Wall clock time and date at job start Tue Mar 31 2020 19:23:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.47232 * 2 1 4 4 C 1.53000 * 109.47228 * 240.00272 * 2 1 3 5 5 N 1.46503 * 109.47176 * 64.99447 * 4 2 1 6 6 C 1.36935 * 119.99749 * 180.02562 * 5 4 2 7 7 H 1.08000 * 120.00313 * 0.02562 * 6 5 4 8 8 C 1.38809 * 119.99672 * 180.02562 * 6 5 4 9 9 N 1.31625 * 120.00295 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 119.99879 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47110 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.46962 * 120.00142 * 10 8 6 13 13 H 1.48499 * 109.47254 * 239.99923 * 10 8 6 14 14 C 1.52999 * 109.47227 * 119.99913 * 2 1 3 15 15 N 1.46505 * 109.47192 * 295.00016 * 14 2 1 16 16 C 1.34777 * 119.99724 * 180.02562 * 15 14 2 17 17 O 1.21633 * 120.00239 * 359.97438 * 16 15 14 18 18 C 1.47293 * 119.99500 * 179.72645 * 16 15 14 19 19 C 1.35171 * 122.41510 * 180.27358 * 18 16 15 20 20 S 1.71004 * 109.16378 * 179.97438 * 19 18 16 21 21 C 1.75996 * 90.59453 * 0.02562 * 20 19 18 22 22 C 1.47139 * 125.33111 * 180.02562 * 21 20 19 23 23 C 1.36236 * 125.95835 * 0.02562 * 22 21 20 24 24 C 1.40763 * 106.72550 * 180.02562 * 23 22 21 25 25 C 1.34843 * 107.07042 * 0.02562 * 24 23 22 26 26 O 1.34236 * 108.72088 * 359.73435 * 25 24 23 27 27 N 1.30131 * 109.34024 * 359.75749 * 21 20 19 28 28 H 1.09001 * 109.47487 * 59.99951 * 1 2 3 29 29 H 1.08992 * 109.47319 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46864 * 300.00168 * 1 2 3 31 31 H 1.08999 * 109.47129 * 184.99735 * 4 2 1 32 32 H 1.09002 * 109.46425 * 305.00064 * 4 2 1 33 33 H 0.97005 * 119.99578 * 0.02562 * 5 4 2 34 34 H 0.96998 * 120.00031 * 180.02562 * 9 8 6 35 35 H 1.09003 * 109.46690 * 175.00180 * 14 2 1 36 36 H 1.08993 * 109.47209 * 55.00207 * 14 2 1 37 37 H 0.97000 * 119.99792 * 359.97438 * 15 14 2 38 38 H 1.08001 * 125.42170 * 359.95376 * 19 18 16 39 39 H 1.08003 * 126.64083 * 0.02562 * 23 22 21 40 40 H 1.08002 * 126.46788 * 180.02562 * 24 23 22 41 41 H 1.08006 * 125.63539 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.6523 0.0354 -2.4424 6 6 2.0010 -0.4208 -3.6856 7 1 2.5614 -1.3385 -3.7866 8 6 1.6341 0.2964 -4.8160 9 7 0.9516 1.4151 -4.6930 10 14 2.1103 -0.3255 -6.5119 11 1 2.8693 -1.5948 -6.3786 12 1 0.8836 -0.5646 -7.3139 13 1 2.9561 0.6885 -7.1915 14 6 2.0400 -0.7212 1.2492 15 7 1.6524 0.0354 2.4424 16 6 1.9965 -0.4131 3.6659 17 8 2.6283 -1.4462 3.7795 18 6 1.6120 0.3508 4.8652 19 6 1.9358 -0.0506 6.1146 20 16 1.3258 1.0800 7.2433 21 6 0.6541 2.0493 5.9369 22 6 -0.0937 3.3051 6.1068 23 6 -0.3813 3.9107 7.2928 24 6 -1.1073 5.0771 6.9864 25 6 -1.2277 5.1274 5.6443 26 8 -0.6100 4.0591 5.1160 27 7 0.9272 1.4845 4.7968 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 3.1263 -0.7994 -1.2056 32 1 1.6053 -1.7197 -1.2951 33 1 1.1487 0.8595 -2.3517 34 1 0.6949 1.9160 -5.4830 35 1 3.1263 -0.7994 1.2055 36 1 1.6054 -1.7197 1.2952 37 1 1.1489 0.8595 2.3518 38 1 2.4912 -0.9435 6.3610 39 1 -0.1055 3.5632 8.2775 40 1 -1.4949 5.7961 7.6930 41 1 -1.7331 5.9019 5.0865 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753628349.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:56 Heat of formation + Delta-G solvation = 7.972518 kcal Electronic energy + Delta-G solvation = -24788.494740 eV Core-core repulsion = 20989.306497 eV Total energy + Delta-G solvation = -3799.188243 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.52547 -41.61449 -39.83071 -38.24906 -36.03187 -34.20329 -34.12381 -32.85813 -31.91554 -30.03016 -28.26263 -27.49467 -26.24187 -24.70702 -23.60357 -22.87816 -21.76665 -21.39482 -20.54947 -19.85637 -19.14068 -18.48441 -17.82485 -17.25410 -17.10177 -16.79529 -16.62530 -16.25070 -15.95228 -15.50943 -15.36788 -15.04064 -14.80308 -14.57906 -14.15706 -13.96297 -13.85731 -13.65590 -13.62028 -13.45880 -13.11366 -12.97708 -12.83896 -12.23421 -12.15057 -12.03840 -11.79267 -11.69790 -11.38748 -11.31639 -11.14053 -10.96553 -10.88227 -10.48195 -10.17932 -9.10296 -9.00834 -7.96185 -5.24966 -0.94175 -0.17282 0.29268 0.32809 1.17565 1.46941 1.47769 1.58118 1.70335 2.03077 2.10687 2.22230 2.55729 2.73564 3.37469 3.58072 3.66716 3.90796 3.95227 3.98998 4.04724 4.07822 4.15443 4.31029 4.49318 4.55735 4.65490 4.71755 4.74467 4.89230 4.93584 4.98841 5.01746 5.09368 5.23277 5.32580 5.41040 5.49161 5.49301 5.96710 6.18624 6.26417 6.45945 6.98792 7.32795 8.07527 8.31883 9.27695 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.015163 B = 0.002153 C = 0.001905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.155084 B =13004.903713 C =14695.760821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.095 4.095 3 H 0.073 0.927 4 C 0.159 3.841 5 N -0.742 5.742 6 C -0.245 4.245 7 H 0.076 0.924 8 C -0.077 4.077 9 N -0.969 5.969 10 Si 0.975 3.025 11 H -0.267 1.267 12 H -0.292 1.292 13 H -0.292 1.292 14 C 0.137 3.863 15 N -0.701 5.701 16 C 0.587 3.413 17 O -0.567 6.567 18 C -0.009 4.009 19 C -0.223 4.223 20 S 0.330 5.670 21 C 0.084 3.916 22 C 0.007 3.993 23 C -0.153 4.153 24 C -0.217 4.217 25 C -0.016 4.016 26 O -0.182 6.182 27 N -0.457 5.457 28 H 0.044 0.956 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.023 0.977 32 H 0.025 0.975 33 H 0.376 0.624 34 H 0.252 0.748 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.414 0.586 38 H 0.209 0.791 39 H 0.182 0.818 40 H 0.186 0.814 41 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.950 6.160 34.351 35.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.114 4.114 3 H 0.092 0.908 4 C 0.032 3.968 5 N -0.386 5.386 6 C -0.377 4.377 7 H 0.094 0.906 8 C -0.269 4.269 9 N -0.620 5.620 10 Si 0.804 3.196 11 H -0.191 1.191 12 H -0.219 1.219 13 H -0.220 1.220 14 C 0.013 3.987 15 N -0.351 5.351 16 C 0.372 3.628 17 O -0.447 6.447 18 C -0.146 4.146 19 C -0.366 4.366 20 S 0.589 5.411 21 C -0.190 4.190 22 C -0.046 4.046 23 C -0.176 4.176 24 C -0.236 4.236 25 C -0.086 4.086 26 O -0.078 6.078 27 N -0.174 5.174 28 H 0.064 0.936 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.041 0.959 32 H 0.043 0.957 33 H 0.208 0.792 34 H 0.060 0.940 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.251 0.749 38 H 0.226 0.774 39 H 0.199 0.801 40 H 0.203 0.797 41 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -3.497 5.470 34.564 35.169 hybrid contribution 0.021 0.009 -2.229 2.229 sum -3.476 5.479 32.335 32.980 Atomic orbital electron populations 1.21703 0.94084 1.02008 1.01375 1.21334 0.97054 0.99966 0.93046 0.90818 1.20710 0.96678 0.94153 0.85289 1.42535 1.66826 1.27790 1.01410 1.19681 1.27763 1.05279 0.84938 0.90649 1.25586 1.01747 0.97907 1.01660 1.69824 1.45233 1.17908 1.29071 0.85049 0.77100 0.77623 0.79840 1.19105 1.21931 1.21965 1.21278 1.00037 0.95108 0.82318 1.45841 1.56281 1.27934 1.05061 1.17394 0.78847 0.83817 0.82757 1.90790 1.41974 1.25037 1.86888 1.19928 1.05095 0.94871 0.94695 1.27027 1.05787 1.07568 0.96174 1.83282 1.42887 1.09669 1.05257 1.24710 1.03521 0.98180 0.92586 1.19130 1.05339 0.92864 0.87253 1.22235 1.01311 0.96306 0.97724 1.22172 1.04878 1.00422 0.96094 1.25207 0.98247 0.89941 0.95211 1.84194 1.55789 1.31239 1.36592 1.67129 1.13737 1.08096 1.28394 0.93643 0.92535 0.91663 0.95915 0.95655 0.79190 0.93961 0.91285 0.90917 0.74901 0.77417 0.80112 0.79668 0.74403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.33 8.94 71.98 0.64 -3.69 16 2 C -0.09 -3.15 2.46 -10.80 -0.03 -3.18 16 3 H 0.07 2.53 8.14 -2.38 -0.02 2.51 16 4 C 0.16 6.54 5.65 86.38 0.49 7.03 16 5 N -0.74 -38.69 5.33 -343.45 -1.83 -40.52 16 6 C -0.24 -14.03 9.99 84.03 0.84 -13.19 16 7 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 8 C -0.08 -4.51 5.50 84.86 0.47 -4.04 16 9 N -0.97 -60.30 13.06 21.65 0.28 -60.02 16 10 Si 0.97 47.06 29.55 68.60 2.03 49.09 16 11 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 12 H -0.29 -14.02 7.11 99.48 0.71 -13.32 16 13 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 14 C 0.14 4.07 5.06 86.38 0.44 4.51 16 15 N -0.70 -19.90 5.28 -466.48 -2.46 -22.36 16 16 C 0.59 17.38 7.79 86.62 0.68 18.06 16 17 O -0.57 -19.41 16.65 -4.14 -0.07 -19.48 16 18 C -0.01 -0.23 6.64 40.70 0.27 0.04 16 19 C -0.22 -3.92 10.56 67.11 0.71 -3.21 16 20 S 0.33 3.67 22.93 -56.49 -1.30 2.37 16 21 C 0.08 1.63 7.46 87.28 0.65 2.29 16 22 C 0.01 0.13 7.24 24.14 0.17 0.30 16 23 C -0.15 -1.71 10.62 22.42 0.24 -1.47 16 24 C -0.22 -1.95 10.88 22.11 0.24 -1.71 16 25 C -0.02 -0.19 12.08 67.04 0.81 0.62 16 26 O -0.18 -3.70 10.67 -6.61 -0.07 -3.77 16 27 N -0.46 -11.40 10.08 -180.10 -1.82 -13.21 16 28 H 0.04 1.70 7.18 -2.39 -0.02 1.68 16 29 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.06 1.81 7.18 -2.39 -0.02 1.80 16 31 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.38 20.64 6.85 -92.70 -0.64 20.00 16 34 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 35 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.41 11.22 7.13 -92.71 -0.66 10.56 16 38 H 0.21 3.02 7.99 -2.91 -0.02 3.00 16 39 H 0.18 0.88 8.06 -2.91 -0.02 0.85 16 40 H 0.19 0.49 8.06 -2.91 -0.02 0.47 16 41 H 0.24 0.89 8.06 -2.91 -0.02 0.87 16 Total: -1.00 -76.66 371.26 1.17 -75.50 By element: Atomic # 1 Polarization: 30.26 SS G_CDS: -0.21 Total: 30.05 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: 6.62 Total: 2.36 kcal Atomic # 7 Polarization: -130.28 SS G_CDS: -5.83 Total: -136.11 kcal Atomic # 8 Polarization: -23.11 SS G_CDS: -0.14 Total: -23.25 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 2.03 Total: 49.09 kcal Atomic # 16 Polarization: 3.67 SS G_CDS: -1.30 Total: 2.37 kcal Total: -76.66 1.17 -75.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753628349.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.468 kcal (2) G-P(sol) polarization free energy of solvation -76.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds