Wall clock time and date at job start Tue Mar 31 2020 18:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47262 * 2 1 4 4 H 1.09004 * 109.46812 * 304.99956 * 3 2 1 5 5 C 1.52999 * 109.47114 * 184.99769 * 3 2 1 6 6 N 1.46500 * 109.47226 * 184.99495 * 5 3 2 7 7 C 1.34776 * 119.99923 * 180.02562 * 6 5 3 8 8 O 1.21486 * 120.00411 * 0.02562 * 7 6 5 9 9 C 1.48351 * 119.99670 * 180.02562 * 7 6 5 10 10 C 1.41707 * 126.81069 * 179.71551 * 9 7 6 11 11 C 1.37158 * 103.79789 * 179.85060 * 10 9 7 12 12 C 1.47026 * 126.85843 * 180.09214 * 11 10 9 13 13 C 1.36199 * 125.33331 * 180.02562 * 12 11 10 14 14 C 1.37718 * 114.44001 * 179.79086 * 13 12 11 15 15 C 1.33725 * 115.19251 * 0.49583 * 14 13 12 16 16 S 1.75827 * 109.96593 * 359.72893 * 15 14 13 17 17 O 1.34574 * 106.28243 * 0.39690 * 11 10 9 18 18 N 1.20875 * 111.69013 * 359.72980 * 17 11 10 19 19 N 1.46498 * 109.47036 * 65.00021 * 3 2 1 20 20 C 1.36943 * 119.99752 * 274.72222 * 19 3 2 21 21 H 1.08002 * 119.99793 * 0.27665 * 20 19 3 22 22 C 1.38811 * 120.00012 * 180.27737 * 20 19 3 23 23 N 1.31624 * 119.99698 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00072 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47159 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.47290 * 120.00044 * 24 22 20 27 27 H 1.48503 * 109.47163 * 240.00049 * 24 22 20 28 28 H 1.09000 * 109.47004 * 300.00349 * 1 2 3 29 29 H 1.08997 * 109.46461 * 60.00164 * 1 2 3 30 30 H 1.09000 * 109.46616 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47004 * 239.99651 * 2 1 3 32 32 H 1.09005 * 109.47038 * 120.00011 * 2 1 3 33 33 H 1.08995 * 109.47415 * 304.99804 * 5 3 2 34 34 H 1.09008 * 109.47087 * 65.00143 * 5 3 2 35 35 H 0.96998 * 120.00120 * 0.02562 * 6 5 3 36 36 H 1.08002 * 128.09924 * 359.97438 * 10 9 7 37 37 H 1.07998 * 122.77902 * 359.96800 * 13 12 11 38 38 H 1.08003 * 122.40046 * 180.23084 * 14 13 12 39 39 H 1.08004 * 125.02039 * 179.76388 * 15 14 13 40 40 H 0.97001 * 120.00384 * 95.00578 * 19 3 2 41 41 H 0.96999 * 119.99739 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5649 1.4442 -0.1257 6 7 4.0632 2.8167 -0.0060 7 6 5.3858 3.0629 -0.0869 8 8 6.1648 2.1468 -0.2595 9 6 5.8903 4.4526 0.0348 10 6 7.2424 4.8731 -0.0222 11 6 7.1689 6.2334 0.1378 12 6 8.2928 7.1811 0.1563 13 6 8.1839 8.5291 0.3183 14 6 9.3845 9.2035 0.3043 15 6 10.4657 8.4374 0.1244 16 16 9.9880 6.7527 -0.0345 17 8 5.8634 6.5264 0.2813 18 7 5.1739 5.5354 0.2222 19 7 1.6525 2.0974 1.2518 20 6 0.4178 2.6784 1.3668 21 1 -0.2719 2.6498 0.5362 22 6 0.0527 3.3040 2.5509 23 7 0.8936 3.3393 3.5630 24 14 -1.6317 4.0959 2.7081 25 1 -2.3821 3.9193 1.4389 26 1 -2.3795 3.4527 3.8182 27 1 -1.4730 5.5448 2.9923 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 3.9955 0.8311 0.6660 34 1 3.8500 1.0376 -1.0960 35 1 3.4412 3.5482 0.1314 36 1 8.1240 4.2651 -0.1615 37 1 7.2348 9.0273 0.4499 38 1 9.4479 10.2749 0.4254 39 1 11.4823 8.7998 0.0835 40 1 2.2720 2.1232 1.9978 41 1 0.6383 3.7761 4.3906 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753481040.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:32 Heat of formation + Delta-G solvation = 68.230345 kcal Electronic energy + Delta-G solvation = -25333.948895 eV Core-core repulsion = 21537.373628 eV Total energy + Delta-G solvation = -3796.575268 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -45.09299 -39.40300 -38.10056 -36.75928 -34.14922 -33.87176 -32.92522 -32.33571 -29.78359 -28.97235 -28.10715 -25.31278 -24.62331 -23.47847 -22.93145 -22.22888 -20.65491 -20.12035 -19.22939 -18.68064 -17.87807 -17.31627 -16.83795 -16.55790 -15.75354 -15.51001 -15.35782 -14.62969 -14.35415 -14.00521 -13.76215 -13.60858 -13.57171 -13.22603 -13.05493 -12.97526 -12.71180 -12.66669 -12.20263 -11.63590 -11.48358 -11.24845 -10.98531 -10.89390 -10.77386 -10.60708 -10.50463 -10.45980 -10.20398 -10.10371 -9.97421 -9.54757 -8.96686 -8.93572 -8.78434 -8.58981 -7.03973 -5.80908 -3.10539 0.01598 0.93890 1.22822 1.49126 1.66328 2.47783 2.86288 3.14447 3.31236 3.40588 3.46620 3.48706 3.94444 4.25805 4.54791 4.62713 4.75353 4.99112 5.03429 5.15605 5.24826 5.35851 5.43216 5.53503 5.58720 5.66971 5.84165 5.88741 5.92714 5.93827 5.97373 6.09811 6.39729 6.47896 6.54655 6.57809 6.77400 6.99434 7.23559 7.66117 7.67345 7.96631 8.30907 8.36145 9.48014 10.01966 10.37600 11.41028 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.014844 B = 0.002580 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.835172 B =10849.557773 C =12408.196816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.133 4.133 3 C 0.162 3.838 4 H 0.055 0.945 5 C 0.113 3.887 6 N -0.692 5.692 7 C 0.594 3.406 8 O -0.536 6.536 9 C -0.016 4.016 10 C -0.166 4.166 11 C 0.030 3.970 12 C -0.136 4.136 13 C -0.101 4.101 14 C -0.134 4.134 15 C -0.211 4.211 16 S 0.172 5.828 17 O 0.140 5.860 18 N -0.314 5.314 19 N -0.722 5.722 20 C -0.238 4.238 21 H 0.074 0.926 22 C -0.011 4.011 23 N -0.928 5.928 24 Si 0.903 3.097 25 H -0.280 1.280 26 H -0.292 1.292 27 H -0.292 1.292 28 H 0.085 0.915 29 H 0.040 0.960 30 H 0.033 0.967 31 H 0.044 0.956 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.418 0.582 36 H 0.182 0.818 37 H 0.152 0.848 38 H 0.148 0.852 39 H 0.171 0.829 40 H 0.385 0.615 41 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.682 8.501 -8.928 22.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.174 4.174 3 C 0.052 3.948 4 H 0.073 0.927 5 C -0.011 4.011 6 N -0.343 5.343 7 C 0.377 3.623 8 O -0.412 6.412 9 C -0.174 4.174 10 C -0.189 4.189 11 C -0.034 4.034 12 C -0.255 4.255 13 C -0.134 4.134 14 C -0.164 4.164 15 C -0.347 4.347 16 S 0.437 5.563 17 O 0.060 5.940 18 N -0.011 5.011 19 N -0.364 5.364 20 C -0.369 4.369 21 H 0.092 0.908 22 C -0.207 4.207 23 N -0.576 5.576 24 Si 0.734 3.266 25 H -0.205 1.205 26 H -0.219 1.219 27 H -0.219 1.219 28 H 0.104 0.896 29 H 0.059 0.941 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.255 0.745 36 H 0.199 0.801 37 H 0.169 0.831 38 H 0.165 0.835 39 H 0.188 0.812 40 H 0.219 0.781 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 18.481 6.667 -9.170 21.681 hybrid contribution -1.078 1.825 0.725 2.240 sum 17.404 8.492 -8.445 21.126 Atomic orbital electron populations 1.21766 0.95646 0.99658 1.03299 1.22063 0.97050 0.98183 1.00080 1.20578 0.89568 0.93063 0.91603 0.92716 1.21815 0.96063 0.81704 1.01526 1.45886 1.06386 1.11684 1.70375 1.16826 0.83049 0.84716 0.77737 1.90763 1.56314 1.43715 1.50431 1.23372 0.91834 0.95186 1.06970 1.22582 0.97948 0.92513 1.05879 1.21255 0.84635 0.92525 1.04989 1.21795 0.94401 0.95052 1.14216 1.20777 1.00411 0.91618 1.00570 1.20045 0.91070 1.01710 1.03609 1.25955 1.03529 0.96092 1.09145 1.84316 0.95706 1.06957 1.69355 1.84967 1.14330 1.29566 1.65147 1.74289 1.18049 0.93893 1.14880 1.42461 1.17026 1.65726 1.11174 1.19235 0.91970 1.27550 0.98115 0.90819 1.24743 0.98108 1.01431 0.96422 1.69674 1.35139 1.48728 1.04067 0.86184 0.84009 0.78963 0.77426 1.20536 1.21944 1.21880 0.89645 0.94094 0.94824 0.93774 0.92445 0.91293 0.91326 0.74454 0.80061 0.83055 0.83484 0.81171 0.78104 0.93541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 9.18 37.16 0.34 -2.27 16 2 C -0.13 -2.29 5.61 -26.73 -0.15 -2.44 16 3 C 0.16 3.04 2.59 -67.93 -0.18 2.87 16 4 H 0.05 1.04 8.08 -51.93 -0.42 0.62 16 5 C 0.11 1.95 5.23 -4.04 -0.02 1.93 16 6 N -0.69 -12.49 5.39 -61.09 -0.33 -12.82 16 7 C 0.59 10.72 7.85 -12.10 -0.09 10.62 16 8 O -0.54 -10.49 16.94 5.38 0.09 -10.40 16 9 C -0.02 -0.25 7.17 -82.66 -0.59 -0.85 16 10 C -0.17 -2.23 10.77 -38.65 -0.42 -2.64 16 11 C 0.03 0.38 7.28 -36.41 -0.26 0.11 16 12 C -0.14 -1.35 6.45 -36.75 -0.24 -1.59 16 13 C -0.10 -0.85 10.17 -40.50 -0.41 -1.26 16 14 C -0.13 -0.88 10.15 -41.35 -0.42 -1.30 16 15 C -0.21 -1.28 11.21 29.15 0.33 -0.95 16 16 S 0.17 1.32 23.11 -107.50 -2.48 -1.17 16 17 O 0.14 2.00 11.21 15.74 0.18 2.17 16 18 N -0.31 -5.20 11.81 33.36 0.39 -4.81 16 19 N -0.72 -16.79 4.50 -53.43 -0.24 -17.04 16 20 C -0.24 -6.14 7.76 -15.06 -0.12 -6.26 16 21 H 0.07 1.86 7.33 -52.49 -0.38 1.48 16 22 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 23 N -0.93 -27.29 13.06 55.49 0.72 -26.56 16 24 Si 0.90 21.91 29.55 -169.99 -5.02 16.88 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 26 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 27 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 28 H 0.08 1.80 6.01 -51.93 -0.31 1.49 16 29 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.07 1.07 8.14 -51.92 -0.42 0.65 16 35 H 0.42 8.01 7.89 -40.82 -0.32 7.69 16 36 H 0.18 2.08 8.06 -52.49 -0.42 1.65 16 37 H 0.15 1.12 8.06 -52.49 -0.42 0.69 16 38 H 0.15 0.63 8.06 -52.48 -0.42 0.20 16 39 H 0.17 0.58 8.06 -52.48 -0.42 0.16 16 40 H 0.38 9.85 7.80 -40.82 -0.32 9.53 16 41 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 370.34 15.07 5.58 5.58 Total: -1.00 -30.59 370.34 -8.56 -39.15 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: -5.12 Total: 13.43 kcal Atomic # 6 Polarization: -2.09 SS G_CDS: -2.33 Total: -4.42 kcal Atomic # 7 Polarization: -61.77 SS G_CDS: 0.55 Total: -61.22 kcal Atomic # 8 Polarization: -8.50 SS G_CDS: 0.27 Total: -8.23 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.88 kcal Atomic # 16 Polarization: 1.32 SS G_CDS: -2.48 Total: -1.17 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.59 -8.56 -39.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753481040.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.378 kcal (2) G-P(sol) polarization free energy of solvation -30.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds