Wall clock time and date at job start Tue Mar 31 2020 19:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47516 * 2 1 4 4 C 1.53007 * 109.47211 * 240.00061 * 2 1 3 5 5 C 1.52998 * 109.46975 * 175.00015 * 4 2 1 6 6 N 1.46500 * 109.47010 * 180.02562 * 5 4 2 7 7 C 1.36934 * 120.00291 * 180.02562 * 6 5 4 8 8 H 1.08006 * 119.99904 * 359.97438 * 7 6 5 9 9 C 1.38815 * 120.00323 * 179.97438 * 7 6 5 10 10 N 1.31619 * 119.99793 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 120.00163 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.47161 * 89.99725 * 11 9 7 13 13 H 1.48496 * 109.47252 * 210.00100 * 11 9 7 14 14 H 1.48501 * 109.47227 * 330.00205 * 11 9 7 15 15 N 1.46506 * 109.47262 * 120.00338 * 2 1 3 16 16 C 1.34777 * 119.99873 * 275.00296 * 15 2 1 17 17 O 1.21498 * 120.00013 * 359.97438 * 16 15 2 18 18 C 1.48346 * 120.00066 * 179.97438 * 16 15 2 19 19 C 1.41699 * 126.81414 * 179.71113 * 18 16 15 20 20 C 1.37157 * 103.79946 * 179.88877 * 19 18 16 21 21 C 1.47034 * 126.85703 * 180.11191 * 20 19 18 22 22 C 1.36193 * 125.33106 * 179.97438 * 21 20 19 23 23 C 1.37711 * 114.44251 * 179.79639 * 22 21 20 24 24 C 1.33741 * 115.19383 * 0.50005 * 23 22 21 25 25 S 1.75829 * 109.95613 * 359.73027 * 24 23 22 26 26 O 1.34570 * 106.28226 * 0.36732 * 20 19 18 27 27 N 1.20876 * 111.69285 * 359.74665 * 26 20 19 28 28 H 1.09001 * 109.47093 * 299.99896 * 1 2 3 29 29 H 1.09002 * 109.47121 * 59.99683 * 1 2 3 30 30 H 1.09002 * 109.46901 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.46869 * 294.99887 * 4 2 1 32 32 H 1.09000 * 109.46715 * 55.00379 * 4 2 1 33 33 H 1.09002 * 109.47050 * 299.99956 * 5 4 2 34 34 H 1.09000 * 109.47076 * 60.00044 * 5 4 2 35 35 H 0.97001 * 120.00192 * 359.97438 * 6 5 4 36 36 H 0.96992 * 119.99940 * 180.02562 * 10 9 7 37 37 H 0.96995 * 120.00050 * 94.72411 * 15 2 1 38 38 H 1.08002 * 128.10032 * 0.02562 * 19 18 16 39 39 H 1.08007 * 122.78221 * 359.97373 * 22 21 20 40 40 H 1.07999 * 122.40697 * 180.21308 * 23 22 21 41 41 H 1.07995 * 125.02450 * 179.72387 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5648 -0.6133 -1.3137 6 7 4.0531 -1.3033 -2.5102 7 6 5.3952 -1.3401 -2.7797 8 1 6.0937 -0.8599 -2.1103 9 6 5.8579 -1.9944 -3.9131 10 7 5.0067 -2.5799 -4.7285 11 14 7.6886 -2.0438 -4.2811 12 1 8.2890 -3.2445 -3.6459 13 1 7.8968 -2.1046 -5.7501 14 1 8.3356 -0.8218 -3.7395 15 7 2.0184 -0.6907 1.1962 16 6 2.1470 -0.0184 2.3572 17 8 1.8584 1.1605 2.4117 18 6 2.6410 -0.7179 3.5685 19 6 2.8361 -0.1546 4.8540 20 6 3.2955 -1.2060 5.6056 21 6 3.6587 -1.1795 7.0301 22 6 4.1121 -2.2449 7.7472 23 6 4.3897 -1.9667 9.0671 24 6 4.1629 -0.7033 9.4426 25 16 3.5684 0.2311 8.0769 26 8 3.3528 -2.2651 4.7775 27 7 2.9892 -1.9793 3.6607 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.7517 -1.7715 -1.2056 32 1 1.6054 -0.2616 -2.1370 33 1 3.8532 0.4370 -1.3573 34 1 3.9994 -1.0728 -0.4259 35 1 3.4259 -1.7349 -3.1112 36 1 5.3301 -3.0374 -5.5203 37 1 2.2453 -1.6328 1.1535 38 1 2.6615 0.8636 5.1690 39 1 4.2457 -3.2260 7.3158 40 1 4.7595 -2.7162 9.7511 41 1 4.3214 -0.3144 10.4375 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732714643.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:51 Heat of formation + Delta-G solvation = 45.825240 kcal Electronic energy + Delta-G solvation = -24871.467209 eV Core-core repulsion = 21073.920383 eV Total energy + Delta-G solvation = -3797.546826 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -46.24020 -41.02960 -38.70495 -38.01784 -36.20758 -35.32932 -34.14198 -33.52453 -32.08713 -29.70436 -29.47836 -26.55336 -25.86336 -25.32991 -24.07062 -23.29594 -22.23280 -21.67372 -20.50264 -19.43796 -19.19659 -19.03820 -18.16657 -17.54702 -17.29454 -16.74128 -16.35225 -16.15613 -15.58713 -15.54701 -15.24921 -15.12582 -14.87513 -14.47369 -14.30158 -14.20798 -13.72722 -13.59467 -13.39638 -13.16134 -12.96897 -12.91864 -12.68335 -12.44584 -12.30962 -12.05858 -12.02032 -11.82825 -11.74558 -11.69847 -11.51753 -11.44857 -10.98969 -10.31253 -9.52329 -9.35841 -9.05528 -7.99671 -5.29150 -0.75104 0.00119 0.28310 0.80384 0.93268 1.44287 1.46155 1.54819 1.71172 1.81998 1.90858 1.94666 2.52114 2.70462 3.22360 3.33470 3.54930 3.66884 3.94913 3.97929 4.02521 4.09271 4.21378 4.33343 4.47297 4.49940 4.56173 4.60504 4.64310 4.70742 4.77303 4.91738 5.05967 5.10610 5.21230 5.26277 5.26746 5.38386 5.42172 5.43822 6.17998 6.23127 6.73710 6.87690 7.29232 8.03277 8.28351 9.23505 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.012955 B = 0.002249 C = 0.002003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2160.849779 B =12446.250625 C =13973.413392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.150 3.850 3 H 0.081 0.919 4 C -0.119 4.119 5 C 0.153 3.847 6 N -0.745 5.745 7 C -0.251 4.251 8 H 0.069 0.931 9 C -0.073 4.073 10 N -0.966 5.966 11 Si 0.974 3.026 12 H -0.285 1.285 13 H -0.291 1.291 14 H -0.272 1.272 15 N -0.698 5.698 16 C 0.599 3.401 17 O -0.550 6.550 18 C -0.032 4.032 19 C -0.181 4.181 20 C 0.057 3.943 21 C -0.182 4.182 22 C -0.088 4.088 23 C -0.147 4.147 24 C -0.188 4.188 25 S 0.171 5.829 26 O 0.139 5.861 27 N -0.340 5.340 28 H 0.054 0.946 29 H 0.085 0.915 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.012 0.988 34 H 0.014 0.986 35 H 0.377 0.623 36 H 0.253 0.747 37 H 0.411 0.589 38 H 0.194 0.806 39 H 0.159 0.841 40 H 0.174 0.826 41 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.197 3.059 32.404 33.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.046 3.954 3 H 0.099 0.901 4 C -0.157 4.157 5 C 0.026 3.974 6 N -0.388 5.388 7 C -0.383 4.383 8 H 0.087 0.913 9 C -0.266 4.266 10 N -0.616 5.616 11 Si 0.803 3.197 12 H -0.212 1.212 13 H -0.217 1.217 14 H -0.197 1.197 15 N -0.349 5.349 16 C 0.383 3.617 17 O -0.427 6.427 18 C -0.189 4.189 19 C -0.204 4.204 20 C -0.008 4.008 21 C -0.300 4.300 22 C -0.121 4.121 23 C -0.176 4.176 24 C -0.325 4.325 25 S 0.436 5.564 26 O 0.060 5.940 27 N -0.039 5.039 28 H 0.073 0.927 29 H 0.104 0.896 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.109 0.891 33 H 0.030 0.970 34 H 0.032 0.968 35 H 0.209 0.791 36 H 0.062 0.938 37 H 0.247 0.753 38 H 0.211 0.789 39 H 0.177 0.823 40 H 0.191 0.809 41 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -7.680 4.523 31.282 32.527 hybrid contribution 1.259 -1.492 -0.358 1.984 sum -6.421 3.032 30.924 31.729 Atomic orbital electron populations 1.22102 0.92853 1.03128 1.03077 1.21044 0.95404 0.96686 0.82294 0.90112 1.21921 0.94562 1.01767 0.97498 1.20757 0.93563 0.94387 0.88655 1.42531 1.04537 1.65354 1.26336 1.19579 0.85242 1.28005 1.05442 0.91286 1.25584 1.02207 1.01068 0.97727 1.69801 1.34611 1.41675 1.15535 0.85135 0.79894 0.77958 0.76744 1.21203 1.21700 1.19721 1.46038 1.65214 1.14665 1.08970 1.16977 0.77407 0.85514 0.81789 1.90768 1.51582 1.15518 1.84802 1.23277 1.06848 0.91307 0.97424 1.22733 1.05387 1.02026 0.90269 1.21552 1.01534 0.86041 0.91664 1.21884 1.15606 1.00974 0.91488 1.21093 0.97309 0.99407 0.94311 1.20331 1.03794 0.97726 0.95731 1.26443 1.05123 0.97387 1.03539 1.84394 1.62935 1.09441 0.99602 1.84892 1.61061 1.34563 1.13490 1.74189 1.13774 1.16260 0.99726 0.92723 0.89620 0.91316 0.90514 0.89122 0.97047 0.96773 0.79122 0.93807 0.75281 0.78865 0.82310 0.80865 0.78176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.43 9.48 71.98 0.68 -2.74 16 2 C 0.15 4.11 2.57 44.99 0.12 4.23 16 3 H 0.08 2.45 7.58 -2.39 -0.02 2.43 16 4 C -0.12 -3.71 4.87 30.60 0.15 -3.56 16 5 C 0.15 6.35 6.15 86.38 0.53 6.89 16 6 N -0.74 -38.99 5.60 -343.45 -1.92 -40.91 16 7 C -0.25 -14.55 9.99 84.03 0.84 -13.71 16 8 H 0.07 3.92 7.83 -2.91 -0.02 3.89 16 9 C -0.07 -4.31 5.50 84.86 0.47 -3.84 16 10 N -0.97 -59.71 13.06 21.65 0.28 -59.43 16 11 Si 0.97 47.12 29.55 68.60 2.03 49.15 16 12 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 13 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 14 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 15 N -0.70 -19.72 4.53 -444.91 -2.01 -21.73 16 16 C 0.60 18.22 7.81 86.93 0.68 18.90 16 17 O -0.55 -19.01 16.61 -3.71 -0.06 -19.07 16 18 C -0.03 -0.87 7.17 42.79 0.31 -0.56 16 19 C -0.18 -4.13 10.77 22.87 0.25 -3.88 16 20 C 0.06 1.16 7.28 24.32 0.18 1.34 16 21 C -0.18 -2.83 6.45 24.10 0.16 -2.67 16 22 C -0.09 -1.04 10.17 21.67 0.22 -0.82 16 23 C -0.15 -1.11 10.15 21.12 0.21 -0.90 16 24 C -0.19 -1.26 11.21 66.80 0.75 -0.51 16 25 S 0.17 1.93 23.11 -56.49 -1.31 0.62 16 26 O 0.14 3.25 11.21 66.56 0.75 3.99 16 27 N -0.34 -9.23 11.81 -48.87 -0.58 -9.81 16 28 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 32 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 33 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.01 0.61 7.75 -2.39 -0.02 0.59 16 35 H 0.38 20.50 7.67 -92.71 -0.71 19.79 16 36 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 37 H 0.41 11.22 8.36 -92.71 -0.77 10.44 16 38 H 0.19 3.78 8.06 -2.91 -0.02 3.76 16 39 H 0.16 1.54 8.06 -2.91 -0.02 1.52 16 40 H 0.17 0.42 8.06 -2.91 -0.02 0.40 16 41 H 0.20 0.13 8.06 -2.91 -0.02 0.10 16 Total: -1.00 -72.29 374.96 2.30 -69.99 By element: Atomic # 1 Polarization: 29.47 SS G_CDS: -0.41 Total: 29.06 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: 5.53 Total: -1.86 kcal Atomic # 7 Polarization: -127.65 SS G_CDS: -4.23 Total: -131.88 kcal Atomic # 8 Polarization: -15.76 SS G_CDS: 0.68 Total: -15.08 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 2.03 Total: 49.15 kcal Atomic # 16 Polarization: 1.93 SS G_CDS: -1.31 Total: 0.62 kcal Total: -72.29 2.30 -69.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732714643.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.817 kcal (2) G-P(sol) polarization free energy of solvation -72.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds