Wall clock time and date at job start Tue Mar 31 2020 19:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47022 * 2 1 4 4 N 1.46498 * 109.47120 * 240.00144 * 2 1 3 5 5 C 1.36935 * 120.00239 * 84.99640 * 4 2 1 6 6 H 1.08004 * 120.00069 * 0.02562 * 5 4 2 7 7 C 1.38811 * 120.00368 * 180.02562 * 5 4 2 8 8 N 1.31624 * 119.99540 * 359.72375 * 7 5 4 9 9 Si 1.86800 * 120.00451 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46758 * 269.72270 * 9 7 5 11 11 H 1.48499 * 109.47026 * 29.72118 * 9 7 5 12 12 H 1.48496 * 109.47474 * 149.72153 * 9 7 5 13 13 C 1.52998 * 109.47443 * 120.00087 * 2 1 3 14 14 H 1.09001 * 109.47463 * 185.00072 * 13 2 1 15 15 C 1.52999 * 109.47112 * 64.99513 * 13 2 1 16 16 N 1.46504 * 109.47065 * 304.99901 * 13 2 1 17 17 C 1.34771 * 119.99931 * 205.00047 * 16 13 2 18 18 O 1.21632 * 120.00668 * 359.97438 * 17 16 13 19 19 C 1.47279 * 119.99688 * 180.02562 * 17 16 13 20 20 C 1.35078 * 122.42708 * 180.02562 * 19 17 16 21 21 S 1.71003 * 109.14515 * 179.97438 * 20 19 17 22 22 C 1.75998 * 90.58907 * 359.97438 * 21 20 19 23 23 C 1.47874 * 125.31856 * 179.97438 * 22 21 20 24 24 C 1.46854 * 127.14342 * 359.73610 * 23 22 21 25 25 C 1.34306 * 106.00801 * 179.86988 * 24 23 22 26 26 O 1.34170 * 109.05282 * 0.39330 * 25 24 23 27 27 C 1.34004 * 110.80124 * 359.73828 * 26 25 24 28 28 N 1.29880 * 109.36217 * 359.75661 * 22 21 20 29 29 H 1.08996 * 109.47329 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46933 * 300.00179 * 1 2 3 31 31 H 1.09004 * 109.47411 * 59.99789 * 1 2 3 32 32 H 0.97004 * 119.99747 * 265.00379 * 4 2 1 33 33 H 0.97000 * 120.00481 * 0.27542 * 8 7 5 34 34 H 1.09004 * 109.47231 * 179.97438 * 15 13 2 35 35 H 1.09001 * 109.47413 * 300.00590 * 15 13 2 36 36 H 1.08997 * 109.47031 * 60.00462 * 15 13 2 37 37 H 0.97001 * 119.99721 * 25.00195 * 16 13 2 38 38 H 1.08003 * 125.43339 * 359.94897 * 20 19 17 39 39 H 1.07995 * 126.99515 * 0.02562 * 24 23 22 40 40 H 1.08007 * 125.47189 * 180.13480 * 25 24 23 41 41 H 1.08003 * 125.78721 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1490 -0.0075 -2.3758 6 1 1.8925 1.0405 -2.4242 7 6 2.6112 -0.6619 -3.5093 8 7 2.9290 -1.9378 -3.4489 9 14 2.7902 0.2701 -5.1183 10 1 1.5246 0.1742 -5.8892 11 1 3.0895 1.6964 -4.8334 12 1 3.8987 -0.3195 -5.9112 13 6 2.0400 -0.7212 1.2492 14 1 3.1263 -0.6443 1.2951 15 6 1.6352 -2.1954 1.1880 16 7 1.4559 -0.1036 2.4424 17 6 2.0914 -0.1938 3.6275 18 8 3.1496 -0.7882 3.7066 19 6 1.5038 0.4267 4.8270 20 6 2.0984 0.3669 6.0384 21 16 1.1304 1.1943 7.1797 22 6 -0.0453 1.5818 5.9287 23 6 -1.2915 2.3506 6.1353 24 6 -1.7819 2.9225 7.3959 25 6 -2.9424 3.5305 7.1001 26 8 -3.1989 3.3723 5.7927 27 6 -2.2246 2.6701 5.1981 28 7 0.3548 1.0908 4.7948 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 2.2489 -1.6318 -1.1526 33 1 2.8364 -2.4217 -2.6134 34 1 1.9990 -2.7094 2.0777 35 1 0.5489 -2.2724 1.1420 36 1 2.0698 -2.6550 0.3003 37 1 0.6118 0.3701 2.3794 38 1 3.0357 -0.1253 6.2523 39 1 -1.3050 2.8677 8.3633 40 1 -3.5704 4.0581 7.8027 41 1 -2.1868 2.4027 4.1524 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717431240.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:39 Heat of formation + Delta-G solvation = 13.807338 kcal Electronic energy + Delta-G solvation = -25488.991757 eV Core-core repulsion = 21690.056530 eV Total energy + Delta-G solvation = -3798.935226 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.35781 -41.68496 -40.03321 -38.52488 -35.93843 -34.49608 -33.64899 -31.81378 -30.97172 -30.10186 -29.77998 -27.17635 -26.06378 -25.39354 -24.11366 -22.63027 -21.67766 -20.87644 -20.35962 -19.89914 -19.54219 -18.54502 -17.87591 -17.07908 -16.98829 -16.78540 -16.53904 -16.12558 -16.00861 -15.60808 -15.39810 -15.05051 -14.89655 -14.74617 -14.23505 -14.07025 -13.81913 -13.53306 -13.33559 -13.22685 -13.16370 -13.05213 -12.67256 -12.39547 -12.06762 -11.87089 -11.83538 -11.58982 -11.41628 -11.25882 -11.05346 -10.96738 -10.63983 -10.29572 -9.99444 -9.27371 -9.16314 -8.38879 -5.33589 -0.79115 0.07255 0.42751 0.44203 1.04127 1.58443 1.69369 1.69721 1.83254 2.00343 2.13339 2.26572 2.70185 2.74727 3.39954 3.58306 3.73244 3.75329 3.83829 3.92374 4.00501 4.09419 4.16416 4.17361 4.46085 4.53747 4.55978 4.72203 4.74080 4.82082 4.83042 4.89781 5.04466 5.12043 5.12464 5.34301 5.39527 5.48493 5.60572 6.05432 6.19356 6.48954 6.50195 7.00483 7.08703 7.98034 8.09000 9.12854 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.015947 B = 0.002489 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.362203 B =11244.682218 C =12547.003499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.173 3.827 3 H 0.043 0.957 4 N -0.744 5.744 5 C -0.328 4.328 6 H 0.067 0.933 7 C -0.105 4.105 8 N -0.976 5.976 9 Si 1.130 2.870 10 H -0.283 1.283 11 H -0.274 1.274 12 H -0.295 1.295 13 C 0.147 3.853 14 H 0.061 0.939 15 C -0.149 4.149 16 N -0.690 5.690 17 C 0.587 3.413 18 O -0.572 6.572 19 C -0.003 4.003 20 C -0.230 4.230 21 S 0.264 5.736 22 C 0.118 3.882 23 C -0.164 4.164 24 C -0.209 4.209 25 C -0.018 4.018 26 O -0.184 6.184 27 C 0.034 3.966 28 N -0.462 5.462 29 H 0.053 0.947 30 H 0.072 0.928 31 H 0.044 0.956 32 H 0.363 0.637 33 H 0.244 0.756 34 H 0.055 0.945 35 H 0.072 0.928 36 H 0.055 0.945 37 H 0.416 0.584 38 H 0.197 0.803 39 H 0.176 0.824 40 H 0.247 0.753 41 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.313 11.932 29.401 34.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.064 3.936 3 H 0.061 0.939 4 N -0.388 5.388 5 C -0.459 4.459 6 H 0.085 0.915 7 C -0.296 4.296 8 N -0.624 5.624 9 Si 0.955 3.045 10 H -0.210 1.210 11 H -0.199 1.199 12 H -0.221 1.221 13 C 0.042 3.958 14 H 0.079 0.921 15 C -0.208 4.208 16 N -0.343 5.343 17 C 0.371 3.629 18 O -0.452 6.452 19 C -0.139 4.139 20 C -0.373 4.373 21 S 0.525 5.475 22 C -0.158 4.158 23 C -0.169 4.169 24 C -0.229 4.229 25 C -0.084 4.084 26 O -0.079 6.079 27 C -0.040 4.040 28 N -0.178 5.178 29 H 0.072 0.928 30 H 0.091 0.909 31 H 0.064 0.936 32 H 0.198 0.802 33 H 0.054 0.946 34 H 0.074 0.926 35 H 0.091 0.909 36 H 0.074 0.926 37 H 0.255 0.745 38 H 0.214 0.786 39 H 0.194 0.806 40 H 0.263 0.737 41 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -12.585 12.002 28.320 33.233 hybrid contribution 0.323 -0.916 0.553 1.118 sum -12.262 11.086 28.873 33.270 Atomic orbital electron populations 1.22325 0.96524 1.01643 1.01088 1.20413 0.93884 0.94617 0.84713 0.93912 1.42630 1.79838 1.09835 1.06539 1.20377 1.40272 0.95363 0.89879 0.91453 1.27188 0.99550 0.97650 1.05210 1.70961 1.53683 1.09664 1.28063 0.82582 0.76538 0.73691 0.71652 1.20989 1.19942 1.22148 1.20998 0.97530 0.93353 0.83965 0.92058 1.22037 1.02392 0.94982 1.01355 1.45860 1.26037 1.55462 1.06896 1.17533 0.83509 0.79015 0.82816 1.90791 1.23571 1.44938 1.85872 1.19826 0.94130 1.05194 0.94747 1.26771 1.07547 1.06152 0.96825 1.83429 1.10252 1.43833 1.10028 1.25126 0.98788 1.00876 0.90973 1.19274 0.94268 1.07178 0.96161 1.23041 0.98218 1.03660 0.97971 1.24727 0.98722 1.02678 0.82266 1.83963 1.42991 1.57880 1.23069 1.24627 0.85998 0.94009 0.99348 1.66948 1.12579 1.11523 1.26767 0.92841 0.90928 0.93635 0.80221 0.94586 0.92615 0.90899 0.92644 0.74502 0.78632 0.80644 0.73675 0.76031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.35 9.01 71.98 0.65 -4.70 16 2 C 0.17 7.00 2.93 44.99 0.13 7.13 16 3 H 0.04 1.82 8.08 -2.39 -0.02 1.80 16 4 N -0.74 -37.83 5.03 -322.95 -1.62 -39.46 16 5 C -0.33 -18.53 9.93 84.03 0.83 -17.70 16 6 H 0.07 3.71 7.83 -2.91 -0.02 3.69 16 7 C -0.10 -6.16 5.50 84.86 0.47 -5.69 16 8 N -0.98 -61.91 13.70 21.65 0.30 -61.61 16 9 Si 1.13 52.72 29.92 68.60 2.05 54.77 16 10 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 11 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 12 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 13 C 0.15 5.45 2.62 44.99 0.12 5.57 16 14 H 0.06 2.62 7.58 -2.39 -0.02 2.60 16 15 C -0.15 -5.29 9.00 71.98 0.65 -4.64 16 16 N -0.69 -21.74 4.98 -445.93 -2.22 -23.97 16 17 C 0.59 19.34 7.76 86.62 0.67 20.01 16 18 O -0.57 -22.44 16.31 -4.13 -0.07 -22.50 16 19 C 0.00 -0.09 6.64 40.65 0.27 0.18 16 20 C -0.23 -4.88 10.56 67.09 0.71 -4.17 16 21 S 0.26 3.74 23.07 -56.49 -1.30 2.44 16 22 C 0.12 2.23 7.46 87.53 0.65 2.88 16 23 C -0.16 -2.52 6.32 -18.98 -0.12 -2.64 16 24 C -0.21 -1.99 11.04 23.63 0.26 -1.72 16 25 C -0.02 -0.13 12.04 66.92 0.81 0.68 16 26 O -0.18 -2.28 10.54 1.65 0.02 -2.26 16 27 C 0.03 0.48 12.05 67.31 0.81 1.29 16 28 N -0.46 -10.95 10.03 -179.56 -1.80 -12.75 16 29 H 0.05 1.83 6.56 -2.39 -0.02 1.81 16 30 H 0.07 1.94 6.29 -2.39 -0.02 1.93 16 31 H 0.04 1.68 8.14 -2.38 -0.02 1.67 16 32 H 0.36 19.25 4.60 -92.71 -0.43 18.82 16 33 H 0.24 15.44 6.77 -92.71 -0.63 14.81 16 34 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 35 H 0.07 2.34 6.56 -2.39 -0.02 2.33 16 36 H 0.05 2.16 6.29 -2.39 -0.02 2.14 16 37 H 0.42 11.46 6.05 -92.71 -0.56 10.90 16 38 H 0.20 3.84 7.99 -2.91 -0.02 3.82 16 39 H 0.18 0.83 8.06 -2.91 -0.02 0.81 16 40 H 0.25 -0.47 8.06 -2.91 -0.02 -0.49 16 41 H 0.22 2.59 8.06 -2.91 -0.02 2.56 16 Total: -1.00 -76.39 362.84 2.51 -73.89 By element: Atomic # 1 Polarization: 34.74 SS G_CDS: 0.25 Total: 34.99 kcal Atomic # 6 Polarization: -10.43 SS G_CDS: 6.91 Total: -3.53 kcal Atomic # 7 Polarization: -132.44 SS G_CDS: -5.35 Total: -137.79 kcal Atomic # 8 Polarization: -24.72 SS G_CDS: -0.05 Total: -24.77 kcal Atomic # 14 Polarization: 52.72 SS G_CDS: 2.05 Total: 54.77 kcal Atomic # 16 Polarization: 3.74 SS G_CDS: -1.30 Total: 2.44 kcal Total: -76.39 2.51 -73.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717431240.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.694 kcal (2) G-P(sol) polarization free energy of solvation -76.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds