Wall clock time and date at job start Tue Mar 31 2020 19:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.47020 * 2 1 4 4 C 1.52998 * 109.47055 * 119.99572 * 2 1 3 5 5 N 1.46494 * 109.47558 * 175.00063 * 4 2 1 6 6 C 1.46495 * 120.00128 * 270.00445 * 5 4 2 7 7 C 1.34785 * 120.00123 * 89.99608 * 5 4 2 8 8 O 1.21631 * 119.99353 * 356.57193 * 7 5 4 9 9 C 1.47291 * 120.00110 * 176.56906 * 7 5 4 10 10 C 1.35167 * 122.41915 * 186.49011 * 9 7 5 11 11 S 1.70998 * 109.16353 * 180.02562 * 10 9 7 12 12 C 1.75996 * 90.59742 * 359.97438 * 11 10 9 13 13 C 1.47134 * 125.33139 * 179.97438 * 12 11 10 14 14 C 1.36240 * 125.95917 * 0.02677 * 13 12 11 15 15 C 1.40767 * 106.72516 * 179.97438 * 14 13 12 16 16 C 1.34838 * 107.07226 * 0.02562 * 15 14 13 17 17 O 1.34244 * 108.71770 * 359.73053 * 16 15 14 18 18 N 1.30125 * 109.34030 * 359.74207 * 12 11 10 19 19 N 1.46496 * 109.47378 * 239.99604 * 2 1 3 20 20 C 1.36933 * 120.00074 * 84.99950 * 19 2 1 21 21 H 1.08004 * 120.00249 * 0.02562 * 20 19 2 22 22 C 1.38817 * 120.00223 * 179.97438 * 20 19 2 23 23 N 1.31618 * 120.00017 * 180.02562 * 22 20 19 24 24 Si 1.86801 * 119.99562 * 0.02562 * 22 20 19 25 25 H 1.48502 * 109.47396 * 90.00041 * 24 22 20 26 26 H 1.48502 * 109.46539 * 209.99490 * 24 22 20 27 27 H 1.48497 * 109.47156 * 329.99384 * 24 22 20 28 28 H 1.09003 * 109.47020 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47096 * 300.00602 * 1 2 3 30 30 H 1.09003 * 109.46762 * 60.00714 * 1 2 3 31 31 H 1.09004 * 109.46948 * 295.00254 * 4 2 1 32 32 H 1.09000 * 109.47152 * 55.00047 * 4 2 1 33 33 H 1.08999 * 109.47415 * 95.94509 * 6 5 4 34 34 H 1.08999 * 109.47329 * 215.94988 * 6 5 4 35 35 H 1.09007 * 109.47015 * 335.94463 * 6 5 4 36 36 H 1.08001 * 125.41566 * 359.97374 * 10 9 7 37 37 H 1.07995 * 126.64250 * 359.97438 * 14 13 12 38 38 H 1.08005 * 126.46680 * 180.02562 * 15 14 13 39 39 H 1.08003 * 125.64185 * 180.02562 * 16 15 14 40 40 H 0.97003 * 120.00204 * 265.00398 * 19 2 1 41 41 H 0.97003 * 119.99898 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 3.5000 -0.8263 1.1907 6 6 4.1258 -1.9919 0.5615 7 6 4.2676 0.1493 1.7157 8 8 3.7494 1.1461 2.1821 9 6 5.7337 0.0085 1.7247 10 6 6.5428 0.8922 2.3504 11 16 8.1694 0.4060 2.1464 12 6 7.6534 -0.9916 1.2094 13 6 8.5496 -1.9984 0.6194 14 6 9.9093 -2.0076 0.7053 15 6 10.3519 -3.1437 0.0018 16 6 9.2550 -3.7665 -0.4748 17 8 8.1684 -3.0755 -0.0954 18 7 6.3550 -0.9979 1.1243 19 7 2.0184 -0.6907 -1.1961 20 6 2.1492 -0.0076 -2.3757 21 1 1.8927 1.0404 -2.4242 22 6 2.6125 -0.6619 -3.5089 23 7 2.7387 -0.0053 -4.6426 24 14 3.0568 -2.4744 -3.4248 25 1 1.8598 -3.2929 -3.7448 26 1 4.1326 -2.7663 -4.4060 27 1 3.5313 -2.8048 -2.0570 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 1.7516 -0.1581 2.1370 32 1 1.6054 -1.7197 1.2953 33 1 4.3761 -1.7558 -0.4728 34 1 5.0339 -2.2541 1.1043 35 1 3.4329 -2.8331 0.5847 36 1 6.2141 1.7668 2.8922 37 1 10.5279 -1.2834 1.2144 38 1 11.3768 -3.4575 -0.1311 39 1 9.2510 -4.6739 -1.0604 40 1 2.2491 -1.6319 -1.1525 41 1 3.0621 -0.4626 -5.4346 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717738707.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:26 Heat of formation + Delta-G solvation = 41.672696 kcal Electronic energy + Delta-G solvation = -26693.884107 eV Core-core repulsion = 22896.157213 eV Total energy + Delta-G solvation = -3797.726894 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.53339 -41.78342 -39.84681 -38.06395 -35.94488 -34.19518 -34.04965 -32.83152 -31.44068 -30.04569 -28.56952 -27.67951 -26.18901 -25.35938 -23.70875 -22.88628 -21.87377 -21.30259 -20.33074 -19.82209 -19.38112 -18.63440 -17.62407 -17.28775 -17.16443 -16.84971 -16.55900 -16.39534 -15.76223 -15.35226 -15.23552 -14.79873 -14.65394 -14.33527 -14.02517 -13.97478 -13.86229 -13.77092 -13.60227 -13.45975 -13.34306 -13.00732 -12.84461 -12.75803 -12.47049 -12.29062 -11.83831 -11.71654 -11.36516 -11.30541 -11.03720 -10.88204 -10.67095 -10.39616 -9.73952 -9.28022 -9.07383 -8.03844 -5.36107 -0.93790 -0.15865 0.31397 0.33206 1.18642 1.32764 1.37886 1.44366 1.70279 1.98267 2.07856 2.24180 2.46564 2.74865 3.27875 3.48923 3.58388 3.88739 3.98424 4.04015 4.06634 4.13930 4.18419 4.32933 4.45646 4.57379 4.67320 4.73411 4.73849 4.83794 4.92542 4.97161 5.00048 5.13609 5.20479 5.37647 5.48945 5.60889 5.73955 5.98372 6.17222 6.22113 6.34771 6.98805 7.06415 7.81106 8.03328 9.18290 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.010312 B = 0.004629 C = 0.003558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2714.661577 B = 6047.724530 C = 7867.642981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.156 3.844 3 H 0.021 0.979 4 C 0.112 3.888 5 N -0.584 5.584 6 C 0.080 3.920 7 C 0.580 3.420 8 O -0.570 6.570 9 C -0.008 4.008 10 C -0.224 4.224 11 S 0.328 5.672 12 C 0.077 3.923 13 C 0.008 3.992 14 C -0.153 4.153 15 C -0.215 4.215 16 C -0.018 4.018 17 O -0.184 6.184 18 N -0.448 5.448 19 N -0.741 5.741 20 C -0.223 4.223 21 H 0.044 0.956 22 C -0.065 4.065 23 N -0.987 5.987 24 Si 0.949 3.051 25 H -0.277 1.277 26 H -0.300 1.300 27 H -0.239 1.239 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.032 0.968 31 H 0.097 0.903 32 H 0.106 0.894 33 H 0.033 0.967 34 H 0.110 0.890 35 H 0.076 0.924 36 H 0.207 0.793 37 H 0.182 0.818 38 H 0.188 0.812 39 H 0.240 0.760 40 H 0.366 0.634 41 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.064 -8.482 18.588 27.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.047 3.953 3 H 0.040 0.960 4 C -0.011 4.011 5 N -0.312 5.312 6 C -0.063 4.063 7 C 0.366 3.634 8 O -0.450 6.450 9 C -0.144 4.144 10 C -0.367 4.367 11 S 0.587 5.413 12 C -0.196 4.196 13 C -0.045 4.045 14 C -0.175 4.175 15 C -0.233 4.233 16 C -0.088 4.088 17 O -0.080 6.080 18 N -0.164 5.164 19 N -0.386 5.386 20 C -0.354 4.354 21 H 0.062 0.938 22 C -0.256 4.256 23 N -0.638 5.638 24 Si 0.776 3.224 25 H -0.203 1.203 26 H -0.227 1.227 27 H -0.163 1.163 28 H 0.084 0.916 29 H 0.092 0.908 30 H 0.051 0.949 31 H 0.115 0.885 32 H 0.124 0.876 33 H 0.052 0.948 34 H 0.128 0.872 35 H 0.095 0.905 36 H 0.224 0.776 37 H 0.199 0.801 38 H 0.205 0.795 39 H 0.256 0.744 40 H 0.200 0.800 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 18.118 -7.850 18.719 27.208 hybrid contribution -1.011 -0.479 -1.075 1.551 sum 17.107 -8.328 17.644 25.949 Atomic orbital electron populations 1.22179 0.95818 1.02142 1.01001 1.20775 0.93828 0.94767 0.85960 0.96037 1.22013 0.78241 1.02780 0.98076 1.47580 1.06963 1.21384 1.55323 1.22421 0.99775 0.86233 0.97863 1.17520 0.85269 0.82608 0.77974 1.90737 1.74311 1.29935 1.50051 1.20009 0.95726 0.94741 1.03953 1.26965 0.98873 1.05588 1.05268 1.83088 1.01148 1.14458 1.42597 1.24976 0.91375 0.99658 1.03579 1.19132 0.91647 0.90303 1.03373 1.22230 0.91121 1.01232 1.02965 1.22163 1.01561 0.96616 1.02992 1.25214 0.82930 0.99261 1.01404 1.84195 1.37053 1.31669 1.55055 1.67544 1.06817 1.22728 1.19326 1.42624 1.79982 1.09426 1.06558 1.18934 1.35000 0.93990 0.87468 0.93767 1.25477 1.02299 1.02794 0.95017 1.69903 1.54994 1.37750 1.01193 0.85548 0.77647 0.80572 0.78681 1.20287 1.22700 1.16311 0.91642 0.90811 0.94851 0.88474 0.87631 0.94829 0.87242 0.90498 0.77580 0.80084 0.79461 0.74376 0.79963 0.93540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.37 9.49 71.98 0.68 -4.69 16 2 C 0.16 6.48 3.20 44.99 0.14 6.63 16 3 H 0.02 1.05 8.08 -2.39 -0.02 1.03 16 4 C 0.11 3.76 5.04 86.38 0.44 4.19 16 5 N -0.58 -21.42 2.73 -850.82 -2.32 -23.74 16 6 C 0.08 2.80 7.98 127.77 1.02 3.82 16 7 C 0.58 22.25 7.64 86.62 0.66 22.91 16 8 O -0.57 -23.89 16.28 -4.13 -0.07 -23.95 16 9 C -0.01 -0.27 6.47 40.70 0.26 -0.01 16 10 C -0.22 -5.54 10.56 67.11 0.71 -4.83 16 11 S 0.33 5.64 22.93 -56.49 -1.30 4.34 16 12 C 0.08 2.00 7.46 87.28 0.65 2.65 16 13 C 0.01 0.20 7.24 24.14 0.17 0.37 16 14 C -0.15 -2.42 10.63 22.42 0.24 -2.18 16 15 C -0.21 -2.81 10.88 22.11 0.24 -2.57 16 16 C -0.02 -0.29 12.08 67.04 0.81 0.52 16 17 O -0.18 -4.71 10.67 -6.63 -0.07 -4.78 16 18 N -0.45 -14.50 6.66 -180.11 -1.20 -15.70 16 19 N -0.74 -36.36 4.28 -322.94 -1.38 -37.74 16 20 C -0.22 -13.49 10.41 84.04 0.87 -12.61 16 21 H 0.04 3.00 8.06 -2.91 -0.02 2.98 16 22 C -0.07 -4.02 5.50 84.86 0.47 -3.55 16 23 N -0.99 -66.24 13.97 21.65 0.30 -65.94 16 24 Si 0.95 46.99 27.74 68.60 1.90 48.89 16 25 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 26 H -0.30 -15.16 7.11 99.48 0.71 -14.45 16 27 H -0.24 -10.50 5.23 99.48 0.52 -9.98 16 28 H 0.06 2.07 8.14 -2.39 -0.02 2.06 16 29 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 30 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.10 3.05 7.47 -2.39 -0.02 3.03 16 32 H 0.11 2.89 7.85 -2.39 -0.02 2.88 16 33 H 0.03 1.42 6.60 -2.39 -0.02 1.40 16 34 H 0.11 3.66 5.18 -2.39 -0.01 3.64 16 35 H 0.08 2.30 7.83 -2.38 -0.02 2.28 16 36 H 0.21 4.42 8.00 -2.91 -0.02 4.40 16 37 H 0.18 1.70 8.06 -2.91 -0.02 1.67 16 38 H 0.19 1.16 8.06 -2.91 -0.02 1.13 16 39 H 0.24 1.86 8.06 -2.91 -0.02 1.84 16 40 H 0.37 16.87 4.26 -92.71 -0.39 16.48 16 41 H 0.26 16.33 8.31 -92.71 -0.77 15.56 16 Total: -1.00 -84.82 359.52 3.73 -81.09 By element: Atomic # 1 Polarization: 26.40 SS G_CDS: 0.49 Total: 26.89 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: 7.37 Total: 10.65 kcal Atomic # 7 Polarization: -138.51 SS G_CDS: -4.60 Total: -143.12 kcal Atomic # 8 Polarization: -28.60 SS G_CDS: -0.14 Total: -28.74 kcal Atomic # 14 Polarization: 46.99 SS G_CDS: 1.90 Total: 48.89 kcal Atomic # 16 Polarization: 5.64 SS G_CDS: -1.30 Total: 4.34 kcal Total: -84.82 3.73 -81.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717738707.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.762 kcal (2) G-P(sol) polarization free energy of solvation -84.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds