Wall clock time and date at job start Tue Mar 31 2020 18:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47160 * 270.59612 * 3 2 1 5 5 C 1.34773 * 119.99928 * 276.64819 * 4 3 2 6 6 O 1.21646 * 119.99826 * 185.58468 * 5 4 3 7 7 C 1.47183 * 120.00086 * 5.57593 * 5 4 3 8 8 C 1.35093 * 122.48261 * 175.47978 * 7 5 4 9 9 S 1.76189 * 108.21489 * 179.87937 * 8 7 5 10 10 C 1.76059 * 90.15867 * 0.31754 * 9 8 7 11 11 O 1.35492 * 125.17779 * 179.83503 * 10 9 8 12 12 N 1.29248 * 109.63854 * 359.81298 * 10 9 8 13 13 C 1.46500 * 119.99734 * 96.64793 * 4 3 2 14 14 C 1.53071 * 109.45476 * 119.78785 * 13 4 3 15 15 C 1.53186 * 109.29834 * 181.23744 * 14 13 4 16 16 N 1.46923 * 108.89614 * 305.58332 * 15 14 13 17 17 C 1.36936 * 120.62872 * 233.51361 * 16 15 14 18 18 H 1.08005 * 119.99953 * 144.52734 * 17 16 15 19 19 C 1.38811 * 120.00181 * 324.52588 * 17 16 15 20 20 N 1.31622 * 119.99985 * 3.95064 * 19 17 16 21 21 Si 1.86806 * 120.00101 * 183.95683 * 19 17 16 22 22 H 1.48506 * 109.47024 * 89.99877 * 21 19 17 23 23 H 1.48495 * 109.46728 * 209.99735 * 21 19 17 24 24 H 1.48493 * 109.46859 * 329.99707 * 21 19 17 25 25 C 1.46928 * 118.74132 * 53.53180 * 16 15 14 26 26 C 1.53043 * 109.45843 * 240.00026 * 13 4 3 27 27 H 4.40646 * 5.51454 * 179.97438 * 4 1 2 28 28 H 1.08994 * 109.46920 * 150.59602 * 3 2 1 29 29 H 1.08998 * 109.47143 * 30.59572 * 3 2 1 30 30 H 1.07997 * 125.89218 * 359.95945 * 8 7 5 31 31 H 0.96695 * 114.00107 * 269.97392 * 11 10 9 32 32 H 1.09001 * 109.46302 * 359.97114 * 13 4 3 33 33 H 1.09008 * 109.39028 * 61.36131 * 14 13 4 34 34 H 1.08996 * 109.62100 * 301.25892 * 14 13 4 35 35 H 1.08997 * 109.58878 * 185.71598 * 15 14 13 36 36 H 1.09011 * 109.58426 * 65.43768 * 15 14 13 37 37 H 0.96996 * 120.00332 * 180.02562 * 20 19 17 38 38 H 1.08994 * 109.58266 * 66.17763 * 25 16 15 39 39 H 1.09000 * 109.58802 * 186.46347 * 25 16 15 40 40 H 1.08999 * 109.50076 * 58.66035 * 26 13 4 41 41 H 1.09010 * 109.49581 * 298.56561 * 26 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1344 -0.0135 1.3812 5 6 3.2311 1.1387 2.0735 6 8 3.7309 1.1418 3.1826 7 6 2.7322 2.3934 1.4877 8 6 2.7220 3.5592 2.1704 9 16 2.0566 4.8070 1.1194 10 6 1.8409 3.6194 -0.1623 11 8 1.3245 3.8786 -1.3878 12 7 2.2507 2.4628 0.2438 13 6 3.5176 -1.2802 2.0096 14 6 4.9916 -1.2212 2.4181 15 6 5.3966 -2.5582 3.0466 16 7 4.4742 -2.8649 4.1483 17 6 4.9520 -3.1504 5.3994 18 1 4.4056 -2.8268 6.2730 19 6 6.1388 -3.8556 5.5449 20 7 6.8446 -4.1823 4.4830 21 14 6.7340 -4.3412 7.2477 22 1 6.1870 -5.6758 7.6013 23 1 8.2179 -4.3963 7.2562 24 1 6.2702 -3.3375 8.2389 25 6 3.0292 -2.8599 3.8820 26 6 2.6495 -1.5184 3.2473 27 1 -1.0500 0.0002 0.0000 28 1 3.0089 0.8961 -0.5045 29 1 3.0097 -0.8837 -0.5230 30 1 3.0641 3.7019 3.1848 31 1 0.3648 3.7733 -1.4405 32 1 3.3717 -2.0957 1.3013 33 1 5.1344 -0.4201 3.1434 34 1 5.6076 -1.0309 1.5392 35 1 6.4142 -2.4880 3.4308 36 1 5.3433 -3.3462 2.2953 37 1 7.6736 -4.6754 4.5846 38 1 2.7811 -3.6711 3.1976 39 1 2.4848 -2.9913 4.8171 40 1 1.5991 -1.5377 2.9567 41 1 2.8137 -0.7161 3.9668 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733372954.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:23 Heat of formation + Delta-G solvation = 82.008318 kcal Electronic energy + Delta-G solvation = -26988.522643 eV Core-core repulsion = 23192.544833 eV Total energy + Delta-G solvation = -3795.977810 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -40.87064 -39.33226 -37.66530 -36.78210 -35.67793 -33.10566 -31.99232 -30.39687 -29.96244 -29.48451 -26.86898 -26.18954 -24.59350 -22.84957 -22.01523 -21.42191 -19.98180 -19.67618 -18.87499 -18.27384 -17.68055 -16.70589 -16.60878 -16.08182 -15.32044 -15.31554 -14.67647 -14.64851 -14.09652 -13.92543 -13.67293 -13.48756 -13.38212 -13.10761 -12.91951 -12.49413 -12.30933 -12.21333 -12.02834 -11.45973 -11.14557 -10.83705 -10.70807 -10.50751 -10.36895 -10.26722 -10.05994 -10.00129 -9.89283 -9.83707 -9.69643 -9.41592 -9.32089 -9.15978 -8.48458 -8.29486 -6.45878 -5.70459 -3.22512 0.10158 0.62109 1.13682 1.68288 2.58407 2.96036 3.03839 3.30957 3.43009 3.48945 3.51023 3.54052 4.37644 4.49243 4.55368 4.83904 4.92101 5.27690 5.31227 5.47619 5.49900 5.67075 5.70449 5.84555 5.91463 5.99192 6.19792 6.39378 6.42862 6.62745 6.65618 6.67675 6.82667 6.91758 7.01527 7.11159 7.13320 7.46992 7.63859 7.70329 7.87171 7.90655 8.27716 8.62295 9.33378 9.92375 10.52206 11.35895 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.021706 B = 0.003044 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.678127 B = 9196.422213 C = 9835.728119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.163 4.163 3 C 0.210 3.790 4 N -0.590 5.590 5 C 0.589 3.411 6 O -0.506 6.506 7 C 0.029 3.971 8 C -0.164 4.164 9 S 0.092 5.908 10 C 0.253 3.747 11 O -0.431 6.431 12 N -0.448 5.448 13 C 0.159 3.841 14 C -0.157 4.157 15 C 0.172 3.828 16 N -0.592 5.592 17 C -0.248 4.248 18 H 0.063 0.937 19 C 0.007 3.993 20 N -0.906 5.906 21 Si 0.903 3.097 22 H -0.287 1.287 23 H -0.291 1.291 24 H -0.279 1.279 25 C 0.152 3.848 26 C -0.145 4.145 27 H 0.210 0.790 28 H 0.126 0.874 29 H 0.095 0.905 30 H 0.196 0.804 31 H 0.407 0.593 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.045 0.955 35 H 0.102 0.898 36 H 0.013 0.987 37 H 0.253 0.747 38 H 0.016 0.984 39 H 0.055 0.945 40 H 0.045 0.955 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.300 17.010 -12.897 25.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.164 4.164 3 C 0.088 3.912 4 N -0.321 5.321 5 C 0.373 3.627 6 O -0.381 6.381 7 C -0.103 4.103 8 C -0.305 4.305 9 S 0.340 5.660 10 C -0.067 4.067 11 O -0.238 6.238 12 N -0.175 5.175 13 C 0.058 3.942 14 C -0.197 4.197 15 C 0.046 3.954 16 N -0.314 5.314 17 C -0.378 4.378 18 H 0.080 0.920 19 C -0.191 4.191 20 N -0.551 5.551 21 Si 0.733 3.267 22 H -0.214 1.214 23 H -0.217 1.217 24 H -0.204 1.204 25 C 0.024 3.976 26 C -0.185 4.185 27 H 0.227 0.773 28 H 0.144 0.856 29 H 0.113 0.887 30 H 0.213 0.787 31 H 0.266 0.734 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.064 0.936 35 H 0.120 0.880 36 H 0.031 0.969 37 H 0.064 0.936 38 H 0.034 0.966 39 H 0.073 0.927 40 H 0.064 0.936 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -12.520 17.658 -12.777 25.136 hybrid contribution -0.316 -1.035 0.969 1.453 sum -12.836 16.623 -11.808 24.094 Atomic orbital electron populations 1.24712 0.95724 1.03660 0.99989 1.23474 0.94709 0.97975 1.00255 1.18912 0.83978 1.04808 0.83519 1.48160 1.63271 1.07309 1.13320 1.17088 0.79036 0.81757 0.84847 1.90871 1.43106 1.85228 1.18924 1.20226 1.04830 0.96144 0.89069 1.27137 1.04798 0.93359 1.05176 1.85315 1.59130 1.14657 1.06947 1.25259 1.02036 0.89351 0.90047 1.84848 1.28376 1.87812 1.22717 1.67192 1.13755 1.22671 1.13883 1.21298 0.96488 0.82067 0.94393 1.22741 0.92630 1.03797 1.00523 1.20927 0.96995 0.88876 0.88630 1.43983 0.99149 1.80601 1.07708 1.19161 1.06617 1.28018 0.84029 0.91974 1.25304 0.99048 0.97723 0.97006 1.69888 1.15523 1.42262 1.27401 0.86273 0.77551 0.78689 0.84187 1.21376 1.21712 1.20447 1.20848 0.87060 0.92235 0.97414 1.22421 0.96802 1.01754 0.97519 0.77278 0.85647 0.88712 0.78713 0.73392 0.90244 0.90052 0.93624 0.88015 0.96917 0.93614 0.96627 0.92660 0.93620 0.90465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.50 19.25 29.55 0.57 -1.93 16 2 C -0.16 -2.08 11.95 -37.12 -0.44 -2.52 16 3 C 0.21 2.72 5.53 -6.83 -0.04 2.68 16 4 N -0.59 -9.35 2.40 -170.70 -0.41 -9.76 16 5 C 0.59 9.78 6.99 -12.63 -0.09 9.69 16 6 O -0.51 -10.04 12.95 5.24 0.07 -9.98 16 7 C 0.03 0.38 6.41 -84.60 -0.54 -0.16 16 8 C -0.16 -1.80 10.84 29.61 0.32 -1.48 16 9 S 0.09 0.75 23.42 -107.50 -2.52 -1.77 16 10 C 0.25 2.34 8.88 51.68 0.46 2.80 16 11 O -0.43 -2.95 13.64 -18.17 -0.25 -3.20 16 12 N -0.45 -5.24 5.50 -11.34 -0.06 -5.30 16 13 C 0.16 2.89 2.50 -67.87 -0.17 2.72 16 14 C -0.16 -3.28 5.28 -26.60 -0.14 -3.43 16 15 C 0.17 4.28 5.25 -3.72 -0.02 4.26 16 16 N -0.59 -15.49 3.00 -172.32 -0.52 -16.00 16 17 C -0.25 -7.07 9.55 -15.06 -0.14 -7.22 16 18 H 0.06 1.76 7.83 -52.48 -0.41 1.34 16 19 C 0.01 0.21 5.31 -17.43 -0.09 0.12 16 20 N -0.91 -26.60 10.63 55.49 0.59 -26.01 16 21 Si 0.90 22.22 29.56 -169.99 -5.02 17.19 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 25 C 0.15 3.36 6.52 -3.71 -0.02 3.33 16 26 C -0.14 -2.83 5.27 -26.61 -0.14 -2.97 16 27 H 0.21 1.65 7.80 -54.09 -0.42 1.23 16 28 H 0.13 1.56 5.59 -51.93 -0.29 1.27 16 29 H 0.09 1.09 7.78 -51.93 -0.40 0.68 16 30 H 0.20 1.98 8.01 -52.49 -0.42 1.56 16 31 H 0.41 0.76 9.06 45.56 0.41 1.17 16 32 H 0.08 1.38 7.71 -51.93 -0.40 0.98 16 33 H 0.08 1.90 6.03 -51.92 -0.31 1.59 16 34 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.10 2.86 5.93 -51.93 -0.31 2.55 16 36 H 0.01 0.32 8.14 -51.92 -0.42 -0.10 16 37 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 38 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.05 1.20 7.93 -51.93 -0.41 0.79 16 40 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.08 1.69 6.40 -51.92 -0.33 1.36 16 LS Contribution 352.92 15.07 5.32 5.32 Total: -1.00 -33.91 352.92 -7.42 -41.33 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -4.13 Total: 2.29 kcal Atomic # 6 Polarization: 6.38 SS G_CDS: -0.49 Total: 5.89 kcal Atomic # 7 Polarization: -56.67 SS G_CDS: -0.40 Total: -57.07 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: -0.18 Total: -13.18 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.19 kcal Atomic # 16 Polarization: 0.75 SS G_CDS: -2.52 Total: -1.77 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.91 -7.42 -41.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733372954.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.341 kcal (2) G-P(sol) polarization free energy of solvation -33.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds