Wall clock time and date at job start Tue Mar 31 2020 19:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47196 * 2 1 4 4 C 1.52994 * 109.47383 * 120.00422 * 2 1 3 5 5 C 1.52999 * 109.47423 * 184.99986 * 4 2 1 6 6 N 1.46500 * 109.47576 * 179.97438 * 5 4 2 7 7 C 1.36934 * 120.00418 * 179.97438 * 6 5 4 8 8 H 1.08005 * 119.99870 * 0.02562 * 7 6 5 9 9 C 1.38809 * 120.00429 * 180.02562 * 7 6 5 10 10 N 1.31618 * 120.00164 * 180.02562 * 9 7 6 11 11 Si 1.86800 * 119.99815 * 0.02562 * 9 7 6 12 12 H 1.48502 * 109.47274 * 89.99902 * 11 9 7 13 13 H 1.48496 * 109.47253 * 209.99867 * 11 9 7 14 14 H 1.48501 * 109.47341 * 330.00142 * 11 9 7 15 15 N 1.46506 * 109.47171 * 240.00395 * 2 1 3 16 16 C 1.34773 * 119.99968 * 84.99494 * 15 2 1 17 17 O 1.21610 * 120.00228 * 359.73130 * 16 15 2 18 18 C 1.47306 * 119.99935 * 180.02562 * 16 15 2 19 19 C 1.34216 * 124.79198 * 179.44895 * 18 16 15 20 20 C 1.39566 * 115.53149 * 179.85635 * 19 18 16 21 21 C 1.47752 * 129.59657 * 180.16828 * 20 19 18 22 22 C 1.34062 * 119.55930 * 180.26246 * 21 20 19 23 23 N 1.36554 * 121.42274 * 0.02562 * 22 21 20 24 24 H 0.97000 * 119.16407 * 179.97438 * 23 22 21 25 25 C 1.34305 * 121.67966 * 0.02562 * 23 22 21 26 26 O 1.21950 * 119.69432 * 180.02562 * 25 23 22 27 27 C 1.39388 * 112.90253 * 0.41994 * 20 19 18 28 28 S 1.75559 * 124.78899 * 359.75279 * 18 16 15 29 29 H 1.08999 * 109.47547 * 60.00086 * 1 2 3 30 30 H 1.09000 * 109.47196 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46922 * 299.99659 * 1 2 3 32 32 H 1.08999 * 109.47347 * 304.99653 * 4 2 1 33 33 H 1.08999 * 109.47704 * 64.99866 * 4 2 1 34 34 H 1.09000 * 109.47110 * 300.00161 * 5 4 2 35 35 H 1.09004 * 109.47224 * 59.99428 * 5 4 2 36 36 H 0.96999 * 119.99763 * 0.02562 * 6 5 4 37 37 H 0.97006 * 119.99693 * 180.02562 * 10 9 7 38 38 H 0.97004 * 120.00014 * 265.00346 * 15 2 1 39 39 H 1.07999 * 122.23207 * 0.02562 * 19 18 16 40 40 H 1.08000 * 120.21935 * 0.24107 * 21 20 19 41 41 H 1.07998 * 119.28835 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5648 -0.6134 1.3136 6 7 4.0532 -1.3035 2.5100 7 6 5.3952 -1.3402 2.7794 8 1 6.0937 -0.8600 2.1101 9 6 5.8580 -1.9946 3.9128 10 7 7.1480 -2.0294 4.1720 11 14 4.6500 -2.8258 5.0700 12 1 4.4450 -4.2335 4.6440 13 1 5.1917 -2.8009 6.4524 14 1 3.3528 -2.1038 5.0336 15 7 2.0183 -0.6905 -1.1963 16 6 2.1469 -0.0182 -2.3572 17 8 1.8530 1.1606 -2.4130 18 6 2.6374 -0.7126 -3.5601 19 6 2.7920 -0.1413 -4.7647 20 6 3.2741 -0.9799 -5.7708 21 6 3.5601 -0.6811 -7.1892 22 6 4.0191 -1.6530 -7.9904 23 7 4.2294 -2.9194 -7.5248 24 1 4.5621 -3.5976 -8.1333 25 6 3.9865 -3.2501 -6.2459 26 8 4.1877 -4.3922 -5.8687 27 6 3.5006 -2.2824 -5.3291 28 16 3.0951 -2.4064 -3.6223 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6055 -0.2619 2.1369 33 1 1.7517 -1.7716 1.2055 34 1 3.9994 -1.0728 0.4258 35 1 3.8532 0.4369 1.3572 36 1 3.4259 -1.7351 3.1109 37 1 7.4713 -2.4871 4.9638 38 1 2.2490 -1.6318 -1.1528 39 1 2.5615 0.8987 -4.9428 40 1 3.4000 0.3137 -7.5782 41 1 4.2263 -1.4299 -9.0265 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753978344.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:46 Heat of formation + Delta-G solvation = -39.908427 kcal Electronic energy + Delta-G solvation = -25198.207138 eV Core-core repulsion = 21396.942621 eV Total energy + Delta-G solvation = -3801.264517 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.06024 -41.11332 -38.76927 -37.99533 -37.08180 -36.24201 -33.87270 -32.90564 -31.91359 -30.76041 -29.75752 -26.87892 -25.69562 -24.77587 -23.39851 -22.88819 -21.81770 -21.64137 -20.19253 -19.72478 -19.26278 -18.04345 -17.69187 -17.12304 -16.90333 -16.76199 -16.57544 -16.24443 -15.81637 -15.66592 -15.33136 -15.13874 -14.82988 -14.60805 -14.35656 -14.09354 -13.79811 -13.72338 -13.34541 -13.09135 -13.04881 -12.98204 -12.94389 -12.42441 -12.25633 -12.09388 -12.02252 -11.86053 -11.77377 -11.51540 -11.33401 -11.00015 -10.57617 -10.28696 -10.12454 -9.33506 -8.82268 -8.04859 -5.39878 -1.10574 0.06582 0.40287 0.64284 0.97720 1.37404 1.42537 1.49835 1.87233 1.93022 2.03467 2.44836 2.47699 3.26364 3.32130 3.43725 3.54347 3.72073 3.80598 3.97279 4.06011 4.21267 4.22764 4.49243 4.51807 4.56303 4.61912 4.72394 4.80312 4.92020 4.96675 5.00157 5.12113 5.21283 5.22059 5.30345 5.41944 5.72211 5.74370 5.87181 6.18668 6.25372 6.82121 6.90829 7.05664 7.79961 8.01450 9.16834 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.012909 B = 0.002750 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2168.455658 B =10179.329324 C =11560.194694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.149 3.851 3 H 0.080 0.920 4 C -0.126 4.126 5 C 0.153 3.847 6 N -0.757 5.757 7 C -0.241 4.241 8 H 0.049 0.951 9 C -0.066 4.066 10 N -0.985 5.985 11 Si 0.962 3.038 12 H -0.276 1.276 13 H -0.296 1.296 14 H -0.245 1.245 15 N -0.709 5.709 16 C 0.589 3.411 17 O -0.552 6.552 18 C -0.226 4.226 19 C -0.061 4.061 20 C 0.005 3.995 21 C -0.187 4.187 22 C 0.130 3.870 23 N -0.602 5.602 24 H 0.434 0.566 25 C 0.557 3.443 26 O -0.589 6.589 27 C -0.305 4.305 28 S 0.221 5.779 29 H 0.052 0.948 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.097 0.903 33 H 0.085 0.915 34 H 0.021 0.979 35 H 0.015 0.985 36 H 0.369 0.631 37 H 0.259 0.741 38 H 0.405 0.595 39 H 0.174 0.826 40 H 0.188 0.812 41 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.511 2.821 -28.847 32.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.045 3.955 3 H 0.098 0.902 4 C -0.164 4.164 5 C 0.027 3.973 6 N -0.403 5.403 7 C -0.372 4.372 8 H 0.067 0.933 9 C -0.258 4.258 10 N -0.636 5.636 11 Si 0.789 3.211 12 H -0.202 1.202 13 H -0.223 1.223 14 H -0.169 1.169 15 N -0.360 5.360 16 C 0.375 3.625 17 O -0.431 6.431 18 C -0.347 4.347 19 C -0.095 4.095 20 C -0.011 4.011 21 C -0.211 4.211 22 C 0.006 3.994 23 N -0.239 5.239 24 H 0.274 0.726 25 C 0.353 3.647 26 O -0.474 6.474 27 C -0.425 4.425 28 S 0.491 5.509 29 H 0.071 0.929 30 H 0.089 0.911 31 H 0.103 0.897 32 H 0.115 0.885 33 H 0.104 0.896 34 H 0.039 0.961 35 H 0.033 0.967 36 H 0.203 0.797 37 H 0.068 0.932 38 H 0.241 0.759 39 H 0.192 0.808 40 H 0.205 0.795 41 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -15.432 1.922 -27.405 31.510 hybrid contribution 0.407 -0.169 -0.067 0.446 sum -15.025 1.753 -27.472 31.361 Atomic orbital electron populations 1.22100 0.92794 1.03233 1.03034 1.21016 0.95427 0.96744 0.82324 0.90220 1.22019 0.94030 1.02405 0.97951 1.20775 0.93735 0.94620 0.88199 1.42662 1.03492 1.66725 1.27430 1.19013 0.83958 1.28263 1.05992 0.93272 1.25621 0.97723 1.01992 1.00440 1.69909 1.14401 1.49750 1.29506 0.85306 0.79344 0.78862 0.77637 1.20214 1.22259 1.16923 1.46066 1.66233 1.14299 1.09439 1.17196 0.77217 0.85815 0.82305 1.90790 1.51540 1.15842 1.84968 1.24326 1.11729 0.99666 0.99017 1.20311 0.97292 1.02436 0.89415 1.19707 0.95221 0.89766 0.96442 1.21835 1.08470 1.02509 0.88269 1.22423 0.93761 0.81365 1.01804 1.43031 1.57107 1.13621 1.10096 0.72561 1.15914 0.79007 0.86853 0.82913 1.90982 1.56258 1.22186 1.77974 1.24278 1.18424 0.99705 1.00117 1.84291 1.60544 1.03625 1.02423 0.92861 0.91071 0.89685 0.88488 0.89624 0.96145 0.96694 0.79707 0.93243 0.75881 0.80838 0.79476 0.75586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 9.48 71.98 0.68 -2.21 16 2 C 0.15 3.57 2.57 44.99 0.12 3.68 16 3 H 0.08 2.19 7.58 -2.39 -0.02 2.17 16 4 C -0.13 -3.30 4.87 30.59 0.15 -3.15 16 5 C 0.15 5.80 6.15 86.38 0.53 6.33 16 6 N -0.76 -35.56 5.41 -343.45 -1.86 -37.42 16 7 C -0.24 -14.19 10.47 84.03 0.88 -13.31 16 8 H 0.05 3.21 8.06 -2.91 -0.02 3.19 16 9 C -0.07 -3.99 5.50 84.86 0.47 -3.52 16 10 N -0.99 -64.52 13.97 21.65 0.30 -64.21 16 11 Si 0.96 45.46 27.74 68.60 1.90 47.37 16 12 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 13 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 14 H -0.25 -10.18 6.52 99.48 0.65 -9.53 16 15 N -0.71 -17.47 4.53 -445.94 -2.02 -19.49 16 16 C 0.59 15.91 7.77 86.63 0.67 16.58 16 17 O -0.55 -17.54 16.41 -4.06 -0.07 -17.61 16 18 C -0.23 -5.38 6.36 23.74 0.15 -5.23 16 19 C -0.06 -1.21 9.82 21.67 0.21 -0.99 16 20 C 0.01 0.09 6.08 -20.16 -0.12 -0.03 16 21 C -0.19 -1.41 10.29 23.84 0.25 -1.17 16 22 C 0.13 0.46 11.11 83.01 0.92 1.38 16 23 N -0.60 -6.49 5.23 -319.29 -1.67 -8.16 16 24 H 0.43 2.40 8.87 -92.71 -0.82 1.57 16 25 C 0.56 12.66 7.71 85.22 0.66 13.32 16 26 O -0.59 -18.49 17.89 -5.15 -0.09 -18.58 16 27 C -0.30 -7.00 6.48 23.45 0.15 -6.85 16 28 S 0.22 5.37 22.27 -56.49 -1.26 4.12 16 29 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 33 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.02 0.80 7.75 -2.39 -0.02 0.79 16 35 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.37 16.02 5.53 -92.71 -0.51 15.51 16 37 H 0.26 16.05 8.31 -92.70 -0.77 15.28 16 38 H 0.41 9.20 7.67 -92.71 -0.71 8.49 16 39 H 0.17 2.88 7.98 -2.91 -0.02 2.86 16 40 H 0.19 0.13 8.06 -2.91 -0.02 0.11 16 41 H 0.23 -1.79 8.06 -2.91 -0.02 -1.81 16 Total: -1.00 -87.45 365.55 -0.04 -87.49 By element: Atomic # 1 Polarization: 22.66 SS G_CDS: -1.00 Total: 21.66 kcal Atomic # 6 Polarization: -0.88 SS G_CDS: 5.72 Total: 4.84 kcal Atomic # 7 Polarization: -124.04 SS G_CDS: -5.24 Total: -129.28 kcal Atomic # 8 Polarization: -36.03 SS G_CDS: -0.16 Total: -36.19 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 1.90 Total: 47.37 kcal Atomic # 16 Polarization: 5.37 SS G_CDS: -1.26 Total: 4.12 kcal Total: -87.45 -0.04 -87.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753978344.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.583 kcal (2) G-P(sol) polarization free energy of solvation -87.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds