Wall clock time and date at job start Tue Mar 31 2020 19:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47056 * 2 1 4 4 C 1.53003 * 109.47003 * 119.99612 * 2 1 3 5 5 N 1.46504 * 109.46804 * 175.00259 * 4 2 1 6 6 C 1.46503 * 119.99545 * 270.00374 * 5 4 2 7 7 C 1.36936 * 120.00317 * 90.00241 * 5 4 2 8 8 H 1.07996 * 119.99539 * 20.38356 * 7 5 4 9 9 C 1.38804 * 120.00354 * 200.38097 * 7 5 4 10 10 N 1.31629 * 120.00034 * 15.00372 * 9 7 5 11 11 Si 1.86792 * 120.00251 * 195.00568 * 9 7 5 12 12 H 1.48502 * 109.47326 * 84.99994 * 11 9 7 13 13 H 1.48505 * 109.47585 * 205.00127 * 11 9 7 14 14 H 1.48505 * 109.47305 * 325.00224 * 11 9 7 15 15 N 1.46489 * 109.47275 * 240.00124 * 2 1 3 16 16 C 1.34778 * 120.00050 * 84.99886 * 15 2 1 17 17 O 1.21637 * 120.00198 * 0.02562 * 16 15 2 18 18 C 1.47269 * 120.00212 * 180.02562 * 16 15 2 19 19 C 1.35084 * 122.43356 * 179.73873 * 18 16 15 20 20 S 1.71003 * 109.14411 * 179.86087 * 19 18 16 21 21 C 1.75998 * 90.59470 * 0.32931 * 20 19 18 22 22 C 1.47863 * 125.32223 * 179.83185 * 21 20 19 23 23 C 1.46859 * 127.14484 * 359.67505 * 22 21 20 24 24 C 1.34302 * 106.01166 * 179.86746 * 23 22 21 25 25 O 1.34172 * 109.05375 * 0.40393 * 24 23 22 26 26 C 1.34011 * 110.79842 * 359.72909 * 25 24 23 27 27 N 1.29885 * 109.35700 * 359.80377 * 21 20 19 28 28 H 1.08999 * 109.47035 * 59.99699 * 1 2 3 29 29 H 1.09001 * 109.47056 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47048 * 299.99796 * 1 2 3 31 31 H 1.08992 * 109.47401 * 295.00159 * 4 2 1 32 32 H 1.08999 * 109.46850 * 55.00377 * 4 2 1 33 33 H 1.09004 * 109.47174 * 95.13359 * 6 5 4 34 34 H 1.09002 * 109.46943 * 215.12920 * 6 5 4 35 35 H 1.09001 * 109.47360 * 335.12563 * 6 5 4 36 36 H 0.96998 * 120.00121 * 179.97438 * 10 9 7 37 37 H 0.96998 * 120.00361 * 264.99738 * 15 2 1 38 38 H 1.08000 * 125.42378 * 359.97438 * 19 18 16 39 39 H 1.08006 * 126.99115 * 0.02922 * 23 22 21 40 40 H 1.07999 * 125.46933 * 180.09637 * 24 23 22 41 41 H 1.08001 * 125.78652 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5001 -0.8262 1.1906 6 6 4.1258 -1.9918 0.5612 7 6 4.2799 0.1650 1.7240 8 1 3.8671 0.8402 2.4588 9 6 5.6009 0.3018 1.3204 10 7 6.0235 -0.3082 0.2332 11 14 6.7791 1.3516 2.3200 12 1 7.3498 0.5399 3.4248 13 1 7.8759 1.8358 1.4438 14 1 6.0481 2.5137 2.8861 15 7 2.0184 -0.6905 -1.1961 16 6 2.1471 -0.0182 -2.3571 17 8 1.8582 1.1622 -2.4116 18 6 2.6375 -0.7125 -3.5597 19 6 2.7804 -0.0881 -4.7490 20 16 3.3721 -1.2048 -5.9010 21 6 3.3833 -2.4791 -4.6871 22 6 3.8029 -3.8778 -4.9198 23 6 4.2745 -4.4640 -6.1810 24 6 4.5418 -5.7527 -5.9134 25 8 4.2692 -5.9977 -4.6227 26 6 3.8265 -4.8904 -4.0114 27 7 2.9660 -1.9988 -3.5548 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.7517 -0.1583 2.1370 32 1 1.6054 -1.7197 1.2952 33 1 4.3629 -1.7605 -0.4773 34 1 5.0417 -2.2452 1.0952 35 1 3.4386 -2.8371 0.5975 36 1 6.9465 -0.2123 -0.0491 37 1 2.2491 -1.6317 -1.1526 38 1 2.5581 0.9511 -4.9412 39 1 4.3864 -3.9604 -7.1299 40 1 4.9115 -6.4767 -6.6244 41 1 3.5371 -4.8147 -2.9736 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733057988.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:01 Heat of formation + Delta-G solvation = 26.969618 kcal Electronic energy + Delta-G solvation = -26502.043185 eV Core-core repulsion = 22703.678717 eV Total energy + Delta-G solvation = -3798.364467 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.32676 -41.47583 -39.75427 -38.03058 -35.80573 -34.44710 -33.13708 -31.99682 -31.51474 -30.06208 -27.99708 -27.44147 -26.95676 -24.86190 -23.36227 -22.59222 -21.77978 -21.42598 -20.23846 -19.79830 -18.79581 -18.45281 -17.64065 -17.00633 -16.94977 -16.80074 -16.42185 -16.09443 -15.60272 -15.47472 -15.13577 -14.95909 -14.70603 -14.48288 -14.19978 -13.81532 -13.77785 -13.47247 -13.19583 -13.11348 -13.05407 -12.83116 -12.67878 -12.56428 -12.31629 -12.05139 -11.84123 -11.75007 -11.53627 -11.19826 -10.95873 -10.63524 -10.57209 -10.07144 -9.89012 -9.22227 -8.76625 -7.81797 -5.26126 -0.73252 0.13299 0.47512 0.55120 1.08902 1.43454 1.43861 1.51708 1.77120 2.12560 2.27661 2.48256 2.51283 2.84936 3.31100 3.67720 3.73173 3.87228 4.03856 4.14133 4.16519 4.22061 4.39576 4.49640 4.58381 4.75025 4.78635 4.81890 4.88239 4.88423 4.98522 5.13741 5.16502 5.34377 5.35977 5.42339 5.63789 5.65008 5.79379 6.09869 6.31469 6.32871 6.67316 7.16310 7.23372 7.89328 8.30088 9.20540 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.010558 B = 0.003863 C = 0.003466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2651.330405 B = 7246.473910 C = 8077.257759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.118 3.882 3 H 0.041 0.959 4 C 0.142 3.858 5 N -0.611 5.611 6 C 0.179 3.821 7 C -0.261 4.261 8 H 0.071 0.929 9 C -0.051 4.051 10 N -0.931 5.931 11 Si 0.961 3.039 12 H -0.282 1.282 13 H -0.301 1.301 14 H -0.273 1.273 15 N -0.674 5.674 16 C 0.582 3.418 17 O -0.585 6.585 18 C 0.001 3.999 19 C -0.238 4.238 20 S 0.255 5.745 21 C 0.116 3.884 22 C -0.162 4.162 23 C -0.209 4.209 24 C -0.017 4.017 25 O -0.182 6.182 26 C 0.033 3.967 27 N -0.459 5.459 28 H 0.039 0.961 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.009 0.991 34 H 0.011 0.989 35 H 0.033 0.967 36 H 0.242 0.758 37 H 0.407 0.593 38 H 0.193 0.807 39 H 0.177 0.823 40 H 0.251 0.749 41 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.308 -12.156 -15.405 20.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.011 3.989 3 H 0.060 0.940 4 C 0.015 3.985 5 N -0.333 5.333 6 C 0.034 3.966 7 C -0.391 4.391 8 H 0.089 0.911 9 C -0.247 4.247 10 N -0.577 5.577 11 Si 0.790 3.210 12 H -0.209 1.209 13 H -0.228 1.228 14 H -0.198 1.198 15 N -0.322 5.322 16 C 0.366 3.634 17 O -0.467 6.467 18 C -0.135 4.135 19 C -0.381 4.381 20 S 0.515 5.485 21 C -0.160 4.160 22 C -0.167 4.167 23 C -0.229 4.229 24 C -0.082 4.082 25 O -0.077 6.077 26 C -0.041 4.041 27 N -0.175 5.175 28 H 0.059 0.941 29 H 0.092 0.908 30 H 0.101 0.899 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.027 0.973 34 H 0.029 0.971 35 H 0.051 0.949 36 H 0.051 0.949 37 H 0.243 0.757 38 H 0.210 0.790 39 H 0.194 0.806 40 H 0.267 0.733 41 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -7.110 -11.830 -15.921 21.071 hybrid contribution 0.816 1.482 1.234 2.093 sum -6.295 -10.348 -14.688 19.038 Atomic orbital electron populations 1.22020 0.93306 1.02849 1.02180 1.21834 0.94379 0.96590 0.86141 0.94028 1.21388 0.83229 0.99282 0.94560 1.44135 1.00920 1.20452 1.67832 1.20562 0.94061 0.86080 0.95867 1.19518 0.93468 1.09816 1.16297 0.91145 1.25644 1.00219 1.01230 0.97566 1.70270 1.15390 1.48524 1.23563 0.85373 0.78795 0.78861 0.77962 1.20876 1.22804 1.19772 1.45637 1.63925 1.14217 1.08422 1.17478 0.77167 0.85512 0.83200 1.90708 1.53858 1.16345 1.85755 1.20021 1.07843 0.90161 0.95445 1.26698 1.06372 1.07768 0.97230 1.83123 1.56532 0.97557 1.11285 1.25206 1.01798 0.97819 0.91137 1.19298 1.11594 0.89113 0.96682 1.23034 1.06806 0.95272 0.97828 1.24746 1.02445 0.98071 0.82955 1.83951 1.64581 1.35514 1.23673 1.24542 0.97960 0.82624 0.98977 1.66947 1.14417 1.10678 1.25475 0.94148 0.90759 0.89860 0.91146 0.90731 0.97321 0.97053 0.94876 0.94862 0.75656 0.79017 0.80611 0.73308 0.76463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.37 9.48 71.98 0.68 -3.69 16 2 C 0.12 4.65 2.88 45.00 0.13 4.78 16 3 H 0.04 2.01 7.58 -2.39 -0.02 2.00 16 4 C 0.14 5.52 5.33 86.38 0.46 5.98 16 5 N -0.61 -30.24 2.78 -726.93 -2.02 -32.26 16 6 C 0.18 8.72 7.60 127.77 0.97 9.69 16 7 C -0.26 -14.56 9.68 84.03 0.81 -13.75 16 8 H 0.07 3.83 7.86 -2.91 -0.02 3.81 16 9 C -0.05 -2.97 5.06 84.86 0.43 -2.54 16 10 N -0.93 -56.74 10.67 21.65 0.23 -56.51 16 11 Si 0.96 46.97 29.58 68.60 2.03 49.00 16 12 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 13 H -0.30 -15.02 7.11 99.48 0.71 -14.31 16 14 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 15 N -0.67 -27.57 4.42 -445.94 -1.97 -29.54 16 16 C 0.58 25.53 7.76 86.62 0.67 26.20 16 17 O -0.58 -28.68 16.31 -4.15 -0.07 -28.75 16 18 C 0.00 0.04 6.64 40.65 0.27 0.31 16 19 C -0.24 -7.47 10.56 67.09 0.71 -6.76 16 20 S 0.26 5.85 23.07 -56.49 -1.30 4.55 16 21 C 0.12 3.29 7.46 87.53 0.65 3.95 16 22 C -0.16 -3.79 6.32 -18.98 -0.12 -3.91 16 23 C -0.21 -3.34 11.04 23.63 0.26 -3.08 16 24 C -0.02 -0.21 12.04 66.92 0.81 0.60 16 25 O -0.18 -3.36 10.54 1.57 0.02 -3.34 16 26 C 0.03 0.72 12.05 67.31 0.81 1.53 16 27 N -0.46 -15.92 10.03 -179.57 -1.80 -17.72 16 28 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.07 2.59 8.03 -2.39 -0.02 2.58 16 32 H 0.07 2.44 7.86 -2.39 -0.02 2.42 16 33 H 0.01 0.46 6.97 -2.38 -0.02 0.45 16 34 H 0.01 0.58 7.22 -2.39 -0.02 0.57 16 35 H 0.03 1.32 7.83 -2.39 -0.02 1.30 16 36 H 0.24 14.59 8.31 -92.71 -0.77 13.82 16 37 H 0.41 15.94 6.66 -92.71 -0.62 15.32 16 38 H 0.19 5.67 7.99 -2.91 -0.02 5.64 16 39 H 0.18 1.91 8.06 -2.91 -0.02 1.88 16 40 H 0.25 0.66 8.06 -2.91 -0.02 0.63 16 41 H 0.22 4.47 8.06 -2.91 -0.02 4.44 16 Total: -1.00 -77.30 367.53 3.11 -74.19 By element: Atomic # 1 Polarization: 20.61 SS G_CDS: 0.45 Total: 21.06 kcal Atomic # 6 Polarization: 11.77 SS G_CDS: 7.55 Total: 19.32 kcal Atomic # 7 Polarization: -130.47 SS G_CDS: -5.56 Total: -136.03 kcal Atomic # 8 Polarization: -32.04 SS G_CDS: -0.05 Total: -32.09 kcal Atomic # 14 Polarization: 46.97 SS G_CDS: 2.03 Total: 49.00 kcal Atomic # 16 Polarization: 5.85 SS G_CDS: -1.30 Total: 4.55 kcal Total: -77.30 3.11 -74.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733057988.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.161 kcal (2) G-P(sol) polarization free energy of solvation -77.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds