Wall clock time and date at job start Tue Mar 31 2020 19:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47196 * 2 1 4 4 C 1.52994 * 109.47383 * 120.00422 * 2 1 3 5 5 C 1.52999 * 109.47423 * 184.99986 * 4 2 1 6 6 N 1.46500 * 109.47576 * 179.97438 * 5 4 2 7 7 C 1.36934 * 120.00418 * 179.97438 * 6 5 4 8 8 H 1.08005 * 119.99870 * 0.02562 * 7 6 5 9 9 C 1.38809 * 120.00429 * 180.02562 * 7 6 5 10 10 N 1.31618 * 120.00164 * 180.02562 * 9 7 6 11 11 Si 1.86800 * 119.99815 * 0.02562 * 9 7 6 12 12 H 1.48502 * 109.47274 * 89.99902 * 11 9 7 13 13 H 1.48496 * 109.47253 * 209.99867 * 11 9 7 14 14 H 1.48501 * 109.47341 * 330.00142 * 11 9 7 15 15 N 1.46506 * 109.47171 * 240.00395 * 2 1 3 16 16 C 1.34773 * 119.99968 * 84.99494 * 15 2 1 17 17 O 1.21610 * 120.00228 * 359.73130 * 16 15 2 18 18 C 1.47306 * 119.99935 * 180.02562 * 16 15 2 19 19 C 1.34216 * 124.79198 * 179.44895 * 18 16 15 20 20 C 1.39566 * 115.53149 * 179.85635 * 19 18 16 21 21 C 1.47752 * 129.59657 * 180.16828 * 20 19 18 22 22 C 1.34062 * 119.55930 * 180.26246 * 21 20 19 23 23 N 1.36554 * 121.42274 * 0.02562 * 22 21 20 24 24 H 0.97000 * 119.16407 * 179.97438 * 23 22 21 25 25 C 1.34305 * 121.67966 * 0.02562 * 23 22 21 26 26 O 1.21950 * 119.69432 * 180.02562 * 25 23 22 27 27 C 1.39388 * 112.90253 * 0.41994 * 20 19 18 28 28 S 1.75559 * 124.78899 * 359.75279 * 18 16 15 29 29 H 1.08999 * 109.47547 * 60.00086 * 1 2 3 30 30 H 1.09000 * 109.47196 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46922 * 299.99659 * 1 2 3 32 32 H 1.08999 * 109.47347 * 304.99653 * 4 2 1 33 33 H 1.08999 * 109.47704 * 64.99866 * 4 2 1 34 34 H 1.09000 * 109.47110 * 300.00161 * 5 4 2 35 35 H 1.09004 * 109.47224 * 59.99428 * 5 4 2 36 36 H 0.96999 * 119.99763 * 0.02562 * 6 5 4 37 37 H 0.97006 * 119.99693 * 180.02562 * 10 9 7 38 38 H 0.97004 * 120.00014 * 265.00346 * 15 2 1 39 39 H 1.07999 * 122.23207 * 0.02562 * 19 18 16 40 40 H 1.08000 * 120.21935 * 0.24107 * 21 20 19 41 41 H 1.07998 * 119.28835 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5648 -0.6134 1.3136 6 7 4.0532 -1.3035 2.5100 7 6 5.3952 -1.3402 2.7794 8 1 6.0937 -0.8600 2.1101 9 6 5.8580 -1.9946 3.9128 10 7 7.1480 -2.0294 4.1720 11 14 4.6500 -2.8258 5.0700 12 1 4.4450 -4.2335 4.6440 13 1 5.1917 -2.8009 6.4524 14 1 3.3528 -2.1038 5.0336 15 7 2.0183 -0.6905 -1.1963 16 6 2.1469 -0.0182 -2.3572 17 8 1.8530 1.1606 -2.4130 18 6 2.6374 -0.7126 -3.5601 19 6 2.7920 -0.1413 -4.7647 20 6 3.2741 -0.9799 -5.7708 21 6 3.5601 -0.6811 -7.1892 22 6 4.0191 -1.6530 -7.9904 23 7 4.2294 -2.9194 -7.5248 24 1 4.5621 -3.5976 -8.1333 25 6 3.9865 -3.2501 -6.2459 26 8 4.1877 -4.3922 -5.8687 27 6 3.5006 -2.2824 -5.3291 28 16 3.0951 -2.4064 -3.6223 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6055 -0.2619 2.1369 33 1 1.7517 -1.7716 1.2055 34 1 3.9994 -1.0728 0.4258 35 1 3.8532 0.4369 1.3572 36 1 3.4259 -1.7351 3.1109 37 1 7.4713 -2.4871 4.9638 38 1 2.2490 -1.6318 -1.1528 39 1 2.5615 0.8987 -4.9428 40 1 3.4000 0.3137 -7.5782 41 1 4.2263 -1.4299 -9.0265 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753978344.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:47 Heat of formation + Delta-G solvation = -11.001664 kcal Electronic energy + Delta-G solvation = -25196.953646 eV Core-core repulsion = 21396.942621 eV Total energy + Delta-G solvation = -3800.011026 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.34643 -40.07601 -37.90548 -36.84859 -36.23178 -34.56042 -32.34746 -31.57954 -30.89663 -29.99319 -28.32287 -26.04278 -24.26985 -23.82026 -22.27166 -21.33906 -20.80649 -20.73187 -19.44704 -18.55795 -17.56515 -17.18445 -16.99634 -16.15123 -15.98495 -15.96708 -15.24663 -14.81032 -14.59199 -14.43944 -14.14655 -13.89262 -13.76036 -13.39402 -13.20446 -13.08446 -12.62922 -12.58162 -12.39395 -12.37638 -12.09654 -11.56543 -11.31056 -11.22868 -10.95534 -10.77085 -10.65746 -10.56084 -10.25171 -10.15320 -9.82348 -9.59470 -9.34950 -9.19152 -8.89526 -8.14932 -7.24412 -5.76575 -3.12761 -0.28466 0.88439 0.99060 1.44331 1.77619 2.62834 2.85116 2.88999 3.14085 3.36982 3.39277 3.45101 4.01679 4.17477 4.44892 4.49934 4.58825 4.67898 4.76056 5.06796 5.11934 5.18805 5.32061 5.48310 5.51630 5.56419 5.59571 5.62638 5.73042 5.77717 5.87386 5.89530 6.09679 6.15801 6.23210 6.31816 6.49178 6.67301 6.70951 7.26191 7.52270 7.93026 7.99396 8.42137 9.20966 9.93018 10.12478 11.41835 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.012909 B = 0.002750 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2168.455658 B =10179.329324 C =11560.194694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.146 3.854 3 H 0.095 0.905 4 C -0.141 4.141 5 C 0.157 3.843 6 N -0.757 5.757 7 C -0.245 4.245 8 H 0.090 0.910 9 C 0.004 3.996 10 N -0.934 5.934 11 Si 0.886 3.114 12 H -0.284 1.284 13 H -0.291 1.291 14 H -0.277 1.277 15 N -0.712 5.712 16 C 0.589 3.411 17 O -0.522 6.522 18 C -0.216 4.216 19 C -0.067 4.067 20 C -0.004 4.004 21 C -0.174 4.174 22 C 0.107 3.893 23 N -0.618 5.618 24 H 0.420 0.580 25 C 0.569 3.431 26 O -0.536 6.536 27 C -0.275 4.275 28 S 0.260 5.740 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.069 0.931 34 H 0.026 0.974 35 H 0.028 0.972 36 H 0.361 0.639 37 H 0.260 0.740 38 H 0.400 0.600 39 H 0.160 0.840 40 H 0.153 0.847 41 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.250 2.384 -26.810 30.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.042 3.958 3 H 0.113 0.887 4 C -0.179 4.179 5 C 0.029 3.971 6 N -0.402 5.402 7 C -0.375 4.375 8 H 0.107 0.893 9 C -0.192 4.192 10 N -0.582 5.582 11 Si 0.716 3.284 12 H -0.211 1.211 13 H -0.217 1.217 14 H -0.203 1.203 15 N -0.363 5.363 16 C 0.374 3.626 17 O -0.399 6.399 18 C -0.338 4.338 19 C -0.100 4.100 20 C -0.021 4.021 21 C -0.199 4.199 22 C -0.017 4.017 23 N -0.256 5.256 24 H 0.258 0.742 25 C 0.364 3.636 26 O -0.416 6.416 27 C -0.396 4.396 28 S 0.531 5.469 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.101 0.899 33 H 0.088 0.912 34 H 0.044 0.956 35 H 0.046 0.954 36 H 0.193 0.807 37 H 0.070 0.930 38 H 0.235 0.765 39 H 0.178 0.822 40 H 0.170 0.830 41 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -13.131 1.469 -25.306 28.547 hybrid contribution -0.400 -0.159 -0.447 0.620 sum -13.531 1.310 -25.753 29.120 Atomic orbital electron populations 1.22176 0.94991 1.02242 1.02638 1.21059 0.93859 0.97865 0.83018 0.88671 1.22145 0.98228 1.00944 0.96612 1.20628 0.90036 0.96137 0.90268 1.42702 1.05332 1.66306 1.25893 1.19059 0.82142 1.29458 1.06863 0.89268 1.24688 0.95622 1.00673 0.98218 1.69708 1.11739 1.48123 1.28605 0.86523 0.80903 0.79808 0.81125 1.21059 1.21720 1.20338 1.46037 1.66642 1.14050 1.09566 1.17006 0.77740 0.86137 0.81762 1.90816 1.49991 1.14730 1.84399 1.24455 1.10637 0.99723 0.98996 1.20033 0.98430 1.01802 0.89732 1.19296 0.97057 0.91054 0.94688 1.21344 1.07985 1.00248 0.90318 1.21464 0.97046 0.83460 0.99701 1.43013 1.59049 1.11984 1.11507 0.74223 1.15748 0.78898 0.87528 0.81466 1.91019 1.53502 1.20402 1.76716 1.24192 1.16366 0.98542 1.00524 1.84306 1.58775 1.03197 1.00589 0.92134 0.92379 0.91212 0.89896 0.91242 0.95593 0.95437 0.80677 0.93039 0.76488 0.82203 0.82954 0.81460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 9.48 37.15 0.35 -1.34 16 2 C 0.15 1.82 2.57 -67.93 -0.17 1.64 16 3 H 0.10 1.31 7.58 -51.93 -0.39 0.92 16 4 C -0.14 -1.97 4.87 -26.73 -0.13 -2.10 16 5 C 0.16 2.97 6.15 -4.04 -0.02 2.94 16 6 N -0.76 -17.98 5.41 -59.91 -0.32 -18.30 16 7 C -0.25 -7.05 10.47 -15.06 -0.16 -7.21 16 8 H 0.09 2.76 8.06 -52.48 -0.42 2.34 16 9 C 0.00 0.11 5.50 -17.43 -0.10 0.02 16 10 N -0.93 -29.69 13.97 55.49 0.78 -28.92 16 11 Si 0.89 22.15 27.74 -169.99 -4.71 17.44 16 12 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 13 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 14 H -0.28 -6.46 6.52 56.52 0.37 -6.09 16 15 N -0.71 -8.74 4.53 -54.92 -0.25 -8.99 16 16 C 0.59 7.82 7.77 -12.58 -0.10 7.72 16 17 O -0.52 -8.22 16.41 5.27 0.09 -8.13 16 18 C -0.22 -2.52 6.36 -37.31 -0.24 -2.75 16 19 C -0.07 -0.68 9.82 -40.50 -0.40 -1.08 16 20 C 0.00 -0.04 6.08 -105.09 -0.64 -0.68 16 21 C -0.17 -0.99 10.29 -37.16 -0.38 -1.37 16 22 C 0.11 0.44 11.11 -16.92 -0.19 0.25 16 23 N -0.62 -4.08 5.23 -14.85 -0.08 -4.15 16 24 H 0.42 1.69 8.87 -40.82 -0.36 1.33 16 25 C 0.57 6.48 7.71 -15.07 -0.12 6.37 16 26 O -0.54 -8.04 17.89 4.96 0.09 -7.95 16 27 C -0.28 -3.13 6.48 -37.76 -0.24 -3.37 16 28 S 0.26 2.98 22.27 -107.50 -2.39 0.59 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.03 0.50 7.75 -51.93 -0.40 0.10 16 35 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.36 8.25 5.53 -40.82 -0.23 8.02 16 37 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 38 H 0.40 4.49 7.67 -40.82 -0.31 4.17 16 39 H 0.16 1.43 7.98 -52.49 -0.42 1.01 16 40 H 0.15 0.45 8.06 -52.49 -0.42 0.03 16 41 H 0.17 -0.07 8.06 -52.49 -0.42 -0.49 16 LS Contribution 365.55 15.07 5.51 5.51 Total: -1.00 -37.80 365.55 -8.92 -46.72 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -5.09 Total: 7.16 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: -2.53 Total: -0.97 kcal Atomic # 7 Polarization: -60.49 SS G_CDS: 0.13 Total: -60.36 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: 0.18 Total: -16.08 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.71 Total: 17.44 kcal Atomic # 16 Polarization: 2.98 SS G_CDS: -2.39 Total: 0.59 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -37.80 -8.92 -46.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753978344.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.718 kcal (2) G-P(sol) polarization free energy of solvation -37.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds