Wall clock time and date at job start Tue Mar 31 2020 18:27:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47537 * 2 1 4 4 H 1.09003 * 109.47022 * 55.00041 * 3 2 1 5 5 C 1.52998 * 109.47443 * 175.00128 * 3 2 1 6 6 N 1.46500 * 109.47304 * 174.99839 * 5 3 2 7 7 C 1.34776 * 119.99630 * 179.97438 * 6 5 3 8 8 O 1.21489 * 120.00428 * 0.02562 * 7 6 5 9 9 C 1.48347 * 119.99387 * 179.97438 * 7 6 5 10 10 C 1.41706 * 126.81020 * 179.71158 * 9 7 6 11 11 C 1.37157 * 103.79913 * 179.86203 * 10 9 7 12 12 C 1.47023 * 126.86049 * 180.09682 * 11 10 9 13 13 C 1.36199 * 125.33553 * 180.02562 * 12 11 10 14 14 C 1.37723 * 114.44184 * 179.78793 * 13 12 11 15 15 C 1.33733 * 115.19096 * 0.50013 * 14 13 12 16 16 S 1.75827 * 109.96174 * 359.72606 * 15 14 13 17 17 O 1.34572 * 106.28341 * 0.39936 * 11 10 9 18 18 N 1.20878 * 111.68965 * 359.72934 * 17 11 10 19 19 N 1.46498 * 109.47120 * 295.00185 * 3 2 1 20 20 C 1.36935 * 120.00239 * 84.99640 * 19 3 2 21 21 H 1.08004 * 120.00069 * 0.02562 * 20 19 3 22 22 C 1.38811 * 120.00368 * 180.02562 * 20 19 3 23 23 N 1.31624 * 119.99540 * 359.72375 * 22 20 19 24 24 Si 1.86800 * 120.00451 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47364 * 179.72253 * 24 22 20 26 26 H 1.48508 * 109.46883 * 299.72375 * 24 22 20 27 27 H 1.48497 * 109.46870 * 59.72186 * 24 22 20 28 28 H 1.09004 * 109.47282 * 59.99917 * 1 2 3 29 29 H 1.08994 * 109.47622 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.46688 * 300.00429 * 1 2 3 31 31 H 1.08995 * 109.47015 * 239.99503 * 2 1 3 32 32 H 1.08998 * 109.46879 * 119.99905 * 2 1 3 33 33 H 1.09008 * 109.46958 * 295.00113 * 5 3 2 34 34 H 1.08993 * 109.47007 * 54.99576 * 5 3 2 35 35 H 0.96999 * 119.99793 * 0.02562 * 6 5 3 36 36 H 1.08002 * 128.09831 * 359.97438 * 10 9 7 37 37 H 1.07997 * 122.78171 * 359.97153 * 13 12 11 38 38 H 1.08001 * 122.40230 * 180.22278 * 14 13 12 39 39 H 1.08001 * 125.01939 * 179.76342 * 15 14 13 40 40 H 0.97004 * 119.99747 * 265.00379 * 19 3 2 41 41 H 0.97000 * 120.00481 * 0.27542 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5649 1.4442 0.1257 6 7 4.0632 2.8167 0.0059 7 6 5.3858 3.0628 0.0867 8 8 6.1649 2.1465 0.2585 9 6 5.8904 4.4525 -0.0352 10 6 7.2415 4.8743 0.0331 11 6 7.1691 6.2330 -0.1390 12 6 8.2929 7.1809 -0.1570 13 6 8.1849 8.5275 -0.3303 14 6 9.3846 9.2034 -0.3039 15 6 10.4658 8.4372 -0.1239 16 16 9.9881 6.7525 0.0345 17 8 5.8635 6.5263 -0.2814 18 7 5.1739 5.5353 -0.2217 19 7 1.6525 2.0974 -1.2518 20 6 0.4158 2.6735 -1.3688 21 1 -0.2739 2.6453 -0.5381 22 6 0.0483 3.2936 -2.5551 23 7 0.8908 3.3328 -3.5656 24 14 -1.6386 4.0801 -2.7145 25 1 -1.7810 4.6763 -4.0671 26 1 -2.6870 3.0472 -2.5159 27 1 -1.7887 5.1418 -1.6872 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.8500 1.0375 1.0961 34 1 3.9954 0.8310 -0.6659 35 1 3.4411 3.5482 -0.1309 36 1 8.1222 4.2675 0.1835 37 1 7.2369 9.0245 -0.4734 38 1 9.4480 10.2747 -0.4247 39 1 11.4822 8.7998 -0.0814 40 1 2.2720 2.1230 -1.9978 41 1 1.7669 2.9248 -3.4827 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753481039.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:28 Heat of formation + Delta-G solvation = 68.883155 kcal Electronic energy + Delta-G solvation = -25379.724858 eV Core-core repulsion = 21583.177899 eV Total energy + Delta-G solvation = -3796.546960 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -45.14237 -39.48829 -38.12421 -36.89911 -34.20685 -34.00697 -33.01333 -32.53751 -29.66589 -28.99271 -27.99230 -25.32388 -24.61637 -23.39158 -22.97339 -22.30172 -20.71405 -20.26395 -19.28497 -18.71364 -17.92773 -17.48720 -16.89456 -16.70303 -15.84299 -15.56844 -15.31084 -14.73230 -14.39455 -14.18146 -13.71297 -13.63162 -13.59687 -13.47621 -13.21256 -13.02006 -12.85156 -12.71034 -12.09647 -11.68570 -11.67675 -11.27457 -11.03706 -10.80192 -10.64884 -10.62623 -10.55096 -10.38624 -10.16785 -10.09826 -9.89102 -9.21395 -8.97080 -8.95836 -8.87390 -8.62314 -7.11157 -6.12060 -3.13937 -0.01429 0.91254 1.17084 1.46755 1.62428 2.45123 2.81907 3.07203 3.23349 3.50066 3.52801 3.70335 3.88678 4.20913 4.60459 4.63431 4.70682 4.94903 5.00148 5.12725 5.19378 5.27529 5.33251 5.52624 5.55530 5.63031 5.78586 5.81638 5.85721 5.87794 5.95090 6.00817 6.27990 6.40334 6.47719 6.51847 6.69205 6.91665 7.20232 7.57891 7.77525 7.90393 8.22508 8.71526 9.15736 10.02772 10.17023 11.34934 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.014955 B = 0.002580 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.864467 B =10852.193140 C =12398.871008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.132 4.132 3 C 0.168 3.832 4 H 0.056 0.944 5 C 0.112 3.888 6 N -0.694 5.694 7 C 0.594 3.406 8 O -0.534 6.534 9 C -0.017 4.017 10 C -0.166 4.166 11 C 0.032 3.968 12 C -0.138 4.138 13 C -0.100 4.100 14 C -0.135 4.135 15 C -0.210 4.210 16 S 0.172 5.828 17 O 0.140 5.860 18 N -0.315 5.315 19 N -0.732 5.732 20 C -0.329 4.329 21 H 0.068 0.932 22 C -0.042 4.042 23 N -0.940 5.940 24 Si 1.076 2.924 25 H -0.286 1.286 26 H -0.295 1.295 27 H -0.295 1.295 28 H 0.086 0.914 29 H 0.033 0.967 30 H 0.040 0.960 31 H 0.055 0.945 32 H 0.044 0.956 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.417 0.583 36 H 0.182 0.818 37 H 0.152 0.848 38 H 0.148 0.852 39 H 0.171 0.829 40 H 0.367 0.633 41 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.508 8.553 9.291 22.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.173 4.173 3 C 0.058 3.942 4 H 0.074 0.926 5 C -0.012 4.012 6 N -0.346 5.346 7 C 0.377 3.623 8 O -0.410 6.410 9 C -0.175 4.175 10 C -0.190 4.190 11 C -0.032 4.032 12 C -0.256 4.256 13 C -0.133 4.133 14 C -0.164 4.164 15 C -0.346 4.346 16 S 0.437 5.563 17 O 0.061 5.939 18 N -0.012 5.012 19 N -0.376 5.376 20 C -0.460 4.460 21 H 0.086 0.914 22 C -0.240 4.240 23 N -0.585 5.585 24 Si 0.907 3.093 25 H -0.211 1.211 26 H -0.223 1.223 27 H -0.223 1.223 28 H 0.104 0.896 29 H 0.052 0.948 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.255 0.745 36 H 0.200 0.800 37 H 0.170 0.830 38 H 0.166 0.834 39 H 0.189 0.811 40 H 0.201 0.799 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 17.302 7.500 8.654 20.749 hybrid contribution 0.845 0.467 0.606 1.140 sum 18.148 7.967 9.260 21.876 Atomic orbital electron populations 1.21765 0.95479 0.99644 1.03427 1.22050 0.97222 0.98036 1.00019 1.20513 0.89433 0.93010 0.91276 0.92597 1.21832 0.96064 0.81702 1.01626 1.45900 1.06425 1.11630 1.70612 1.16840 0.83000 0.84782 0.77686 1.90768 1.56286 1.43714 1.50279 1.23353 0.91913 0.95125 1.07092 1.22580 0.97930 0.92572 1.05889 1.21259 0.84625 0.92554 1.04779 1.21790 0.94404 0.95092 1.14329 1.20784 1.00446 0.91618 1.00414 1.20052 0.91070 1.01723 1.03601 1.25963 1.03541 0.96045 1.09084 1.84316 0.95643 1.06982 1.69379 1.84967 1.14330 1.29505 1.65132 1.74290 1.18085 0.93864 1.14971 1.42459 1.16915 1.67039 1.11186 1.19975 0.92483 1.32591 1.00919 0.91425 1.25715 1.05712 1.00262 0.92339 1.70885 1.08232 1.47187 1.32227 0.83294 0.74271 0.75901 0.75834 1.21120 1.22279 1.22254 0.89553 0.94817 0.94072 0.92624 0.93698 0.91189 0.91391 0.74529 0.80035 0.83031 0.83442 0.81138 0.79898 0.93371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 9.18 37.16 0.34 -2.32 16 2 C -0.13 -2.31 5.61 -26.73 -0.15 -2.46 16 3 C 0.17 3.19 2.59 -67.93 -0.18 3.01 16 4 H 0.06 1.09 8.08 -51.93 -0.42 0.67 16 5 C 0.11 1.93 5.23 -4.04 -0.02 1.91 16 6 N -0.69 -12.50 5.39 -61.09 -0.33 -12.82 16 7 C 0.59 10.67 7.85 -12.10 -0.09 10.57 16 8 O -0.53 -10.41 16.94 5.38 0.09 -10.32 16 9 C -0.02 -0.27 7.17 -82.66 -0.59 -0.87 16 10 C -0.17 -2.22 10.77 -38.65 -0.42 -2.64 16 11 C 0.03 0.40 7.28 -36.42 -0.26 0.13 16 12 C -0.14 -1.36 6.45 -36.76 -0.24 -1.60 16 13 C -0.10 -0.83 10.17 -40.50 -0.41 -1.25 16 14 C -0.13 -0.87 10.15 -41.35 -0.42 -1.29 16 15 C -0.21 -1.26 11.21 29.15 0.33 -0.93 16 16 S 0.17 1.31 23.11 -107.50 -2.48 -1.18 16 17 O 0.14 2.00 11.21 15.75 0.18 2.18 16 18 N -0.31 -5.20 11.81 33.36 0.39 -4.81 16 19 N -0.73 -17.06 4.50 -53.43 -0.24 -17.30 16 20 C -0.33 -8.61 7.75 -15.06 -0.12 -8.73 16 21 H 0.07 1.75 7.32 -52.48 -0.38 1.37 16 22 C -0.04 -1.18 5.50 -17.43 -0.10 -1.27 16 23 N -0.94 -28.44 13.70 55.49 0.76 -27.68 16 24 Si 1.08 25.44 29.92 -169.99 -5.09 20.36 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 H -0.30 -6.68 7.11 56.52 0.40 -6.28 16 27 H -0.30 -6.70 7.11 56.52 0.40 -6.30 16 28 H 0.09 1.87 5.99 -51.93 -0.31 1.56 16 29 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.04 0.71 8.14 -51.92 -0.42 0.29 16 31 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 1.10 8.14 -51.92 -0.42 0.68 16 34 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.42 8.00 7.89 -40.82 -0.32 7.68 16 36 H 0.18 2.06 8.06 -52.49 -0.42 1.64 16 37 H 0.15 1.11 8.06 -52.49 -0.42 0.69 16 38 H 0.15 0.62 8.06 -52.49 -0.42 0.20 16 39 H 0.17 0.57 8.06 -52.49 -0.42 0.15 16 40 H 0.37 9.16 6.63 -40.82 -0.27 8.88 16 41 H 0.25 7.65 6.77 -40.82 -0.28 7.38 16 LS Contribution 368.60 15.07 5.55 5.55 Total: -1.00 -31.46 368.60 -8.50 -39.96 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: -5.01 Total: 13.79 kcal Atomic # 6 Polarization: -5.39 SS G_CDS: -2.33 Total: -7.72 kcal Atomic # 7 Polarization: -63.20 SS G_CDS: 0.58 Total: -62.62 kcal Atomic # 8 Polarization: -8.41 SS G_CDS: 0.27 Total: -8.14 kcal Atomic # 14 Polarization: 25.44 SS G_CDS: -5.09 Total: 20.36 kcal Atomic # 16 Polarization: 1.31 SS G_CDS: -2.48 Total: -1.18 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.46 -8.50 -39.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753481039.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.841 kcal (2) G-P(sol) polarization free energy of solvation -31.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds