 1.22761 0.97675 1.03446 0.98008 1.23925 0.98783 1.03830 0.82844 1.83948 1.43094 1.58054 1.21902 1.24426 0.85923 0.94079 0.98896 1.67009 1.12788 1.10666 1.25296 0.92808 0.92352 0.94714 0.77774 0.93507 0.92463 0.93093 0.90351 0.75625 0.79080 0.82598 0.77464 0.76569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.93 9.01 37.16 0.33 -2.60 16 2 C 0.17 3.35 2.93 -67.93 -0.20 3.15 16 3 H 0.05 1.06 8.08 -51.93 -0.42 0.64 16 4 N -0.72 -17.83 5.03 -53.43 -0.27 -18.10 16 5 C -0.24 -6.57 9.93 -15.06 -0.15 -6.72 16 6 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 7 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 8 N -0.93 -28.06 13.06 55.49 0.72 -27.34 16 9 Si 0.91 22.41 29.55 -169.99 -5.02 17.38 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 12 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 13 C 0.13 2.43 2.62 -67.93 -0.18 2.25 16 14 H 0.09 1.82 7.58 -51.93 -0.39 1.43 16 15 C -0.16 -2.80 9.00 37.16 0.33 -2.47 16 16 N -0.70 -10.97 4.98 -54.93 -0.27 -11.24 16 17 C 0.59 9.57 7.76 -12.59 -0.10 9.47 16 18 O -0.54 -10.24 16.31 5.25 0.09 -10.16 16 19 C 0.02 0.30 6.64 -84.92 -0.56 -0.26 16 20 C -0.22 -2.46 10.56 29.61 0.31 -2.14 16 21 S 0.18 1.47 23.07 -107.50 -2.48 -1.01 16 22 C 0.13 1.34 7.46 -14.44 -0.11 1.23 16 23 C -0.14 -1.21 6.32 -103.25 -0.65 -1.86 16 24 C -0.20 -1.24 11.04 -37.48 -0.41 -1.66 16 25 C -0.03 -0.14 12.04 29.34 0.35 0.21 16 26 O -0.18 -1.28 10.54 6.85 0.07 -1.20 16 27 C 0.04 0.32 12.05 29.95 0.36 0.68 16 28 N -0.44 -5.45 10.03 -8.11 -0.08 -5.53 16 29 H 0.05 0.94 6.56 -51.93 -0.34 0.60 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.03 0.49 6.29 -51.93 -0.33 0.16 16 32 H 0.39 10.10 5.77 -40.82 -0.24 9.86 16 33 H 0.26 7.43 8.31 -40.82 -0.34 7.10 16 34 H 0.06 0.94 6.56 -51.93 -0.34 0.60 16 35 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.08 1.51 6.29 -51.93 -0.33 1.18 16 37 H 0.41 5.74 6.05 -40.82 -0.25 5.49 16 38 H 0.19 1.95 7.99 -52.48 -0.42 1.53 16 39 H 0.16 0.66 8.06 -52.49 -0.42 0.24 16 40 H 0.21 0.26 8.06 -52.49 -0.42 -0.16 16 41 H 0.22 1.35 8.06 -52.48 -0.42 0.93 16 LS Contribution 364.54 15.07 5.49 5.49 Total: -1.00 -33.44 364.54 -7.22 -40.66 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: -4.71 Total: 12.23 kcal Atomic # 6 Polarization: -0.43 SS G_CDS: -0.76 Total: -1.19 kcal Atomic # 7 Polarization: -62.32 SS G_CDS: 0.10 Total: -62.21 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: 0.16 Total: -11.36 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.38 kcal Atomic # 16 Polarization: 1.47 SS G_CDS: -2.48 Total: -1.01 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.44 -7.22 -40.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717431239.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.372 kcal (2) G-P(sol) polarization free energy of solvation -33.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds