Wall clock time and date at job start Tue Mar 31 2020 19:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.46998 * 2 1 4 4 C 1.52996 * 109.46909 * 120.00202 * 2 1 3 5 5 N 1.46498 * 109.47059 * 294.99709 * 4 2 1 6 6 C 1.36943 * 119.99752 * 179.72430 * 5 4 2 7 7 H 1.08002 * 119.99793 * 0.27665 * 6 5 4 8 8 C 1.38811 * 120.00012 * 180.27737 * 6 5 4 9 9 N 1.31624 * 119.99698 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00072 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47213 * 60.00246 * 10 8 6 12 12 H 1.48502 * 109.47317 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47081 * 299.99875 * 10 8 6 14 14 C 1.53004 * 109.46816 * 240.00146 * 2 1 3 15 15 N 1.46500 * 109.47129 * 65.00299 * 14 2 1 16 16 C 1.34771 * 120.00026 * 179.97438 * 15 14 2 17 17 O 1.21639 * 119.99772 * 359.97438 * 16 15 14 18 18 C 1.47296 * 120.00427 * 179.97438 * 16 15 14 19 19 C 1.35163 * 122.42136 * 179.97438 * 18 16 15 20 20 S 1.71006 * 109.16347 * 180.02562 * 19 18 16 21 21 C 1.75992 * 90.59386 * 0.02562 * 20 19 18 22 22 C 1.47148 * 125.32714 * 180.02562 * 21 20 19 23 23 C 1.36233 * 125.96221 * 0.02562 * 22 21 20 24 24 C 1.40760 * 106.72880 * 180.02562 * 23 22 21 25 25 C 1.34843 * 107.06934 * 0.02562 * 24 23 22 26 26 O 1.34248 * 108.71802 * 359.73689 * 25 24 23 27 27 N 1.30124 * 109.34152 * 359.73433 * 21 20 19 28 28 H 1.08995 * 109.47053 * 300.00107 * 1 2 3 29 29 H 1.09001 * 109.46930 * 59.99747 * 1 2 3 30 30 H 1.09000 * 109.46973 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47066 * 174.99977 * 4 2 1 32 32 H 1.08994 * 109.46974 * 55.00124 * 4 2 1 33 33 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 34 34 H 0.96999 * 119.99739 * 180.02562 * 9 8 6 35 35 H 1.09005 * 109.46502 * 184.99774 * 14 2 1 36 36 H 1.08996 * 109.47343 * 304.99842 * 14 2 1 37 37 H 0.97004 * 120.00029 * 359.97438 * 15 14 2 38 38 H 1.08004 * 125.42166 * 359.97438 * 19 18 16 39 39 H 1.08004 * 126.63349 * 359.97438 * 23 22 21 40 40 H 1.07997 * 126.46456 * 179.97438 * 24 23 22 41 41 H 1.07996 * 125.64014 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6525 0.0353 2.4423 6 6 1.9967 -0.4236 3.6858 7 1 2.5577 -1.3410 3.7866 8 6 1.6245 0.2903 4.8166 9 7 0.9404 1.4080 4.6937 10 14 2.0946 -0.3353 6.5128 11 1 3.5734 -0.4243 6.6153 12 1 1.5818 0.6007 7.5453 13 1 1.5018 -1.6800 6.7262 14 6 2.0400 -0.7213 -1.2493 15 7 1.6525 0.0354 -2.4424 16 6 1.9964 -0.4129 -3.6659 17 8 2.6290 -1.4457 -3.7795 18 6 1.6063 0.3475 -4.8656 19 6 1.9256 -0.0566 -6.1153 20 16 1.3097 1.0706 -7.2442 21 6 0.6435 2.0431 -5.9374 22 6 -0.1067 3.2975 -6.1075 23 6 -0.4019 3.8986 -7.2938 24 6 -1.1264 5.0659 -6.9874 25 6 -1.2374 5.1218 -5.6447 26 8 -0.6254 4.0498 -5.1168 27 7 0.9129 1.4760 -4.7976 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1264 -0.7995 1.2056 32 1 1.6054 -1.7198 1.2950 33 1 1.1483 0.8591 2.3518 34 1 0.6807 1.9070 5.4838 35 1 3.1264 -0.7994 -1.2056 36 1 1.6054 -1.7198 -1.2953 37 1 1.1483 0.8592 -2.3518 38 1 2.4819 -0.9489 -6.3617 39 1 -0.1315 3.5478 -8.2789 40 1 -1.5185 5.7820 -7.6943 41 1 -1.7399 5.8979 -5.0866 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753628348.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:54 Heat of formation + Delta-G solvation = 32.836978 kcal Electronic energy + Delta-G solvation = -24787.597656 eV Core-core repulsion = 20989.487617 eV Total energy + Delta-G solvation = -3798.110039 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.98922 -40.69630 -38.82564 -36.78452 -34.36557 -33.62998 -32.50520 -32.14749 -30.03332 -29.39726 -27.14028 -25.95258 -25.02967 -23.40578 -22.37920 -22.13083 -20.92461 -20.20216 -19.56034 -19.05650 -17.85875 -17.22815 -16.72870 -16.61832 -16.04646 -15.75818 -15.57316 -14.84612 -14.58445 -14.21854 -13.95833 -13.87955 -13.55843 -13.44261 -13.41394 -13.03064 -12.98319 -12.58958 -12.41797 -12.26360 -12.00059 -11.02782 -10.87507 -10.68555 -10.66248 -10.57082 -10.52764 -10.38570 -10.33824 -10.22369 -9.97535 -9.82669 -9.64421 -9.04055 -8.84167 -8.52351 -6.89017 -5.73763 -3.02139 -0.28159 0.44135 1.01867 1.05138 1.80547 2.26936 2.56530 3.10133 3.18839 3.46073 3.46764 3.50798 3.52084 4.29870 4.42008 4.57731 4.61997 4.76275 4.78607 5.07882 5.22938 5.23572 5.26084 5.37930 5.44801 5.50948 5.60704 5.85719 5.89031 6.00463 6.01220 6.14935 6.30019 6.42808 6.47261 6.52746 6.70021 6.81747 6.90417 6.93452 7.49741 7.72786 8.08830 8.45434 9.56427 10.14203 10.49100 11.49233 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.015175 B = 0.002152 C = 0.001904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.692314 B =13006.530806 C =14698.573139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.111 4.111 3 H 0.077 0.923 4 C 0.161 3.839 5 N -0.731 5.731 6 C -0.238 4.238 7 H 0.070 0.930 8 C -0.015 4.015 9 N -0.935 5.935 10 Si 0.908 3.092 11 H -0.286 1.286 12 H -0.291 1.291 13 H -0.286 1.286 14 C 0.125 3.875 15 N -0.703 5.703 16 C 0.589 3.411 17 O -0.536 6.536 18 C 0.019 3.981 19 C -0.216 4.216 20 S 0.226 5.774 21 C 0.107 3.893 22 C 0.048 3.952 23 C -0.167 4.167 24 C -0.215 4.215 25 C -0.011 4.011 26 O -0.148 6.148 27 N -0.423 5.423 28 H 0.070 0.930 29 H 0.043 0.957 30 H 0.053 0.947 31 H 0.021 0.979 32 H 0.023 0.977 33 H 0.384 0.616 34 H 0.255 0.745 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.411 0.589 38 H 0.198 0.802 39 H 0.156 0.844 40 H 0.157 0.843 41 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.822 5.905 -31.781 32.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.130 4.130 3 H 0.096 0.904 4 C 0.033 3.967 5 N -0.375 5.375 6 C -0.370 4.370 7 H 0.088 0.912 8 C -0.211 4.211 9 N -0.584 5.584 10 Si 0.739 3.261 11 H -0.213 1.213 12 H -0.217 1.217 13 H -0.213 1.213 14 C 0.002 3.998 15 N -0.354 5.354 16 C 0.371 3.629 17 O -0.414 6.414 18 C -0.117 4.117 19 C -0.358 4.358 20 S 0.483 5.517 21 C -0.168 4.168 22 C -0.006 4.006 23 C -0.190 4.190 24 C -0.234 4.234 25 C -0.081 4.081 26 O -0.043 6.043 27 N -0.138 5.138 28 H 0.089 0.911 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.039 0.961 32 H 0.040 0.960 33 H 0.218 0.782 34 H 0.065 0.935 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.247 0.753 38 H 0.215 0.785 39 H 0.173 0.827 40 H 0.175 0.825 41 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -3.401 5.233 -31.942 32.546 hybrid contribution 0.019 0.005 1.640 1.640 sum -3.383 5.238 -30.302 30.937 Atomic orbital electron populations 1.21796 0.94593 1.01912 1.01645 1.21557 0.96830 1.00579 0.94010 0.90428 1.20570 0.96606 0.94184 0.85350 1.42337 1.67049 1.27598 1.00540 1.19198 1.28670 1.05454 0.83647 0.91203 1.24740 1.01047 0.97450 0.97849 1.69652 1.43463 1.16676 1.28566 0.86248 0.77988 0.77695 0.84145 1.21279 1.21719 1.21284 1.21514 1.00330 0.95298 0.82683 1.45916 1.56211 1.27979 1.05264 1.17052 0.79657 0.84054 0.82139 1.90826 1.40531 1.23665 1.86367 1.20233 1.02513 0.94126 0.94860 1.26696 1.06546 1.06630 0.95953 1.83724 1.46105 1.12970 1.08859 1.24305 1.03490 0.97508 0.91518 1.18826 1.03121 0.92256 0.86418 1.21815 1.02826 0.96856 0.97542 1.21759 1.05496 1.00267 0.95883 1.24439 0.99210 0.90304 0.94197 1.84225 1.54934 1.29818 1.35277 1.67190 1.12418 1.07689 1.26523 0.91100 0.93774 0.92837 0.96096 0.95966 0.78172 0.93494 0.91011 0.91011 0.75303 0.78525 0.82667 0.82502 0.77170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 8.94 37.16 0.33 -1.94 16 2 C -0.11 -1.82 2.46 -90.62 -0.22 -2.04 16 3 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 4 C 0.16 3.30 5.65 -4.04 -0.02 3.28 16 5 N -0.73 -18.75 5.33 -59.91 -0.32 -19.07 16 6 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 7 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 8 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 9 N -0.93 -28.58 13.06 55.49 0.72 -27.86 16 10 Si 0.91 22.76 29.55 -169.99 -5.02 17.73 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 12 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 13 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 14 C 0.13 1.86 5.06 -4.04 -0.02 1.84 16 15 N -0.70 -9.85 5.28 -61.42 -0.32 -10.17 16 16 C 0.59 8.58 7.79 -12.58 -0.10 8.48 16 17 O -0.54 -9.07 16.65 5.24 0.09 -8.98 16 18 C 0.02 0.24 6.64 -84.93 -0.56 -0.33 16 19 C -0.22 -2.03 10.56 29.64 0.31 -1.72 16 20 S 0.23 1.53 22.93 -107.50 -2.46 -0.94 16 21 C 0.11 1.08 7.46 -14.66 -0.11 0.97 16 22 C 0.05 0.45 7.24 -36.69 -0.27 0.18 16 23 C -0.17 -1.14 10.62 -39.35 -0.42 -1.55 16 24 C -0.21 -1.24 10.88 -39.83 -0.43 -1.67 16 25 C -0.01 -0.07 12.08 29.53 0.36 0.29 16 26 O -0.15 -1.51 10.67 4.55 0.05 -1.46 16 27 N -0.42 -5.22 10.08 -8.28 -0.08 -5.30 16 28 H 0.07 1.30 7.18 -51.93 -0.37 0.93 16 29 H 0.04 0.61 7.18 -51.93 -0.37 0.24 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.38 10.27 6.85 -40.82 -0.28 9.99 16 34 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 35 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 37 H 0.41 5.46 7.13 -40.82 -0.29 5.17 16 38 H 0.20 1.56 7.99 -52.48 -0.42 1.14 16 39 H 0.16 0.66 8.06 -52.48 -0.42 0.24 16 40 H 0.16 0.50 8.06 -52.49 -0.42 0.07 16 41 H 0.21 0.59 8.06 -52.49 -0.42 0.16 16 LS Contribution 371.26 15.07 5.59 5.59 Total: -1.00 -34.78 371.26 -8.25 -43.03 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -5.09 Total: 9.14 kcal Atomic # 6 Polarization: -0.31 SS G_CDS: -1.40 Total: -1.71 kcal Atomic # 7 Polarization: -62.40 SS G_CDS: 0.00 Total: -62.40 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.14 Total: -10.45 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.02 Total: 17.73 kcal Atomic # 16 Polarization: 1.53 SS G_CDS: -2.46 Total: -0.94 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.78 -8.25 -43.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753628348.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.868 kcal (2) G-P(sol) polarization free energy of solvation -34.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds