Wall clock time and date at job start Tue Mar 31 2020 18:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47262 * 2 1 4 4 H 1.09004 * 109.46812 * 304.99956 * 3 2 1 5 5 C 1.52999 * 109.47114 * 184.99769 * 3 2 1 6 6 N 1.46500 * 109.47226 * 184.99495 * 5 3 2 7 7 C 1.34776 * 119.99923 * 180.02562 * 6 5 3 8 8 O 1.21486 * 120.00411 * 0.02562 * 7 6 5 9 9 C 1.48351 * 119.99670 * 180.02562 * 7 6 5 10 10 C 1.41707 * 126.81069 * 179.71551 * 9 7 6 11 11 C 1.37158 * 103.79789 * 179.85060 * 10 9 7 12 12 C 1.47026 * 126.85843 * 180.09214 * 11 10 9 13 13 C 1.36199 * 125.33331 * 180.02562 * 12 11 10 14 14 C 1.37718 * 114.44001 * 179.79086 * 13 12 11 15 15 C 1.33725 * 115.19251 * 0.49583 * 14 13 12 16 16 S 1.75827 * 109.96593 * 359.72893 * 15 14 13 17 17 O 1.34574 * 106.28243 * 0.39690 * 11 10 9 18 18 N 1.20875 * 111.69013 * 359.72980 * 17 11 10 19 19 N 1.46498 * 109.47036 * 65.00021 * 3 2 1 20 20 C 1.36943 * 119.99752 * 274.72222 * 19 3 2 21 21 H 1.08002 * 119.99793 * 0.27665 * 20 19 3 22 22 C 1.38811 * 120.00012 * 180.27737 * 20 19 3 23 23 N 1.31624 * 119.99698 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00072 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47159 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.47290 * 120.00044 * 24 22 20 27 27 H 1.48503 * 109.47163 * 240.00049 * 24 22 20 28 28 H 1.09000 * 109.47004 * 300.00349 * 1 2 3 29 29 H 1.08997 * 109.46461 * 60.00164 * 1 2 3 30 30 H 1.09000 * 109.46616 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47004 * 239.99651 * 2 1 3 32 32 H 1.09005 * 109.47038 * 120.00011 * 2 1 3 33 33 H 1.08995 * 109.47415 * 304.99804 * 5 3 2 34 34 H 1.09008 * 109.47087 * 65.00143 * 5 3 2 35 35 H 0.96998 * 120.00120 * 0.02562 * 6 5 3 36 36 H 1.08002 * 128.09924 * 359.97438 * 10 9 7 37 37 H 1.07998 * 122.77902 * 359.96800 * 13 12 11 38 38 H 1.08003 * 122.40046 * 180.23084 * 14 13 12 39 39 H 1.08004 * 125.02039 * 179.76388 * 15 14 13 40 40 H 0.97001 * 120.00384 * 95.00578 * 19 3 2 41 41 H 0.96999 * 119.99739 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5649 1.4442 -0.1257 6 7 4.0632 2.8167 -0.0060 7 6 5.3858 3.0629 -0.0869 8 8 6.1648 2.1468 -0.2595 9 6 5.8903 4.4526 0.0348 10 6 7.2424 4.8731 -0.0222 11 6 7.1689 6.2334 0.1378 12 6 8.2928 7.1811 0.1563 13 6 8.1839 8.5291 0.3183 14 6 9.3845 9.2035 0.3043 15 6 10.4657 8.4374 0.1244 16 16 9.9880 6.7527 -0.0345 17 8 5.8634 6.5264 0.2813 18 7 5.1739 5.5354 0.2222 19 7 1.6525 2.0974 1.2518 20 6 0.4178 2.6784 1.3668 21 1 -0.2719 2.6498 0.5362 22 6 0.0527 3.3040 2.5509 23 7 0.8936 3.3393 3.5630 24 14 -1.6317 4.0959 2.7081 25 1 -2.3821 3.9193 1.4389 26 1 -2.3795 3.4527 3.8182 27 1 -1.4730 5.5448 2.9923 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 3.9955 0.8311 0.6660 34 1 3.8500 1.0376 -1.0960 35 1 3.4412 3.5482 0.1314 36 1 8.1240 4.2651 -0.1615 37 1 7.2348 9.0273 0.4499 38 1 9.4479 10.2749 0.4254 39 1 11.4823 8.7998 0.0835 40 1 2.2720 2.1232 1.9978 41 1 0.6383 3.7761 4.3906 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753481040.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:31 Heat of formation + Delta-G solvation = 48.873737 kcal Electronic energy + Delta-G solvation = -25334.788261 eV Core-core repulsion = 21537.373628 eV Total energy + Delta-G solvation = -3797.414633 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -46.23838 -40.84366 -38.69907 -38.36090 -35.48372 -35.23334 -34.25481 -33.81560 -31.53571 -29.84045 -29.58339 -26.58347 -25.61568 -25.11556 -24.13931 -23.51364 -21.80087 -21.49391 -20.37448 -19.43480 -19.18229 -19.03880 -18.03650 -17.60633 -17.07034 -16.94560 -16.35367 -16.24631 -15.71330 -15.51428 -15.11923 -14.83960 -14.63288 -14.37788 -14.23639 -14.18920 -13.85863 -13.58474 -13.37787 -13.02764 -12.85242 -12.81693 -12.65807 -12.39335 -12.10521 -11.91694 -11.82224 -11.72752 -11.68344 -11.51680 -11.44094 -11.34585 -10.93135 -10.23481 -9.51243 -9.35019 -9.00943 -7.90359 -5.17780 -0.73458 0.03093 0.29242 0.81716 0.94205 1.46971 1.48339 1.56699 1.77334 1.83260 1.93581 1.98922 2.57217 2.75443 3.25270 3.44354 3.67432 3.83254 3.88666 3.98457 4.04950 4.22035 4.33408 4.44684 4.47755 4.53860 4.60995 4.64811 4.68429 4.84019 5.05154 5.06781 5.07363 5.18598 5.26986 5.31829 5.42799 5.52946 5.58704 5.72137 6.23636 6.29784 6.77142 6.90956 7.37359 8.08533 8.32870 9.32931 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.014844 B = 0.002580 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.835172 B =10849.557773 C =12408.196816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.127 4.127 3 C 0.162 3.838 4 H 0.058 0.942 5 C 0.119 3.881 6 N -0.695 5.695 7 C 0.594 3.406 8 O -0.554 6.554 9 C -0.035 4.035 10 C -0.177 4.177 11 C 0.052 3.948 12 C -0.181 4.181 13 C -0.089 4.089 14 C -0.146 4.146 15 C -0.187 4.187 16 S 0.174 5.826 17 O 0.139 5.861 18 N -0.343 5.343 19 N -0.729 5.729 20 C -0.215 4.215 21 H 0.081 0.919 22 C -0.075 4.075 23 N -0.969 5.969 24 Si 0.960 3.040 25 H -0.265 1.265 26 H -0.300 1.300 27 H -0.300 1.300 28 H 0.047 0.953 29 H 0.048 0.952 30 H 0.055 0.945 31 H 0.079 0.921 32 H 0.048 0.952 33 H 0.061 0.939 34 H 0.092 0.908 35 H 0.412 0.588 36 H 0.197 0.803 37 H 0.157 0.843 38 H 0.175 0.825 39 H 0.203 0.797 40 H 0.371 0.629 41 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.116 9.370 -10.499 24.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.168 4.168 3 C 0.054 3.946 4 H 0.076 0.924 5 C -0.005 4.005 6 N -0.345 5.345 7 C 0.378 3.622 8 O -0.433 6.433 9 C -0.192 4.192 10 C -0.200 4.200 11 C -0.012 4.012 12 C -0.299 4.299 13 C -0.123 4.123 14 C -0.175 4.175 15 C -0.324 4.324 16 S 0.439 5.561 17 O 0.060 5.940 18 N -0.041 5.041 19 N -0.370 5.370 20 C -0.347 4.347 21 H 0.099 0.901 22 C -0.267 4.267 23 N -0.620 5.620 24 Si 0.791 3.209 25 H -0.189 1.189 26 H -0.227 1.227 27 H -0.227 1.227 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.097 0.903 32 H 0.067 0.933 33 H 0.080 0.920 34 H 0.110 0.890 35 H 0.248 0.752 36 H 0.214 0.786 37 H 0.174 0.826 38 H 0.192 0.808 39 H 0.220 0.780 40 H 0.203 0.797 41 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 19.900 7.501 -10.802 23.853 hybrid contribution -1.351 1.642 1.122 2.404 sum 18.549 9.143 -9.680 22.833 Atomic orbital electron populations 1.21699 0.95935 1.00689 1.01758 1.21968 0.96671 0.96800 1.01345 1.20760 0.90622 0.93764 0.89480 0.92420 1.21797 0.94774 0.81442 1.02448 1.45928 1.06455 1.11719 1.70400 1.17012 0.82751 0.85340 0.77071 1.90735 1.56585 1.44507 1.51430 1.23310 0.93161 0.94441 1.08241 1.22722 0.97242 0.93096 1.06985 1.21635 0.84318 0.92803 1.02488 1.21886 0.94631 0.95402 1.17944 1.21095 1.01682 0.91189 0.98334 1.20313 0.90213 1.03118 1.03893 1.26444 1.04966 0.94789 1.06182 1.84337 0.94115 1.08488 1.69120 1.84909 1.15315 1.28894 1.64895 1.74269 1.19055 0.94355 1.16421 1.42593 1.16026 1.66035 1.12314 1.19536 0.92495 1.25089 0.97569 0.90112 1.25415 1.01158 1.03444 0.96721 1.69824 1.36866 1.50884 1.04448 0.85253 0.80754 0.77372 0.77527 1.18890 1.22728 1.22740 0.93362 0.93256 0.92636 0.90260 0.93343 0.92041 0.89018 0.75177 0.78558 0.82582 0.80804 0.77986 0.79703 0.94481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.86 9.18 71.98 0.66 -4.20 16 2 C -0.13 -4.15 5.61 30.60 0.17 -3.98 16 3 C 0.16 5.95 2.59 44.99 0.12 6.07 16 4 H 0.06 2.11 8.08 -2.39 -0.02 2.09 16 5 C 0.12 4.04 5.23 86.38 0.45 4.49 16 6 N -0.69 -25.48 5.39 -465.49 -2.51 -27.98 16 7 C 0.59 21.90 7.85 86.94 0.68 22.58 16 8 O -0.55 -21.90 16.94 -3.67 -0.06 -21.96 16 9 C -0.03 -1.17 7.17 42.79 0.31 -0.86 16 10 C -0.18 -4.83 10.77 22.87 0.25 -4.58 16 11 C 0.05 1.30 7.28 24.32 0.18 1.48 16 12 C -0.18 -3.41 6.45 24.10 0.16 -3.25 16 13 C -0.09 -1.34 10.17 21.67 0.22 -1.12 16 14 C -0.15 -1.45 10.15 21.12 0.21 -1.24 16 15 C -0.19 -1.61 11.21 66.79 0.75 -0.87 16 16 S 0.17 2.35 23.11 -56.49 -1.31 1.05 16 17 O 0.14 4.09 11.21 66.52 0.75 4.83 16 18 N -0.34 -11.79 11.81 -48.86 -0.58 -12.37 16 19 N -0.73 -34.29 4.50 -322.94 -1.45 -35.75 16 20 C -0.22 -11.16 7.76 84.03 0.65 -10.51 16 21 H 0.08 4.03 7.33 -2.91 -0.02 4.01 16 22 C -0.08 -4.21 5.50 84.86 0.47 -3.75 16 23 N -0.97 -58.74 13.06 21.65 0.28 -58.46 16 24 Si 0.96 45.82 29.55 68.60 2.03 47.84 16 25 H -0.26 -11.76 7.11 99.48 0.71 -11.06 16 26 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 27 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 28 H 0.05 2.00 6.01 -2.39 -0.01 1.98 16 29 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 33 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.09 2.71 8.14 -2.38 -0.02 2.69 16 35 H 0.41 16.24 7.89 -92.71 -0.73 15.51 16 36 H 0.20 4.52 8.06 -2.91 -0.02 4.50 16 37 H 0.16 2.09 8.06 -2.91 -0.02 2.07 16 38 H 0.17 0.79 8.06 -2.91 -0.02 0.76 16 39 H 0.20 0.42 8.06 -2.91 -0.02 0.40 16 40 H 0.37 19.53 7.80 -92.71 -0.72 18.81 16 41 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 Total: -1.00 -67.51 370.34 2.05 -65.46 By element: Atomic # 1 Polarization: 37.45 SS G_CDS: -0.37 Total: 37.08 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: 5.27 Total: 0.26 kcal Atomic # 7 Polarization: -130.31 SS G_CDS: -4.26 Total: -134.56 kcal Atomic # 8 Polarization: -17.81 SS G_CDS: 0.68 Total: -17.13 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.84 kcal Atomic # 16 Polarization: 2.35 SS G_CDS: -1.31 Total: 1.05 kcal Total: -67.51 2.05 -65.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753481040.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.330 kcal (2) G-P(sol) polarization free energy of solvation -67.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds