Wall clock time and date at job start Tue Mar 31 2020 19:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.47232 * 2 1 4 4 C 1.53000 * 109.47228 * 240.00272 * 2 1 3 5 5 N 1.46503 * 109.47176 * 64.99447 * 4 2 1 6 6 C 1.36935 * 119.99749 * 180.02562 * 5 4 2 7 7 H 1.08000 * 120.00313 * 0.02562 * 6 5 4 8 8 C 1.38809 * 119.99672 * 180.02562 * 6 5 4 9 9 N 1.31625 * 120.00295 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 119.99879 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47110 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.46962 * 120.00142 * 10 8 6 13 13 H 1.48499 * 109.47254 * 239.99923 * 10 8 6 14 14 C 1.52999 * 109.47227 * 119.99913 * 2 1 3 15 15 N 1.46505 * 109.47192 * 295.00016 * 14 2 1 16 16 C 1.34777 * 119.99724 * 180.02562 * 15 14 2 17 17 O 1.21633 * 120.00239 * 359.97438 * 16 15 14 18 18 C 1.47293 * 119.99500 * 179.72645 * 16 15 14 19 19 C 1.35171 * 122.41510 * 180.27358 * 18 16 15 20 20 S 1.71004 * 109.16378 * 179.97438 * 19 18 16 21 21 C 1.75996 * 90.59453 * 0.02562 * 20 19 18 22 22 C 1.47139 * 125.33111 * 180.02562 * 21 20 19 23 23 C 1.36236 * 125.95835 * 0.02562 * 22 21 20 24 24 C 1.40763 * 106.72550 * 180.02562 * 23 22 21 25 25 C 1.34843 * 107.07042 * 0.02562 * 24 23 22 26 26 O 1.34236 * 108.72088 * 359.73435 * 25 24 23 27 27 N 1.30131 * 109.34024 * 359.75749 * 21 20 19 28 28 H 1.09001 * 109.47487 * 59.99951 * 1 2 3 29 29 H 1.08992 * 109.47319 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46864 * 300.00168 * 1 2 3 31 31 H 1.08999 * 109.47129 * 184.99735 * 4 2 1 32 32 H 1.09002 * 109.46425 * 305.00064 * 4 2 1 33 33 H 0.97005 * 119.99578 * 0.02562 * 5 4 2 34 34 H 0.96998 * 120.00031 * 180.02562 * 9 8 6 35 35 H 1.09003 * 109.46690 * 175.00180 * 14 2 1 36 36 H 1.08993 * 109.47209 * 55.00207 * 14 2 1 37 37 H 0.97000 * 119.99792 * 359.97438 * 15 14 2 38 38 H 1.08001 * 125.42170 * 359.95376 * 19 18 16 39 39 H 1.08003 * 126.64083 * 0.02562 * 23 22 21 40 40 H 1.08002 * 126.46788 * 180.02562 * 24 23 22 41 41 H 1.08006 * 125.63539 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.6523 0.0354 -2.4424 6 6 2.0010 -0.4208 -3.6856 7 1 2.5614 -1.3385 -3.7866 8 6 1.6341 0.2964 -4.8160 9 7 0.9516 1.4151 -4.6930 10 14 2.1103 -0.3255 -6.5119 11 1 2.8693 -1.5948 -6.3786 12 1 0.8836 -0.5646 -7.3139 13 1 2.9561 0.6885 -7.1915 14 6 2.0400 -0.7212 1.2492 15 7 1.6524 0.0354 2.4424 16 6 1.9965 -0.4131 3.6659 17 8 2.6283 -1.4462 3.7795 18 6 1.6120 0.3508 4.8652 19 6 1.9358 -0.0506 6.1146 20 16 1.3258 1.0800 7.2433 21 6 0.6541 2.0493 5.9369 22 6 -0.0937 3.3051 6.1068 23 6 -0.3813 3.9107 7.2928 24 6 -1.1073 5.0771 6.9864 25 6 -1.2277 5.1274 5.6443 26 8 -0.6100 4.0591 5.1160 27 7 0.9272 1.4845 4.7968 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 3.1263 -0.7994 -1.2056 32 1 1.6053 -1.7197 -1.2951 33 1 1.1487 0.8595 -2.3517 34 1 0.6949 1.9160 -5.4830 35 1 3.1263 -0.7994 1.2055 36 1 1.6054 -1.7197 1.2952 37 1 1.1489 0.8595 2.3518 38 1 2.4912 -0.9435 6.3610 39 1 -0.1055 3.5632 8.2775 40 1 -1.4949 5.7961 7.6930 41 1 -1.7331 5.9019 5.0865 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753628349.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:57 Heat of formation + Delta-G solvation = 32.671004 kcal Electronic energy + Delta-G solvation = -24787.423734 eV Core-core repulsion = 20989.306497 eV Total energy + Delta-G solvation = -3798.117237 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.98972 -40.69670 -38.82628 -36.78718 -34.36878 -33.63029 -32.50787 -32.14797 -30.03581 -29.39720 -27.14148 -25.95488 -25.03251 -23.40839 -22.37998 -22.13481 -20.92503 -20.20335 -19.56097 -19.05700 -17.85924 -17.23053 -16.73105 -16.61864 -16.04730 -15.76173 -15.57127 -14.84905 -14.58604 -14.21608 -13.95867 -13.87978 -13.56970 -13.44377 -13.41430 -13.02476 -12.98062 -12.59592 -12.41853 -12.26488 -12.00797 -11.03002 -10.89774 -10.69594 -10.66362 -10.57174 -10.52817 -10.38542 -10.33813 -10.19693 -9.94243 -9.82723 -9.65518 -9.04143 -8.85511 -8.52338 -6.89185 -5.74339 -3.02630 -0.28227 0.44091 1.01838 1.05098 1.80527 2.26898 2.56513 3.10044 3.18816 3.45391 3.46058 3.51255 3.53409 4.29817 4.41978 4.57693 4.61647 4.76251 4.78546 5.07738 5.22912 5.23507 5.25966 5.37890 5.44596 5.50921 5.60471 5.85599 5.89002 6.00324 6.01027 6.14654 6.29813 6.42580 6.47094 6.52713 6.69815 6.81492 6.90213 6.93381 7.49684 7.73485 8.08749 8.44774 9.56017 10.13750 10.48629 11.48777 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.015163 B = 0.002153 C = 0.001905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.155084 B =13004.903713 C =14695.760821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.111 4.111 3 H 0.077 0.923 4 C 0.161 3.839 5 N -0.731 5.731 6 C -0.237 4.237 7 H 0.071 0.929 8 C -0.016 4.016 9 N -0.934 5.934 10 Si 0.907 3.093 11 H -0.280 1.280 12 H -0.292 1.292 13 H -0.292 1.292 14 C 0.125 3.875 15 N -0.703 5.703 16 C 0.589 3.411 17 O -0.536 6.536 18 C 0.019 3.981 19 C -0.216 4.216 20 S 0.226 5.774 21 C 0.107 3.893 22 C 0.047 3.953 23 C -0.167 4.167 24 C -0.215 4.215 25 C -0.011 4.011 26 O -0.148 6.148 27 N -0.423 5.423 28 H 0.070 0.930 29 H 0.053 0.947 30 H 0.043 0.957 31 H 0.021 0.979 32 H 0.023 0.977 33 H 0.384 0.616 34 H 0.254 0.746 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.411 0.589 38 H 0.198 0.802 39 H 0.156 0.844 40 H 0.157 0.843 41 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.799 5.851 31.829 32.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.130 4.130 3 H 0.096 0.904 4 C 0.033 3.967 5 N -0.375 5.375 6 C -0.368 4.368 7 H 0.089 0.911 8 C -0.212 4.212 9 N -0.583 5.583 10 Si 0.739 3.261 11 H -0.205 1.205 12 H -0.219 1.219 13 H -0.219 1.219 14 C 0.002 3.998 15 N -0.354 5.354 16 C 0.371 3.629 17 O -0.414 6.414 18 C -0.117 4.117 19 C -0.358 4.358 20 S 0.484 5.516 21 C -0.168 4.168 22 C -0.006 4.006 23 C -0.190 4.190 24 C -0.234 4.234 25 C -0.081 4.081 26 O -0.043 6.043 27 N -0.138 5.138 28 H 0.089 0.911 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.039 0.961 32 H 0.041 0.959 33 H 0.218 0.782 34 H 0.064 0.936 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.247 0.753 38 H 0.215 0.785 39 H 0.173 0.827 40 H 0.175 0.825 41 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -3.353 5.173 31.997 32.585 hybrid contribution 0.010 0.031 -1.645 1.645 sum -3.343 5.204 30.352 30.976 Atomic orbital electron populations 1.21793 0.94589 1.01914 1.01646 1.21556 0.96834 1.00579 0.94011 0.90431 1.20574 0.96602 0.94196 0.85347 1.42353 1.66930 1.27680 1.00580 1.19288 1.28521 1.05350 0.83646 0.91088 1.24744 1.01113 0.97435 0.97864 1.69672 1.43721 1.16591 1.28334 0.86106 0.77574 0.77817 0.84652 1.20549 1.21901 1.21900 1.21512 1.00326 0.95304 0.82683 1.45919 1.56253 1.27946 1.05261 1.17051 0.79634 0.84074 0.82137 1.90825 1.40514 1.23688 1.86355 1.20234 1.02682 0.93957 0.94863 1.26698 1.06549 1.06615 0.95969 1.83724 1.45937 1.13085 1.08904 1.24305 1.03449 0.97563 0.91506 1.18825 1.03263 0.92123 0.86416 1.21816 1.02921 0.96737 0.97558 1.21761 1.05424 1.00318 0.95910 1.24438 0.99077 0.90435 0.94197 1.84223 1.54799 1.29994 1.35234 1.67191 1.12496 1.07624 1.26508 0.91100 0.92834 0.93775 0.96091 0.95947 0.78176 0.93598 0.91015 0.91007 0.75303 0.78525 0.82666 0.82503 0.77168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 8.94 37.16 0.33 -1.94 16 2 C -0.11 -1.82 2.46 -90.62 -0.22 -2.04 16 3 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 4 C 0.16 3.29 5.65 -4.04 -0.02 3.27 16 5 N -0.73 -18.73 5.33 -59.91 -0.32 -19.05 16 6 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 7 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 8 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 9 N -0.93 -28.56 13.06 55.49 0.72 -27.84 16 10 Si 0.91 22.75 29.55 -169.99 -5.02 17.73 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 13 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 14 C 0.13 1.86 5.06 -4.04 -0.02 1.84 16 15 N -0.70 -9.84 5.28 -61.42 -0.32 -10.17 16 16 C 0.59 8.57 7.79 -12.58 -0.10 8.48 16 17 O -0.54 -9.06 16.65 5.25 0.09 -8.98 16 18 C 0.02 0.24 6.64 -84.94 -0.56 -0.33 16 19 C -0.22 -2.03 10.56 29.64 0.31 -1.71 16 20 S 0.23 1.53 22.93 -107.50 -2.46 -0.94 16 21 C 0.11 1.08 7.46 -14.66 -0.11 0.97 16 22 C 0.05 0.45 7.24 -36.69 -0.27 0.18 16 23 C -0.17 -1.14 10.62 -39.35 -0.42 -1.55 16 24 C -0.22 -1.24 10.88 -39.83 -0.43 -1.67 16 25 C -0.01 -0.07 12.08 29.53 0.36 0.29 16 26 O -0.15 -1.51 10.67 4.56 0.05 -1.46 16 27 N -0.42 -5.22 10.08 -8.28 -0.08 -5.30 16 28 H 0.07 1.30 7.18 -51.93 -0.37 0.92 16 29 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.04 0.61 7.18 -51.93 -0.37 0.24 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.38 10.26 6.85 -40.82 -0.28 9.98 16 34 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 35 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 36 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 37 H 0.41 5.45 7.13 -40.82 -0.29 5.16 16 38 H 0.20 1.56 7.99 -52.49 -0.42 1.14 16 39 H 0.16 0.66 8.06 -52.48 -0.42 0.24 16 40 H 0.16 0.50 8.06 -52.49 -0.42 0.07 16 41 H 0.21 0.59 8.06 -52.48 -0.42 0.16 16 LS Contribution 371.26 15.07 5.59 5.59 Total: -1.00 -34.82 371.26 -8.25 -43.06 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -5.09 Total: 9.03 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: -1.40 Total: -1.68 kcal Atomic # 7 Polarization: -62.36 SS G_CDS: 0.00 Total: -62.36 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.14 Total: -10.44 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.02 Total: 17.73 kcal Atomic # 16 Polarization: 1.53 SS G_CDS: -2.46 Total: -0.94 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.82 -8.25 -43.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753628349.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.733 kcal (2) G-P(sol) polarization free energy of solvation -34.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds