Wall clock time and date at job start Tue Mar 31 2020 19:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47056 * 2 1 4 4 C 1.53003 * 109.47003 * 119.99612 * 2 1 3 5 5 N 1.46504 * 109.46804 * 175.00259 * 4 2 1 6 6 C 1.46503 * 119.99545 * 270.00374 * 5 4 2 7 7 C 1.36936 * 120.00317 * 90.00241 * 5 4 2 8 8 H 1.07996 * 119.99539 * 20.38356 * 7 5 4 9 9 C 1.38804 * 120.00354 * 200.38097 * 7 5 4 10 10 N 1.31629 * 120.00034 * 15.00372 * 9 7 5 11 11 Si 1.86792 * 120.00251 * 195.00568 * 9 7 5 12 12 H 1.48502 * 109.47326 * 84.99994 * 11 9 7 13 13 H 1.48505 * 109.47585 * 205.00127 * 11 9 7 14 14 H 1.48505 * 109.47305 * 325.00224 * 11 9 7 15 15 N 1.46489 * 109.47275 * 240.00124 * 2 1 3 16 16 C 1.34778 * 120.00050 * 84.99886 * 15 2 1 17 17 O 1.21637 * 120.00198 * 0.02562 * 16 15 2 18 18 C 1.47269 * 120.00212 * 180.02562 * 16 15 2 19 19 C 1.35084 * 122.43356 * 179.73873 * 18 16 15 20 20 S 1.71003 * 109.14411 * 179.86087 * 19 18 16 21 21 C 1.75998 * 90.59470 * 0.32931 * 20 19 18 22 22 C 1.47863 * 125.32223 * 179.83185 * 21 20 19 23 23 C 1.46859 * 127.14484 * 359.67505 * 22 21 20 24 24 C 1.34302 * 106.01166 * 179.86746 * 23 22 21 25 25 O 1.34172 * 109.05375 * 0.40393 * 24 23 22 26 26 C 1.34011 * 110.79842 * 359.72909 * 25 24 23 27 27 N 1.29885 * 109.35700 * 359.80377 * 21 20 19 28 28 H 1.08999 * 109.47035 * 59.99699 * 1 2 3 29 29 H 1.09001 * 109.47056 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47048 * 299.99796 * 1 2 3 31 31 H 1.08992 * 109.47401 * 295.00159 * 4 2 1 32 32 H 1.08999 * 109.46850 * 55.00377 * 4 2 1 33 33 H 1.09004 * 109.47174 * 95.13359 * 6 5 4 34 34 H 1.09002 * 109.46943 * 215.12920 * 6 5 4 35 35 H 1.09001 * 109.47360 * 335.12563 * 6 5 4 36 36 H 0.96998 * 120.00121 * 179.97438 * 10 9 7 37 37 H 0.96998 * 120.00361 * 264.99738 * 15 2 1 38 38 H 1.08000 * 125.42378 * 359.97438 * 19 18 16 39 39 H 1.08006 * 126.99115 * 0.02922 * 23 22 21 40 40 H 1.07999 * 125.46933 * 180.09637 * 24 23 22 41 41 H 1.08001 * 125.78652 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5001 -0.8262 1.1906 6 6 4.1258 -1.9918 0.5612 7 6 4.2799 0.1650 1.7240 8 1 3.8671 0.8402 2.4588 9 6 5.6009 0.3018 1.3204 10 7 6.0235 -0.3082 0.2332 11 14 6.7791 1.3516 2.3200 12 1 7.3498 0.5399 3.4248 13 1 7.8759 1.8358 1.4438 14 1 6.0481 2.5137 2.8861 15 7 2.0184 -0.6905 -1.1961 16 6 2.1471 -0.0182 -2.3571 17 8 1.8582 1.1622 -2.4116 18 6 2.6375 -0.7125 -3.5597 19 6 2.7804 -0.0881 -4.7490 20 16 3.3721 -1.2048 -5.9010 21 6 3.3833 -2.4791 -4.6871 22 6 3.8029 -3.8778 -4.9198 23 6 4.2745 -4.4640 -6.1810 24 6 4.5418 -5.7527 -5.9134 25 8 4.2692 -5.9977 -4.6227 26 6 3.8265 -4.8904 -4.0114 27 7 2.9660 -1.9988 -3.5548 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.7517 -0.1583 2.1370 32 1 1.6054 -1.7197 1.2952 33 1 4.3629 -1.7605 -0.4773 34 1 5.0417 -2.2452 1.0952 35 1 3.4386 -2.8371 0.5975 36 1 6.9465 -0.2123 -0.0491 37 1 2.2491 -1.6317 -1.1526 38 1 2.5581 0.9511 -4.9412 39 1 4.3864 -3.9604 -7.1299 40 1 4.9115 -6.4767 -6.6244 41 1 3.5371 -4.8147 -2.9736 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733057988.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:02 Heat of formation + Delta-G solvation = 50.055443 kcal Electronic energy + Delta-G solvation = -26501.042108 eV Core-core repulsion = 22703.678717 eV Total energy + Delta-G solvation = -3797.363391 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.57108 -40.10505 -38.32176 -36.26597 -33.98744 -33.56057 -31.27058 -30.77232 -30.10827 -29.11454 -26.12031 -25.85509 -25.50114 -23.59320 -21.86363 -21.58259 -20.40485 -19.97004 -19.06375 -18.67771 -17.49356 -16.76996 -16.25191 -16.17728 -15.54283 -15.20130 -14.96612 -14.77392 -14.24650 -13.87744 -13.57092 -13.36289 -13.29004 -13.16532 -13.08009 -12.78749 -12.36998 -12.13288 -11.99327 -11.79112 -11.40493 -11.04503 -10.81282 -10.74703 -10.54500 -10.48145 -10.16264 -9.95434 -9.87437 -9.79486 -9.55977 -9.51624 -9.16002 -8.55867 -8.36796 -8.17613 -6.72877 -5.67451 -3.10912 0.38812 1.20110 1.59979 1.62955 1.94126 2.79604 2.85473 3.42186 3.48258 3.49409 3.66060 3.88934 4.01177 4.55107 4.61314 4.69875 5.00142 5.26100 5.33768 5.37389 5.44108 5.52261 5.53376 5.72571 5.87095 5.90094 6.01557 6.04552 6.11382 6.15041 6.28735 6.50858 6.57645 6.70801 6.85987 6.91033 7.19579 7.38922 7.52172 7.75715 7.85807 8.20233 8.42331 8.80532 9.27327 9.90948 10.38163 11.37410 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.010558 B = 0.003863 C = 0.003466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2651.330405 B = 7246.473910 C = 8077.257759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.114 3.886 3 H 0.086 0.914 4 C 0.143 3.857 5 N -0.597 5.597 6 C 0.162 3.838 7 C -0.256 4.256 8 H 0.069 0.931 9 C 0.004 3.996 10 N -0.902 5.902 11 Si 0.902 3.098 12 H -0.288 1.288 13 H -0.293 1.293 14 H -0.280 1.280 15 N -0.676 5.676 16 C 0.593 3.407 17 O -0.548 6.548 18 C 0.033 3.967 19 C -0.222 4.222 20 S 0.161 5.839 21 C 0.130 3.870 22 C -0.134 4.134 23 C -0.198 4.198 24 C -0.031 4.031 25 O -0.176 6.176 26 C 0.040 3.960 27 N -0.433 5.433 28 H 0.051 0.949 29 H 0.050 0.950 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.042 0.958 33 H 0.035 0.965 34 H 0.041 0.959 35 H -0.006 1.006 36 H 0.250 0.750 37 H 0.404 0.596 38 H 0.189 0.811 39 H 0.155 0.845 40 H 0.207 0.793 41 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.870 -10.527 -14.318 19.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.007 3.993 3 H 0.105 0.895 4 C 0.015 3.985 5 N -0.319 5.319 6 C 0.017 3.983 7 C -0.386 4.386 8 H 0.087 0.913 9 C -0.194 4.194 10 N -0.547 5.547 11 Si 0.732 3.268 12 H -0.216 1.216 13 H -0.219 1.219 14 H -0.206 1.206 15 N -0.325 5.325 16 C 0.375 3.625 17 O -0.427 6.427 18 C -0.103 4.103 19 C -0.364 4.364 20 S 0.419 5.581 21 C -0.147 4.147 22 C -0.140 4.140 23 C -0.218 4.218 24 C -0.098 4.098 25 O -0.072 6.072 26 C -0.033 4.033 27 N -0.148 5.148 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.060 0.940 33 H 0.053 0.947 34 H 0.060 0.940 35 H 0.013 0.987 36 H 0.060 0.940 37 H 0.240 0.760 38 H 0.206 0.794 39 H 0.173 0.827 40 H 0.224 0.776 41 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -6.639 -10.176 -14.845 19.184 hybrid contribution 0.698 1.063 0.992 1.613 sum -5.941 -9.113 -13.853 17.614 Atomic orbital electron populations 1.22153 0.96745 1.01174 1.01711 1.21963 0.91790 0.99234 0.86340 0.89539 1.21188 0.85831 0.97275 0.94221 1.43929 0.99031 1.20924 1.68050 1.20849 0.94350 0.85004 0.98057 1.19180 0.92933 1.09752 1.16687 0.91315 1.24936 0.98603 0.99431 0.96471 1.70091 1.15806 1.46729 1.22068 0.86310 0.80986 0.80054 0.79404 1.21552 1.21903 1.20601 1.45606 1.64199 1.14179 1.08469 1.16992 0.77675 0.85679 0.82140 1.90756 1.52059 1.14885 1.84958 1.20266 1.05265 0.89067 0.95667 1.26409 1.06816 1.06615 0.96559 1.83570 1.59109 1.00849 1.14596 1.24733 1.02838 0.96262 0.90826 1.19027 1.10268 0.89890 0.94770 1.22747 1.06320 0.94702 0.98069 1.23864 1.04656 0.97620 0.83636 1.83930 1.64753 1.35980 1.22491 1.24431 0.97949 0.82288 0.98671 1.67000 1.12906 1.11182 1.23758 0.92976 0.93128 0.91973 0.92180 0.93954 0.94688 0.94005 0.98706 0.93959 0.76019 0.79394 0.82723 0.77628 0.76541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.49 9.48 37.16 0.35 -2.14 16 2 C 0.11 2.24 2.88 -67.93 -0.20 2.04 16 3 H 0.09 2.01 7.58 -51.93 -0.39 1.62 16 4 C 0.14 2.86 5.33 -4.04 -0.02 2.84 16 5 N -0.60 -14.74 2.78 -181.12 -0.50 -15.25 16 6 C 0.16 3.90 7.60 59.85 0.45 4.36 16 7 C -0.26 -7.08 9.68 -15.06 -0.15 -7.23 16 8 H 0.07 1.87 7.86 -52.49 -0.41 1.45 16 9 C 0.00 0.12 5.06 -17.43 -0.09 0.03 16 10 N -0.90 -26.68 10.67 55.49 0.59 -26.09 16 11 Si 0.90 22.46 29.58 -169.99 -5.03 17.43 16 12 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 13 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 14 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 15 N -0.68 -13.49 4.42 -54.93 -0.24 -13.73 16 16 C 0.59 12.44 7.76 -12.59 -0.10 12.34 16 17 O -0.55 -12.76 16.31 5.24 0.09 -12.67 16 18 C 0.03 0.60 6.64 -84.92 -0.56 0.04 16 19 C -0.22 -3.45 10.56 29.61 0.31 -3.14 16 20 S 0.16 1.96 23.07 -107.50 -2.48 -0.52 16 21 C 0.13 1.87 7.46 -14.44 -0.11 1.76 16 22 C -0.13 -1.64 6.32 -103.25 -0.65 -2.30 16 23 C -0.20 -1.84 11.04 -37.48 -0.41 -2.25 16 24 C -0.03 -0.25 12.04 29.34 0.35 0.11 16 25 O -0.18 -1.79 10.54 6.84 0.07 -1.72 16 26 C 0.04 0.45 12.05 29.95 0.36 0.81 16 27 N -0.43 -7.35 10.03 -8.11 -0.08 -7.43 16 28 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.06 1.15 8.03 -51.93 -0.42 0.74 16 32 H 0.04 0.75 7.86 -51.93 -0.41 0.34 16 33 H 0.03 0.92 6.97 -51.93 -0.36 0.55 16 34 H 0.04 1.10 7.22 -51.93 -0.37 0.73 16 35 H -0.01 -0.12 7.83 -51.93 -0.41 -0.52 16 36 H 0.25 7.28 8.31 -40.82 -0.34 6.95 16 37 H 0.40 7.78 6.66 -40.82 -0.27 7.51 16 38 H 0.19 2.71 7.99 -52.49 -0.42 2.29 16 39 H 0.16 1.11 8.06 -52.48 -0.42 0.68 16 40 H 0.21 0.76 8.06 -52.49 -0.42 0.34 16 41 H 0.22 2.18 8.06 -52.49 -0.42 1.75 16 LS Contribution 367.53 15.07 5.54 5.54 Total: -1.00 -34.11 367.53 -7.64 -41.75 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -5.14 Total: 5.42 kcal Atomic # 6 Polarization: 7.72 SS G_CDS: -0.45 Total: 7.27 kcal Atomic # 7 Polarization: -62.26 SS G_CDS: -0.24 Total: -62.49 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: 0.16 Total: -14.39 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.03 Total: 17.43 kcal Atomic # 16 Polarization: 1.96 SS G_CDS: -2.48 Total: -0.52 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.11 -7.64 -41.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733057988.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.805 kcal (2) G-P(sol) polarization free energy of solvation -34.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds