Wall clock time and date at job start Tue Mar 31 2020 18:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47160 * 270.59612 * 3 2 1 5 5 C 1.34773 * 119.99928 * 276.64819 * 4 3 2 6 6 O 1.21646 * 119.99826 * 185.58468 * 5 4 3 7 7 C 1.47183 * 120.00086 * 5.57593 * 5 4 3 8 8 C 1.35093 * 122.48261 * 175.47978 * 7 5 4 9 9 S 1.76189 * 108.21489 * 179.87937 * 8 7 5 10 10 C 1.76059 * 90.15867 * 0.31754 * 9 8 7 11 11 O 1.35492 * 125.17779 * 179.83503 * 10 9 8 12 12 N 1.29248 * 109.63854 * 359.81298 * 10 9 8 13 13 C 1.46500 * 119.99734 * 96.64793 * 4 3 2 14 14 C 1.53071 * 109.45476 * 119.78785 * 13 4 3 15 15 C 1.53186 * 109.29834 * 181.23744 * 14 13 4 16 16 N 1.46923 * 108.89614 * 305.58332 * 15 14 13 17 17 C 1.36936 * 120.62872 * 233.51361 * 16 15 14 18 18 H 1.08005 * 119.99953 * 144.52734 * 17 16 15 19 19 C 1.38811 * 120.00181 * 324.52588 * 17 16 15 20 20 N 1.31622 * 119.99985 * 3.95064 * 19 17 16 21 21 Si 1.86806 * 120.00101 * 183.95683 * 19 17 16 22 22 H 1.48506 * 109.47024 * 89.99877 * 21 19 17 23 23 H 1.48495 * 109.46728 * 209.99735 * 21 19 17 24 24 H 1.48493 * 109.46859 * 329.99707 * 21 19 17 25 25 C 1.46928 * 118.74132 * 53.53180 * 16 15 14 26 26 C 1.53043 * 109.45843 * 240.00026 * 13 4 3 27 27 H 4.40646 * 5.51454 * 179.97438 * 4 1 2 28 28 H 1.08994 * 109.46920 * 150.59602 * 3 2 1 29 29 H 1.08998 * 109.47143 * 30.59572 * 3 2 1 30 30 H 1.07997 * 125.89218 * 359.95945 * 8 7 5 31 31 H 0.96695 * 114.00107 * 269.97392 * 11 10 9 32 32 H 1.09001 * 109.46302 * 359.97114 * 13 4 3 33 33 H 1.09008 * 109.39028 * 61.36131 * 14 13 4 34 34 H 1.08996 * 109.62100 * 301.25892 * 14 13 4 35 35 H 1.08997 * 109.58878 * 185.71598 * 15 14 13 36 36 H 1.09011 * 109.58426 * 65.43768 * 15 14 13 37 37 H 0.96996 * 120.00332 * 180.02562 * 20 19 17 38 38 H 1.08994 * 109.58266 * 66.17763 * 25 16 15 39 39 H 1.09000 * 109.58802 * 186.46347 * 25 16 15 40 40 H 1.08999 * 109.50076 * 58.66035 * 26 13 4 41 41 H 1.09010 * 109.49581 * 298.56561 * 26 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1344 -0.0135 1.3812 5 6 3.2311 1.1387 2.0735 6 8 3.7309 1.1418 3.1826 7 6 2.7322 2.3934 1.4877 8 6 2.7220 3.5592 2.1704 9 16 2.0566 4.8070 1.1194 10 6 1.8409 3.6194 -0.1623 11 8 1.3245 3.8786 -1.3878 12 7 2.2507 2.4628 0.2438 13 6 3.5176 -1.2802 2.0096 14 6 4.9916 -1.2212 2.4181 15 6 5.3966 -2.5582 3.0466 16 7 4.4742 -2.8649 4.1483 17 6 4.9520 -3.1504 5.3994 18 1 4.4056 -2.8268 6.2730 19 6 6.1388 -3.8556 5.5449 20 7 6.8446 -4.1823 4.4830 21 14 6.7340 -4.3412 7.2477 22 1 6.1870 -5.6758 7.6013 23 1 8.2179 -4.3963 7.2562 24 1 6.2702 -3.3375 8.2389 25 6 3.0292 -2.8599 3.8820 26 6 2.6495 -1.5184 3.2473 27 1 -1.0500 0.0002 0.0000 28 1 3.0089 0.8961 -0.5045 29 1 3.0097 -0.8837 -0.5230 30 1 3.0641 3.7019 3.1848 31 1 0.3648 3.7733 -1.4405 32 1 3.3717 -2.0957 1.3013 33 1 5.1344 -0.4201 3.1434 34 1 5.6076 -1.0309 1.5392 35 1 6.4142 -2.4880 3.4308 36 1 5.3433 -3.3462 2.2953 37 1 7.6736 -4.6754 4.5846 38 1 2.7811 -3.6711 3.1976 39 1 2.4848 -2.9913 4.8171 40 1 1.5991 -1.5377 2.9567 41 1 2.8137 -0.7161 3.9668 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733372954.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:23 Heat of formation + Delta-G solvation = 58.040268 kcal Electronic energy + Delta-G solvation = -26989.561975 eV Core-core repulsion = 23192.544833 eV Total energy + Delta-G solvation = -3797.017143 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.94200 -40.34489 -38.78820 -37.96690 -37.03521 -34.72887 -33.37215 -31.90196 -31.40453 -30.97594 -27.99814 -27.55311 -26.06820 -24.19016 -23.81170 -22.69727 -21.36664 -20.66513 -19.94367 -19.18967 -18.92795 -18.33416 -17.67547 -16.96656 -16.90064 -16.55385 -16.24897 -15.52712 -15.49254 -15.31618 -15.14578 -14.82915 -14.76377 -14.44535 -14.29360 -14.05043 -13.89961 -13.26244 -13.08107 -12.89468 -12.79618 -12.73238 -12.63187 -12.22625 -11.98291 -11.85843 -11.52743 -11.51094 -11.36206 -11.09625 -10.84870 -10.60966 -10.51761 -10.40216 -9.97651 -9.71455 -8.54852 -7.85716 -5.41738 -0.67067 -0.08011 0.34860 0.76617 1.46177 1.47027 1.54837 1.56660 2.06020 2.21758 2.24652 2.50223 2.58391 3.28842 3.48412 3.65651 3.70892 3.88461 4.08745 4.09603 4.11557 4.25773 4.38383 4.51873 4.52613 4.68637 4.82930 4.87230 4.91636 4.98030 5.06898 5.16069 5.19898 5.39114 5.56414 5.61620 5.67253 5.83620 6.14919 6.31175 6.41769 6.47196 6.83126 7.05210 7.18650 7.85869 8.40025 9.18214 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.021706 B = 0.003044 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.678127 B = 9196.422213 C = 9835.728119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.198 4.198 3 C 0.212 3.788 4 N -0.588 5.588 5 C 0.583 3.417 6 O -0.552 6.552 7 C 0.009 3.991 8 C -0.174 4.174 9 S 0.166 5.834 10 C 0.256 3.744 11 O -0.431 6.431 12 N -0.467 5.467 13 C 0.167 3.833 14 C -0.141 4.141 15 C 0.181 3.819 16 N -0.612 5.612 17 C -0.267 4.267 18 H 0.058 0.942 19 C -0.043 4.043 20 N -0.931 5.931 21 Si 0.970 3.030 22 H -0.281 1.281 23 H -0.290 1.290 24 H -0.273 1.273 25 C 0.150 3.850 26 C -0.128 4.128 27 H 0.240 0.760 28 H 0.131 0.869 29 H 0.107 0.893 30 H 0.195 0.805 31 H 0.431 0.569 32 H 0.095 0.905 33 H 0.054 0.946 34 H 0.060 0.940 35 H 0.065 0.935 36 H 0.003 0.997 37 H 0.251 0.749 38 H 0.026 0.974 39 H 0.053 0.947 40 H 0.068 0.932 41 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.444 18.539 -14.262 28.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.200 4.200 3 C 0.091 3.909 4 N -0.318 5.318 5 C 0.369 3.631 6 O -0.430 6.430 7 C -0.123 4.123 8 C -0.316 4.316 9 S 0.415 5.585 10 C -0.064 4.064 11 O -0.242 6.242 12 N -0.194 5.194 13 C 0.065 3.935 14 C -0.181 4.181 15 C 0.055 3.945 16 N -0.335 5.335 17 C -0.398 4.398 18 H 0.075 0.925 19 C -0.239 4.239 20 N -0.577 5.577 21 Si 0.798 3.202 22 H -0.207 1.207 23 H -0.217 1.217 24 H -0.198 1.198 25 C 0.024 3.976 26 C -0.168 4.168 27 H 0.257 0.743 28 H 0.148 0.852 29 H 0.125 0.875 30 H 0.212 0.788 31 H 0.294 0.706 32 H 0.113 0.887 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.021 0.979 37 H 0.061 0.939 38 H 0.043 0.957 39 H 0.071 0.929 40 H 0.086 0.914 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -14.729 19.216 -14.195 28.066 hybrid contribution 0.242 -1.364 1.303 1.902 sum -14.486 17.852 -12.892 26.358 Atomic orbital electron populations 1.25464 0.96487 1.02098 0.98044 1.23519 0.95005 0.99483 1.01964 1.19015 0.84681 1.05687 0.81563 1.48072 1.63135 1.06171 1.14430 1.17582 0.78188 0.82939 0.84355 1.90843 1.45162 1.86112 1.20905 1.19723 1.07055 0.95152 0.90345 1.27334 1.04222 0.94241 1.05820 1.85097 1.57084 1.11850 1.04513 1.25372 1.01027 0.89283 0.90678 1.84821 1.30493 1.87486 1.21370 1.67093 1.14854 1.24181 1.13261 1.20991 0.94088 0.84007 0.94418 1.22450 0.95281 1.00310 1.00064 1.20653 0.95227 0.90508 0.88139 1.44220 1.00900 1.81124 1.07277 1.19420 1.07069 1.28247 0.85016 0.92473 1.26039 0.99248 0.97875 1.00714 1.70073 1.15659 1.42724 1.29219 0.85239 0.76764 0.78387 0.79855 1.20710 1.21663 1.19822 1.20956 0.84853 0.93954 0.97846 1.22184 0.98238 0.99081 0.97328 0.74343 0.85179 0.87514 0.78771 0.70649 0.88702 0.92708 0.92103 0.91725 0.97876 0.93924 0.95654 0.92869 0.91377 0.93036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.94 19.25 74.32 1.43 -2.51 16 2 C -0.20 -4.63 11.95 31.13 0.37 -4.26 16 3 C 0.21 5.18 5.53 84.57 0.47 5.65 16 4 N -0.59 -18.44 2.40 -812.22 -1.95 -20.39 16 5 C 0.58 19.62 6.99 86.59 0.60 20.23 16 6 O -0.55 -22.86 12.95 -4.18 -0.05 -22.91 16 7 C 0.01 0.22 6.41 40.51 0.26 0.48 16 8 C -0.17 -3.66 10.84 67.10 0.73 -2.94 16 9 S 0.17 2.22 23.42 -56.49 -1.32 0.90 16 10 C 0.26 4.03 8.88 130.62 1.16 5.19 16 11 O -0.43 -4.44 13.64 -87.93 -1.20 -5.64 16 12 N -0.47 -10.09 5.50 -304.24 -1.67 -11.76 16 13 C 0.17 6.09 2.50 45.03 0.11 6.20 16 14 C -0.14 -6.09 5.28 30.68 0.16 -5.93 16 15 C 0.18 9.36 5.25 86.36 0.45 9.81 16 16 N -0.61 -33.01 3.00 -699.10 -2.10 -35.11 16 17 C -0.27 -15.67 9.55 84.03 0.80 -14.87 16 18 H 0.06 3.33 7.83 -2.91 -0.02 3.30 16 19 C -0.04 -2.52 5.31 84.86 0.45 -2.06 16 20 N -0.93 -56.32 10.63 21.65 0.23 -56.09 16 21 Si 0.97 46.60 29.56 68.60 2.03 48.63 16 22 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 23 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 24 H -0.27 -12.73 7.11 99.48 0.71 -12.03 16 25 C 0.15 6.72 6.52 86.36 0.56 7.28 16 26 C -0.13 -5.03 5.27 30.67 0.16 -4.87 16 27 H 0.24 2.79 7.80 -4.42 -0.03 2.76 16 28 H 0.13 3.08 5.59 -2.39 -0.01 3.07 16 29 H 0.11 2.27 7.78 -2.39 -0.02 2.26 16 30 H 0.20 3.96 8.01 -2.91 -0.02 3.93 16 31 H 0.43 -0.05 9.06 -74.06 -0.67 -0.72 16 32 H 0.09 3.18 7.71 -2.39 -0.02 3.16 16 33 H 0.05 2.69 6.03 -2.38 -0.01 2.67 16 34 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 35 H 0.06 3.82 5.93 -2.39 -0.01 3.80 16 36 H 0.00 0.17 8.14 -2.38 -0.02 0.15 16 37 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 38 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.05 2.35 7.93 -2.39 -0.02 2.33 16 40 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 41 H 0.05 2.31 6.40 -2.38 -0.02 2.30 16 Total: -1.00 -75.99 352.92 2.09 -73.90 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: 0.41 Total: 11.07 kcal Atomic # 6 Polarization: 9.68 SS G_CDS: 7.73 Total: 17.40 kcal Atomic # 7 Polarization: -117.86 SS G_CDS: -5.49 Total: -123.35 kcal Atomic # 8 Polarization: -27.30 SS G_CDS: -1.25 Total: -28.55 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.63 kcal Atomic # 16 Polarization: 2.22 SS G_CDS: -1.32 Total: 0.90 kcal Total: -75.99 2.09 -73.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733372954.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.938 kcal (2) G-P(sol) polarization free energy of solvation -75.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds