Wall clock time and date at job start Tue Mar 31 2020 19:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.46978 * 2 1 4 4 N 1.46498 * 109.47096 * 119.99468 * 2 1 3 5 5 C 1.36934 * 120.00351 * 275.00586 * 4 2 1 6 6 H 1.08004 * 119.99836 * 359.97438 * 5 4 2 7 7 C 1.38812 * 119.99899 * 180.02562 * 5 4 2 8 8 N 1.31620 * 120.00373 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99907 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47149 * 89.99657 * 9 7 5 11 11 H 1.48492 * 109.47076 * 209.99647 * 9 7 5 12 12 H 1.48497 * 109.46857 * 329.99713 * 9 7 5 13 13 C 1.52996 * 109.47361 * 239.99938 * 2 1 3 14 14 H 1.09001 * 109.47125 * 299.99971 * 13 2 1 15 15 C 1.53000 * 109.47000 * 179.97438 * 13 2 1 16 16 N 1.46505 * 109.46973 * 59.99934 * 13 2 1 17 17 C 1.34779 * 119.99871 * 204.99954 * 16 13 2 18 18 O 1.21633 * 119.99886 * 0.02562 * 17 16 13 19 19 C 1.47269 * 120.00161 * 180.02562 * 17 16 13 20 20 C 1.35081 * 122.43114 * 180.02562 * 19 17 16 21 21 S 1.71000 * 109.14227 * 180.02562 * 20 19 17 22 22 C 1.75993 * 90.59275 * 359.97438 * 21 20 19 23 23 C 1.47873 * 125.31935 * 180.02562 * 22 21 20 24 24 C 1.46857 * 127.14056 * 0.28539 * 23 22 21 25 25 C 1.34305 * 106.00839 * 180.15269 * 24 23 22 26 26 O 1.34173 * 109.05259 * 359.60459 * 25 24 23 27 27 C 1.34004 * 110.80178 * 0.26286 * 26 25 24 28 28 N 1.29877 * 109.36176 * 0.26338 * 22 21 20 29 29 H 1.09001 * 109.47755 * 300.00143 * 1 2 3 30 30 H 1.09006 * 109.47141 * 60.00104 * 1 2 3 31 31 H 1.09001 * 109.46978 * 180.02562 * 1 2 3 32 32 H 0.97005 * 119.99662 * 94.99754 * 4 2 1 33 33 H 0.96998 * 120.00146 * 180.02562 * 8 7 5 34 34 H 1.08997 * 109.47227 * 59.99988 * 15 13 2 35 35 H 1.09007 * 109.46561 * 180.02562 * 15 13 2 36 36 H 1.08994 * 109.47365 * 299.99613 * 15 13 2 37 37 H 0.96991 * 120.00117 * 24.99923 * 16 13 2 38 38 H 1.08007 * 125.42682 * 0.05303 * 20 19 17 39 39 H 1.07999 * 126.99945 * 0.04654 * 24 23 22 40 40 H 1.08002 * 125.47798 * 179.87384 * 25 24 23 41 41 H 1.08001 * 125.79409 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1490 -0.0074 2.3758 6 1 1.8925 1.0406 2.4241 7 6 2.6122 -0.6616 3.5090 8 7 2.9254 -1.9386 3.4500 9 14 2.7912 0.2705 5.1180 10 1 1.5238 0.1794 5.8865 11 1 3.8960 -0.3226 5.9134 12 1 3.0959 1.6957 4.8331 13 6 2.0400 -0.7212 -1.2492 14 1 1.6767 -1.7489 -1.2492 15 6 3.5700 -0.7206 -1.2494 16 7 1.5517 -0.0306 -2.4454 17 6 1.4230 -0.7030 -3.6064 18 8 1.7119 -1.8833 -3.6608 19 6 0.9327 -0.0087 -4.8090 20 6 0.7845 -0.6344 -5.9969 21 16 0.1990 0.4838 -7.1505 22 6 0.1872 1.7579 -5.9365 23 6 -0.2321 3.1567 -6.1693 24 6 -0.7146 3.7400 -7.4277 25 6 -0.9711 5.0315 -7.1630 26 8 -0.6989 5.2765 -5.8722 27 6 -0.2562 4.1693 -5.2608 28 7 0.6091 1.2789 -4.8055 29 1 -0.3635 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 2.2490 -1.6317 1.1527 33 1 3.2487 -2.3958 4.2420 34 1 3.9337 -1.2341 -0.3594 35 1 3.9334 -1.2341 -2.1397 36 1 3.9330 0.3071 -1.2497 37 1 1.3210 0.9105 -2.4019 38 1 1.0009 -1.6753 -6.1876 39 1 -0.8367 3.2340 -8.3740 40 1 -1.3414 5.7555 -7.8737 41 1 0.0323 4.0933 -4.2228 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717431242.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:44 Heat of formation + Delta-G solvation = 33.433866 kcal Electronic energy + Delta-G solvation = -25414.209438 eV Core-core repulsion = 21616.125282 eV Total energy + Delta-G solvation = -3798.084156 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.84309 -40.53059 -38.76863 -36.67337 -33.91978 -33.85785 -31.74302 -31.08426 -29.62633 -29.37044 -28.36989 -26.13146 -24.07817 -23.93040 -22.23672 -22.13040 -20.59258 -20.02400 -19.34226 -18.98034 -17.80507 -17.44679 -16.52233 -16.44863 -15.86429 -15.48396 -15.29823 -14.60256 -14.55388 -14.11024 -13.80661 -13.62300 -13.57016 -13.36590 -13.25592 -13.01105 -12.65592 -12.42105 -12.23273 -11.81604 -11.66969 -11.16070 -10.94172 -10.84522 -10.82740 -10.66103 -10.28321 -10.19962 -10.02109 -9.90168 -9.84756 -9.65305 -9.46298 -9.00383 -8.76906 -8.54125 -6.97559 -5.76251 -3.05732 0.03138 0.84678 1.28005 1.28529 1.61356 2.44619 2.59056 3.27057 3.40937 3.43993 3.48942 3.50777 3.59796 4.32957 4.38364 4.60239 4.69580 4.93602 5.00752 5.06928 5.25022 5.32956 5.51156 5.58849 5.68954 5.71345 5.78218 5.81868 5.92726 6.14073 6.25110 6.41689 6.45318 6.56649 6.59115 6.65333 6.83773 6.94660 7.04480 7.13998 7.69904 7.74040 8.32988 8.41493 9.52745 10.08094 10.43449 11.46151 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.015643 B = 0.002506 C = 0.002218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.476499 B =11168.537602 C =12620.931305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.170 3.830 3 H 0.051 0.949 4 N -0.718 5.718 5 C -0.237 4.237 6 H 0.071 0.929 7 C -0.012 4.012 8 N -0.931 5.931 9 Si 0.907 3.093 10 H -0.290 1.290 11 H -0.292 1.292 12 H -0.282 1.282 13 C 0.134 3.866 14 H 0.086 0.914 15 C -0.152 4.152 16 N -0.696 5.696 17 C 0.589 3.411 18 O -0.536 6.536 19 C 0.023 3.977 20 C -0.220 4.220 21 S 0.176 5.824 22 C 0.130 3.870 23 C -0.139 4.139 24 C -0.199 4.199 25 C -0.027 4.027 26 O -0.175 6.175 27 C 0.040 3.960 28 N -0.442 5.442 29 H 0.055 0.945 30 H 0.036 0.964 31 H 0.046 0.954 32 H 0.385 0.615 33 H 0.255 0.745 34 H 0.082 0.918 35 H 0.046 0.954 36 H 0.051 0.949 37 H 0.406 0.594 38 H 0.192 0.808 39 H 0.156 0.844 40 H 0.209 0.791 41 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.923 12.076 -27.022 30.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.059 3.941 3 H 0.069 0.931 4 N -0.360 5.360 5 C -0.368 4.368 6 H 0.088 0.912 7 C -0.209 4.209 8 N -0.579 5.579 9 Si 0.738 3.262 10 H -0.218 1.218 11 H -0.218 1.218 12 H -0.208 1.208 13 C 0.030 3.970 14 H 0.105 0.895 15 C -0.211 4.211 16 N -0.346 5.346 17 C 0.371 3.629 18 O -0.414 6.414 19 C -0.113 4.113 20 C -0.362 4.362 21 S 0.434 5.566 22 C -0.146 4.146 23 C -0.144 4.144 24 C -0.219 4.219 25 C -0.094 4.094 26 O -0.070 6.070 27 C -0.033 4.033 28 N -0.157 5.157 29 H 0.074 0.926 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.220 0.780 33 H 0.065 0.935 34 H 0.100 0.900 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.241 0.759 38 H 0.209 0.791 39 H 0.174 0.826 40 H 0.225 0.775 41 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -7.913 11.817 -27.348 30.825 hybrid contribution 0.350 -0.202 1.546 1.598 sum -7.563 11.616 -25.802 29.289 Atomic orbital electron populations 1.22447 0.99009 1.01101 0.99915 1.20376 0.92135 0.95589 0.85999 0.93089 1.42291 1.78212 1.10689 1.04795 1.19189 1.36695 0.93873 0.87084 0.91151 1.24740 1.02090 0.95986 0.98040 1.69662 1.50723 1.08643 1.28886 0.86197 0.77269 0.78780 0.83967 1.21780 1.21811 1.20778 1.21423 0.94577 0.97623 0.83410 0.89546 1.22054 0.94749 1.01877 1.02375 1.45902 1.65187 1.14409 1.09085 1.17081 0.77984 0.85857 0.81987 1.90821 1.51043 1.14900 1.84603 1.20234 1.06197 0.89067 0.95815 1.26497 1.06349 1.06920 0.96427 1.83754 1.58472 1.00285 1.14051 1.24760 1.02459 0.96484 0.90911 1.19037 1.10531 0.89888 0.94990 1.22760 1.06316 0.94686 0.98132 1.23924 1.04312 0.97548 0.83603 1.83947 1.64624 1.35920 1.22511 1.24430 0.97803 0.82347 0.98729 1.67010 1.13339 1.10950 1.24417 0.92617 0.94476 0.93447 0.78046 0.93474 0.89955 0.93448 0.93002 0.75886 0.79099 0.82604 0.77468 0.76553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.03 9.33 37.16 0.35 -2.68 16 2 C 0.17 3.33 2.52 -67.93 -0.17 3.16 16 3 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 4 N -0.72 -17.64 4.43 -53.43 -0.24 -17.88 16 5 C -0.24 -6.46 9.93 -15.06 -0.15 -6.60 16 6 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 7 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 8 N -0.93 -27.95 13.06 55.49 0.72 -27.23 16 9 Si 0.91 22.27 29.55 -169.99 -5.02 17.25 16 10 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 11 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 C 0.13 2.41 2.21 -67.93 -0.15 2.26 16 14 H 0.09 1.72 7.58 -51.93 -0.39 1.32 16 15 C -0.15 -2.74 9.33 37.16 0.35 -2.39 16 16 N -0.70 -10.77 4.38 -54.93 -0.24 -11.01 16 17 C 0.59 9.48 7.76 -12.59 -0.10 9.38 16 18 O -0.54 -10.17 16.31 5.25 0.09 -10.08 16 19 C 0.02 0.30 6.64 -84.92 -0.56 -0.26 16 20 C -0.22 -2.45 10.56 29.61 0.31 -2.14 16 21 S 0.18 1.47 23.07 -107.50 -2.48 -1.01 16 22 C 0.13 1.33 7.46 -14.44 -0.11 1.23 16 23 C -0.14 -1.21 6.32 -103.25 -0.65 -1.86 16 24 C -0.20 -1.24 11.04 -37.48 -0.41 -1.66 16 25 C -0.03 -0.14 12.04 29.34 0.35 0.21 16 26 O -0.18 -1.28 10.54 6.86 0.07 -1.20 16 27 C 0.04 0.32 12.05 29.95 0.36 0.68 16 28 N -0.44 -5.39 10.03 -8.11 -0.08 -5.48 16 29 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 30 H 0.04 0.58 7.45 -51.93 -0.39 0.19 16 31 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.39 10.18 7.59 -40.82 -0.31 9.87 16 33 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 34 H 0.08 1.65 7.45 -51.93 -0.39 1.27 16 35 H 0.05 0.83 8.14 -51.92 -0.42 0.41 16 36 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.41 5.62 7.86 -40.82 -0.32 5.30 16 38 H 0.19 1.94 7.99 -52.48 -0.42 1.52 16 39 H 0.16 0.66 8.06 -52.49 -0.42 0.24 16 40 H 0.21 0.26 8.06 -52.49 -0.42 -0.16 16 41 H 0.22 1.35 8.06 -52.49 -0.42 0.92 16 LS Contribution 372.25 15.07 5.61 5.61 Total: -1.00 -33.05 372.25 -7.39 -40.44 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: -5.14 Total: 11.72 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: -0.68 Total: -1.13 kcal Atomic # 7 Polarization: -61.76 SS G_CDS: 0.17 Total: -61.59 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: 0.16 Total: -11.29 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Atomic # 16 Polarization: 1.47 SS G_CDS: -2.48 Total: -1.01 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.05 -7.39 -40.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717431242.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.878 kcal (2) G-P(sol) polarization free energy of solvation -33.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds