Wall clock time and date at job start Tue Mar 31 2020 19:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.47023 * 2 1 4 4 N 1.46496 * 109.46850 * 120.00017 * 2 1 3 5 5 C 1.36936 * 120.00483 * 274.99854 * 4 2 1 6 6 H 1.08001 * 119.99684 * 0.02562 * 5 4 2 7 7 C 1.38810 * 120.00203 * 180.02562 * 5 4 2 8 8 N 1.31618 * 119.99976 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99832 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47351 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47418 * 119.99710 * 9 7 5 12 12 H 1.48505 * 109.47001 * 239.99384 * 9 7 5 13 13 C 1.53003 * 109.46787 * 240.00026 * 2 1 3 14 14 H 1.09003 * 109.46588 * 174.99972 * 13 2 1 15 15 C 1.52999 * 109.47117 * 294.99827 * 13 2 1 16 16 N 1.46495 * 109.47190 * 55.00205 * 13 2 1 17 17 C 1.34779 * 120.00032 * 154.99755 * 16 13 2 18 18 O 1.21632 * 119.99875 * 359.97438 * 17 16 13 19 19 C 1.47276 * 119.99758 * 180.02562 * 17 16 13 20 20 C 1.35081 * 122.42704 * 179.97438 * 19 17 16 21 21 S 1.71000 * 109.14246 * 179.97438 * 20 19 17 22 22 C 1.75993 * 90.59242 * 0.02562 * 21 20 19 23 23 C 1.47873 * 125.31921 * 180.02562 * 22 21 20 24 24 C 1.46857 * 127.14055 * 0.32515 * 23 22 21 25 25 C 1.34305 * 106.00839 * 180.11867 * 24 23 22 26 26 O 1.34173 * 109.05259 * 359.60459 * 25 24 23 27 27 C 1.34007 * 110.79766 * 0.26282 * 26 25 24 28 28 N 1.29877 * 109.36219 * 0.25949 * 22 21 20 29 29 H 1.08996 * 109.47023 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46821 * 299.99866 * 1 2 3 31 31 H 1.09001 * 109.47224 * 59.99516 * 1 2 3 32 32 H 0.97011 * 119.99640 * 95.00154 * 4 2 1 33 33 H 0.97004 * 119.99679 * 179.97438 * 8 7 5 34 34 H 1.08997 * 109.46853 * 60.00431 * 15 13 2 35 35 H 1.08999 * 109.47010 * 179.97438 * 15 13 2 36 36 H 1.08996 * 109.47168 * 300.00332 * 15 13 2 37 37 H 0.97004 * 119.99986 * 335.00092 * 16 13 2 38 38 H 1.08007 * 125.42693 * 0.02562 * 20 19 17 39 39 H 1.07998 * 126.99954 * 0.02580 * 24 23 22 40 40 H 1.08002 * 125.47798 * 179.87384 * 25 24 23 41 41 H 1.08007 * 125.78583 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1491 -0.0076 2.3758 6 1 1.8919 1.0402 2.4244 7 6 2.6123 -0.6619 3.5090 8 7 2.9252 -1.9389 3.4498 9 14 2.7900 0.2698 5.1183 10 1 2.3752 1.6820 4.9212 11 1 1.9297 -0.3595 6.1523 12 1 4.2070 0.2277 5.5608 13 6 2.0400 -0.7213 -1.2493 14 1 3.1263 -0.6443 -1.2952 15 6 1.6352 -2.1955 -1.1880 16 7 1.4559 -0.1036 -2.4424 17 6 2.0913 -0.1938 -3.6276 18 8 3.1499 -0.7875 -3.7065 19 6 1.5042 0.4277 -4.8268 20 6 2.0988 0.3680 -6.0383 21 16 1.1307 1.1955 -7.1794 22 6 -0.0449 1.5829 -5.9284 23 6 -1.2911 2.3518 -6.1349 24 6 -1.7821 2.9226 -7.3957 25 6 -2.9424 3.5309 -7.0998 26 8 -3.1983 3.3737 -5.7921 27 6 -2.2238 2.6719 -5.1976 28 7 0.3554 1.0922 -4.7945 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 2.2490 -1.6319 1.1525 33 1 3.2492 -2.3960 4.2417 34 1 0.5489 -2.2723 -1.1421 35 1 1.9981 -2.7092 -2.0782 36 1 2.0698 -2.6550 -0.3003 37 1 0.6118 0.3702 -2.3793 38 1 3.0358 -0.1247 -6.2522 39 1 -1.3062 2.8663 -8.3636 40 1 -3.5709 4.0578 -7.8025 41 1 -2.1854 2.4053 -4.1516 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717431239.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:36 Heat of formation + Delta-G solvation = 14.387047 kcal Electronic energy + Delta-G solvation = -25443.505167 eV Core-core repulsion = 21644.595078 eV Total energy + Delta-G solvation = -3798.910088 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.33557 -41.62906 -39.96528 -38.38121 -35.65194 -34.46802 -33.57278 -31.79478 -31.02847 -30.07985 -29.83146 -27.12798 -26.18018 -25.33701 -23.98434 -22.60840 -21.60984 -20.71047 -20.30730 -19.86704 -19.43586 -18.50474 -17.65692 -17.01515 -16.96168 -16.68835 -16.42947 -16.16640 -15.89087 -15.63496 -15.21763 -14.98523 -14.84860 -14.59128 -14.20981 -13.95603 -13.79818 -13.52676 -13.19976 -13.13851 -13.05575 -13.00096 -12.83246 -12.67026 -12.08419 -12.07023 -11.69473 -11.64057 -11.56002 -11.30504 -11.02110 -10.97346 -10.60969 -10.22471 -9.96516 -9.24601 -9.04448 -7.94040 -5.23130 -0.75886 0.10276 0.46045 0.48069 1.06494 1.47967 1.48840 1.58657 1.72883 2.06279 2.16234 2.31041 2.57593 2.76896 3.39657 3.63074 3.82989 3.86901 3.94837 4.03816 4.05133 4.12741 4.19785 4.29031 4.56504 4.57400 4.67241 4.76437 4.83656 4.86098 4.93284 4.99658 5.14627 5.16845 5.22359 5.41353 5.43640 5.53183 5.59272 6.08199 6.23471 6.27967 6.55123 7.07638 7.34627 8.07477 8.31951 9.29692 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.015965 B = 0.002482 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.455081 B =11279.872846 C =12581.996784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.167 3.833 3 H 0.046 0.954 4 N -0.732 5.732 5 C -0.237 4.237 6 H 0.077 0.923 7 C -0.076 4.076 8 N -0.969 5.969 9 Si 0.973 3.027 10 H -0.265 1.265 11 H -0.293 1.293 12 H -0.296 1.296 13 C 0.147 3.853 14 H 0.062 0.938 15 C -0.149 4.149 16 N -0.690 5.690 17 C 0.586 3.414 18 O -0.572 6.572 19 C -0.002 4.002 20 C -0.230 4.230 21 S 0.262 5.738 22 C 0.118 3.882 23 C -0.163 4.163 24 C -0.209 4.209 25 C -0.019 4.019 26 O -0.184 6.184 27 C 0.034 3.966 28 N -0.461 5.461 29 H 0.052 0.948 30 H 0.046 0.954 31 H 0.070 0.930 32 H 0.377 0.623 33 H 0.251 0.749 34 H 0.071 0.929 35 H 0.052 0.948 36 H 0.057 0.943 37 H 0.416 0.584 38 H 0.196 0.804 39 H 0.176 0.824 40 H 0.247 0.753 41 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.165 11.490 -29.276 34.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.058 3.942 3 H 0.064 0.936 4 N -0.375 5.375 5 C -0.369 4.369 6 H 0.095 0.905 7 C -0.268 4.268 8 N -0.620 5.620 9 Si 0.802 3.198 10 H -0.190 1.190 11 H -0.220 1.220 12 H -0.224 1.224 13 C 0.042 3.958 14 H 0.080 0.920 15 C -0.207 4.207 16 N -0.342 5.342 17 C 0.371 3.629 18 O -0.452 6.452 19 C -0.138 4.138 20 C -0.373 4.373 21 S 0.522 5.478 22 C -0.158 4.158 23 C -0.169 4.169 24 C -0.229 4.229 25 C -0.084 4.084 26 O -0.079 6.079 27 C -0.040 4.040 28 N -0.177 5.177 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.089 0.911 32 H 0.211 0.789 33 H 0.059 0.941 34 H 0.090 0.910 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.255 0.745 38 H 0.213 0.787 39 H 0.193 0.807 40 H 0.263 0.737 41 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -12.840 11.589 -29.666 34.340 hybrid contribution 0.950 -0.689 2.044 2.357 sum -11.890 10.900 -27.622 31.987 Atomic orbital electron populations 1.22347 0.96640 1.01654 1.01050 1.20486 0.93876 0.94784 0.85022 0.93634 1.42638 1.78622 1.10534 1.05704 1.19638 1.34941 0.94275 0.88024 0.90500 1.25547 1.02883 0.96920 1.01460 1.69826 1.52554 1.10207 1.29397 0.85081 0.76659 0.78227 0.79827 1.18974 1.22041 1.22356 1.21007 0.97564 0.93320 0.83913 0.91980 1.22028 1.02305 0.95064 1.01340 1.45881 1.26018 1.55376 1.06931 1.17524 0.83536 0.79052 0.82833 1.90792 1.23558 1.45000 1.85866 1.19853 0.94086 1.05082 0.94798 1.26767 1.07545 1.06186 0.96826 1.83425 1.10335 1.43939 1.10123 1.25121 0.98771 1.00910 0.90969 1.19271 0.94286 1.07170 0.96132 1.23040 0.98214 1.03670 0.97976 1.24718 0.98731 1.02716 0.82276 1.83965 1.43001 1.57922 1.23037 1.24637 0.85967 0.93986 0.99367 1.66951 1.12569 1.11487 1.26716 0.92862 0.93486 0.91106 0.78879 0.94054 0.91012 0.92912 0.92397 0.74523 0.78655 0.80678 0.73717 0.75969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.29 9.01 71.98 0.65 -4.64 16 2 C 0.17 6.68 2.93 45.00 0.13 6.81 16 3 H 0.05 1.88 8.08 -2.39 -0.02 1.86 16 4 N -0.73 -37.02 5.03 -322.94 -1.63 -38.65 16 5 C -0.24 -13.16 9.93 84.03 0.83 -12.32 16 6 H 0.08 4.10 7.83 -2.91 -0.02 4.07 16 7 C -0.08 -4.38 5.50 84.86 0.47 -3.91 16 8 N -0.97 -59.78 13.06 21.65 0.28 -59.50 16 9 Si 0.97 46.53 29.55 68.60 2.03 48.56 16 10 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 11 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 12 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 13 C 0.15 5.45 2.62 44.99 0.12 5.56 16 14 H 0.06 2.65 7.58 -2.39 -0.02 2.63 16 15 C -0.15 -5.35 9.00 71.98 0.65 -4.70 16 16 N -0.69 -21.64 4.98 -445.93 -2.22 -23.86 16 17 C 0.59 19.30 7.76 86.62 0.67 19.98 16 18 O -0.57 -22.49 16.31 -4.13 -0.07 -22.55 16 19 C 0.00 -0.06 6.64 40.65 0.27 0.21 16 20 C -0.23 -4.90 10.56 67.09 0.71 -4.19 16 21 S 0.26 3.73 23.07 -56.49 -1.30 2.42 16 22 C 0.12 2.23 7.46 87.54 0.65 2.88 16 23 C -0.16 -2.52 6.32 -18.98 -0.12 -2.64 16 24 C -0.21 -2.00 11.04 23.63 0.26 -1.74 16 25 C -0.02 -0.13 12.04 66.92 0.81 0.67 16 26 O -0.18 -2.28 10.54 1.59 0.02 -2.27 16 27 C 0.03 0.48 12.05 67.31 0.81 1.29 16 28 N -0.46 -10.91 10.03 -179.57 -1.80 -12.71 16 29 H 0.05 1.80 6.56 -2.39 -0.02 1.79 16 30 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.07 1.86 6.29 -2.39 -0.02 1.85 16 32 H 0.38 20.37 5.77 -92.70 -0.54 19.84 16 33 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 34 H 0.07 2.33 6.56 -2.39 -0.02 2.32 16 35 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.06 2.32 6.29 -2.39 -0.02 2.31 16 37 H 0.42 11.37 6.05 -92.71 -0.56 10.80 16 38 H 0.20 3.86 7.99 -2.91 -0.02 3.83 16 39 H 0.18 0.85 8.06 -2.91 -0.02 0.82 16 40 H 0.25 -0.45 8.06 -2.91 -0.02 -0.47 16 41 H 0.22 2.57 8.06 -2.91 -0.02 2.54 16 Total: -1.00 -73.64 364.54 2.21 -71.42 By element: Atomic # 1 Polarization: 33.89 SS G_CDS: 0.00 Total: 33.89 kcal Atomic # 6 Polarization: -3.66 SS G_CDS: 6.91 Total: 3.25 kcal Atomic # 7 Polarization: -129.36 SS G_CDS: -5.37 Total: -134.73 kcal Atomic # 8 Polarization: -24.77 SS G_CDS: -0.05 Total: -24.82 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.03 Total: 48.56 kcal Atomic # 16 Polarization: 3.73 SS G_CDS: -1.30 Total: 2.42 kcal Total: -73.64 2.21 -71.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717431239.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.810 kcal (2) G-P(sol) polarization free energy of solvation -73.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds