Wall clock time and date at job start Tue Mar 31 2020 19:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.46978 * 2 1 4 4 N 1.46498 * 109.47096 * 119.99468 * 2 1 3 5 5 C 1.36934 * 120.00351 * 275.00586 * 4 2 1 6 6 H 1.08004 * 119.99836 * 359.97438 * 5 4 2 7 7 C 1.38812 * 119.99899 * 180.02562 * 5 4 2 8 8 N 1.31620 * 120.00373 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99907 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47149 * 89.99657 * 9 7 5 11 11 H 1.48492 * 109.47076 * 209.99647 * 9 7 5 12 12 H 1.48497 * 109.46857 * 329.99713 * 9 7 5 13 13 C 1.52996 * 109.47361 * 239.99938 * 2 1 3 14 14 H 1.09001 * 109.47125 * 299.99971 * 13 2 1 15 15 C 1.53000 * 109.47000 * 179.97438 * 13 2 1 16 16 N 1.46505 * 109.46973 * 59.99934 * 13 2 1 17 17 C 1.34779 * 119.99871 * 204.99954 * 16 13 2 18 18 O 1.21633 * 119.99886 * 0.02562 * 17 16 13 19 19 C 1.47269 * 120.00161 * 180.02562 * 17 16 13 20 20 C 1.35081 * 122.43114 * 180.02562 * 19 17 16 21 21 S 1.71000 * 109.14227 * 180.02562 * 20 19 17 22 22 C 1.75993 * 90.59275 * 359.97438 * 21 20 19 23 23 C 1.47873 * 125.31935 * 180.02562 * 22 21 20 24 24 C 1.46857 * 127.14056 * 0.28539 * 23 22 21 25 25 C 1.34305 * 106.00839 * 180.15269 * 24 23 22 26 26 O 1.34173 * 109.05259 * 359.60459 * 25 24 23 27 27 C 1.34004 * 110.80178 * 0.26286 * 26 25 24 28 28 N 1.29877 * 109.36176 * 0.26338 * 22 21 20 29 29 H 1.09001 * 109.47755 * 300.00143 * 1 2 3 30 30 H 1.09006 * 109.47141 * 60.00104 * 1 2 3 31 31 H 1.09001 * 109.46978 * 180.02562 * 1 2 3 32 32 H 0.97005 * 119.99662 * 94.99754 * 4 2 1 33 33 H 0.96998 * 120.00146 * 180.02562 * 8 7 5 34 34 H 1.08997 * 109.47227 * 59.99988 * 15 13 2 35 35 H 1.09007 * 109.46561 * 180.02562 * 15 13 2 36 36 H 1.08994 * 109.47365 * 299.99613 * 15 13 2 37 37 H 0.96991 * 120.00117 * 24.99923 * 16 13 2 38 38 H 1.08007 * 125.42682 * 0.05303 * 20 19 17 39 39 H 1.07999 * 126.99945 * 0.04654 * 24 23 22 40 40 H 1.08002 * 125.47798 * 179.87384 * 25 24 23 41 41 H 1.08001 * 125.79409 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1490 -0.0074 2.3758 6 1 1.8925 1.0406 2.4241 7 6 2.6122 -0.6616 3.5090 8 7 2.9254 -1.9386 3.4500 9 14 2.7912 0.2705 5.1180 10 1 1.5238 0.1794 5.8865 11 1 3.8960 -0.3226 5.9134 12 1 3.0959 1.6957 4.8331 13 6 2.0400 -0.7212 -1.2492 14 1 1.6767 -1.7489 -1.2492 15 6 3.5700 -0.7206 -1.2494 16 7 1.5517 -0.0306 -2.4454 17 6 1.4230 -0.7030 -3.6064 18 8 1.7119 -1.8833 -3.6608 19 6 0.9327 -0.0087 -4.8090 20 6 0.7845 -0.6344 -5.9969 21 16 0.1990 0.4838 -7.1505 22 6 0.1872 1.7579 -5.9365 23 6 -0.2321 3.1567 -6.1693 24 6 -0.7146 3.7400 -7.4277 25 6 -0.9711 5.0315 -7.1630 26 8 -0.6989 5.2765 -5.8722 27 6 -0.2562 4.1693 -5.2608 28 7 0.6091 1.2789 -4.8055 29 1 -0.3635 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 2.2490 -1.6317 1.1527 33 1 3.2487 -2.3958 4.2420 34 1 3.9337 -1.2341 -0.3594 35 1 3.9334 -1.2341 -2.1397 36 1 3.9330 0.3071 -1.2497 37 1 1.3210 0.9105 -2.4019 38 1 1.0009 -1.6753 -6.1876 39 1 -0.8367 3.2340 -8.3740 40 1 -1.3414 5.7555 -7.8737 41 1 0.0323 4.0933 -4.2228 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717431242.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:44 Heat of formation + Delta-G solvation = 10.878105 kcal Electronic energy + Delta-G solvation = -25415.187529 eV Core-core repulsion = 21616.125282 eV Total energy + Delta-G solvation = -3799.062248 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.33422 -41.60370 -39.91156 -38.23538 -35.64510 -34.46407 -33.54767 -31.80460 -31.05954 -30.16549 -30.06949 -27.04859 -25.92638 -25.10824 -23.63474 -22.60661 -21.61438 -21.45257 -20.24011 -19.82417 -19.36917 -18.49348 -17.63383 -17.13711 -16.97501 -16.57313 -16.42153 -16.15653 -15.64648 -15.32937 -15.20144 -15.01871 -14.75786 -14.60030 -14.20521 -14.11067 -13.79900 -13.50284 -13.25576 -13.19305 -13.02902 -12.92415 -12.75358 -12.62388 -12.29875 -12.14738 -11.75297 -11.56030 -11.51179 -11.29504 -11.01320 -10.98319 -10.60439 -10.21718 -9.96267 -9.24226 -9.02068 -7.91509 -5.20822 -0.75294 0.10777 0.46728 0.48982 1.06726 1.49338 1.50693 1.58949 1.73468 2.06319 2.16312 2.32299 2.59342 2.77626 3.42348 3.62858 3.76578 3.86329 3.97976 4.06212 4.13181 4.17457 4.20275 4.32030 4.55493 4.57604 4.73995 4.77569 4.85579 4.86615 4.92420 5.02199 5.13570 5.14925 5.27846 5.41429 5.44836 5.48418 5.56175 6.08555 6.24302 6.28911 6.56273 7.09046 7.35542 8.07604 8.32204 9.31915 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.015643 B = 0.002506 C = 0.002218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.476499 B =11168.537602 C =12620.931305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.170 3.830 3 H 0.060 0.940 4 N -0.729 5.729 5 C -0.233 4.233 6 H 0.080 0.920 7 C -0.076 4.076 8 N -0.970 5.970 9 Si 0.972 3.028 10 H -0.290 1.290 11 H -0.299 1.299 12 H -0.267 1.267 13 C 0.149 3.851 14 H 0.064 0.936 15 C -0.143 4.143 16 N -0.687 5.687 17 C 0.588 3.412 18 O -0.572 6.572 19 C -0.001 4.001 20 C -0.231 4.231 21 S 0.260 5.740 22 C 0.118 3.882 23 C -0.163 4.163 24 C -0.209 4.209 25 C -0.019 4.019 26 O -0.184 6.184 27 C 0.034 3.966 28 N -0.460 5.460 29 H 0.046 0.954 30 H 0.066 0.934 31 H 0.033 0.967 32 H 0.372 0.628 33 H 0.250 0.750 34 H 0.057 0.943 35 H 0.049 0.951 36 H 0.062 0.938 37 H 0.416 0.584 38 H 0.196 0.804 39 H 0.176 0.824 40 H 0.247 0.753 41 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.073 14.630 -29.374 34.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.061 3.939 3 H 0.078 0.922 4 N -0.369 5.369 5 C -0.364 4.364 6 H 0.098 0.902 7 C -0.268 4.268 8 N -0.621 5.621 9 Si 0.801 3.199 10 H -0.217 1.217 11 H -0.226 1.226 12 H -0.192 1.192 13 C 0.043 3.957 14 H 0.083 0.917 15 C -0.201 4.201 16 N -0.338 5.338 17 C 0.372 3.628 18 O -0.452 6.452 19 C -0.137 4.137 20 C -0.374 4.374 21 S 0.520 5.480 22 C -0.158 4.158 23 C -0.168 4.168 24 C -0.229 4.229 25 C -0.085 4.085 26 O -0.079 6.079 27 C -0.040 4.040 28 N -0.176 5.176 29 H 0.065 0.935 30 H 0.085 0.915 31 H 0.053 0.947 32 H 0.205 0.795 33 H 0.058 0.942 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.081 0.919 37 H 0.253 0.747 38 H 0.213 0.787 39 H 0.193 0.807 40 H 0.263 0.737 41 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -9.097 14.443 -29.755 34.303 hybrid contribution 0.631 -0.910 2.055 2.335 sum -8.465 13.534 -27.699 31.970 Atomic orbital electron populations 1.22291 0.97608 1.00565 1.00899 1.20510 0.92878 0.95540 0.84958 0.92209 1.42449 1.78448 1.10243 1.05793 1.19578 1.34753 0.94260 0.87840 0.90235 1.25539 1.03022 0.96856 1.01414 1.69828 1.52633 1.10277 1.29330 0.85162 0.76674 0.78164 0.79890 1.21714 1.22572 1.19184 1.21019 0.94381 0.96464 0.83829 0.91741 1.21930 0.94792 1.02174 1.01199 1.45697 1.65106 1.14696 1.08295 1.17468 0.77110 0.85514 0.82663 1.90793 1.52650 1.16496 1.85278 1.19857 1.08664 0.89975 0.95230 1.26763 1.05669 1.07975 0.96970 1.83433 1.56056 0.97375 1.11139 1.25116 1.01685 0.97724 0.91250 1.19273 1.11682 0.89362 0.96525 1.23040 1.06640 0.95163 0.98069 1.24716 1.02623 0.98071 0.83048 1.83963 1.64590 1.35788 1.23605 1.24639 0.97641 0.82485 0.99192 1.66956 1.14490 1.10362 1.25815 0.93525 0.91486 0.94742 0.79547 0.94162 0.92432 0.93233 0.91883 0.74694 0.78680 0.80692 0.73730 0.75967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.56 9.33 71.98 0.67 -4.89 16 2 C 0.17 6.67 2.52 44.99 0.11 6.78 16 3 H 0.06 2.27 8.08 -2.39 -0.02 2.25 16 4 N -0.73 -36.40 4.43 -322.95 -1.43 -37.83 16 5 C -0.23 -12.67 9.93 84.03 0.83 -11.83 16 6 H 0.08 4.11 7.83 -2.91 -0.02 4.09 16 7 C -0.08 -4.35 5.50 84.86 0.47 -3.89 16 8 N -0.97 -59.70 13.06 21.65 0.28 -59.42 16 9 Si 0.97 46.09 29.55 68.60 2.03 48.12 16 10 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 11 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 12 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 13 C 0.15 5.40 2.21 44.99 0.10 5.50 16 14 H 0.06 2.66 7.58 -2.39 -0.02 2.64 16 15 C -0.14 -5.23 9.33 71.98 0.67 -4.55 16 16 N -0.69 -21.14 4.38 -445.93 -1.95 -23.10 16 17 C 0.59 19.04 7.76 86.62 0.67 19.71 16 18 O -0.57 -22.20 16.31 -4.14 -0.07 -22.26 16 19 C 0.00 -0.04 6.64 40.65 0.27 0.23 16 20 C -0.23 -4.87 10.56 67.09 0.71 -4.17 16 21 S 0.26 3.69 23.07 -56.49 -1.30 2.38 16 22 C 0.12 2.21 7.46 87.54 0.65 2.87 16 23 C -0.16 -2.51 6.32 -18.98 -0.12 -2.63 16 24 C -0.21 -2.01 11.04 23.63 0.26 -1.75 16 25 C -0.02 -0.14 12.04 66.92 0.81 0.67 16 26 O -0.18 -2.30 10.54 1.62 0.02 -2.28 16 27 C 0.03 0.48 12.05 67.31 0.81 1.29 16 28 N -0.46 -10.77 10.03 -179.57 -1.80 -12.57 16 29 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.07 2.01 7.45 -2.38 -0.02 1.99 16 31 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.37 20.40 7.59 -92.70 -0.70 19.70 16 33 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 34 H 0.06 2.39 7.45 -2.39 -0.02 2.38 16 35 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 36 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.42 11.14 7.86 -92.71 -0.73 10.41 16 38 H 0.20 3.82 7.99 -2.91 -0.02 3.80 16 39 H 0.18 0.85 8.06 -2.91 -0.02 0.83 16 40 H 0.25 -0.43 8.06 -2.91 -0.02 -0.45 16 41 H 0.22 2.58 8.06 -2.91 -0.02 2.55 16 Total: -1.00 -72.40 372.25 2.34 -70.06 By element: Atomic # 1 Polarization: 33.88 SS G_CDS: -0.35 Total: 33.54 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: 6.92 Total: 3.36 kcal Atomic # 7 Polarization: -128.01 SS G_CDS: -4.90 Total: -132.91 kcal Atomic # 8 Polarization: -24.49 SS G_CDS: -0.05 Total: -24.54 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Atomic # 16 Polarization: 3.69 SS G_CDS: -1.30 Total: 2.38 kcal Total: -72.40 2.34 -70.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717431242.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.936 kcal (2) G-P(sol) polarization free energy of solvation -72.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds