Wall clock time and date at job start Tue Mar 31 2020 19:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47468 * 2 1 4 4 C 1.53001 * 109.47012 * 119.99650 * 2 1 3 5 5 N 1.46499 * 109.47149 * 174.99972 * 4 2 1 6 6 C 1.34780 * 119.99943 * 180.02562 * 5 4 2 7 7 O 1.21606 * 120.00223 * 359.97438 * 6 5 4 8 8 C 1.47299 * 120.00010 * 179.97438 * 6 5 4 9 9 C 1.34217 * 124.79264 * 179.97438 * 8 6 5 10 10 C 1.39570 * 115.53466 * 180.02562 * 9 8 6 11 11 C 1.47749 * 129.59792 * 180.02562 * 10 9 8 12 12 C 1.34058 * 119.55861 * 179.97438 * 11 10 9 13 13 N 1.36557 * 121.42465 * 359.93106 * 12 11 10 14 14 H 0.96998 * 119.16251 * 180.02562 * 13 12 11 15 15 C 1.34304 * 121.67794 * 0.11333 * 13 12 11 16 16 O 1.21955 * 119.69324 * 179.97438 * 15 13 12 17 17 C 1.39393 * 112.89756 * 359.97438 * 10 9 8 18 18 S 1.75564 * 124.79157 * 359.97438 * 8 6 5 19 19 N 1.46498 * 109.47291 * 239.99438 * 2 1 3 20 20 C 1.46493 * 120.00067 * 300.00555 * 19 2 1 21 21 C 1.36940 * 120.00036 * 120.00219 * 19 2 1 22 22 H 1.08002 * 120.00010 * 22.81512 * 21 19 2 23 23 C 1.38812 * 119.99907 * 202.82505 * 21 19 2 24 24 N 1.31618 * 120.00312 * 11.58953 * 23 21 19 25 25 Si 1.86798 * 119.99844 * 191.59764 * 23 21 19 26 26 H 1.48500 * 109.47176 * 359.97438 * 25 23 21 27 27 H 1.48490 * 109.47317 * 119.99701 * 25 23 21 28 28 H 1.48499 * 109.46878 * 239.99900 * 25 23 21 29 29 H 1.08993 * 109.46677 * 60.00187 * 1 2 3 30 30 H 1.08998 * 109.47033 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46648 * 300.00282 * 1 2 3 32 32 H 1.09001 * 109.47185 * 54.99692 * 4 2 1 33 33 H 1.09002 * 109.47271 * 294.99632 * 4 2 1 34 34 H 0.96994 * 120.00153 * 359.97438 * 5 4 2 35 35 H 1.08004 * 122.23089 * 0.02562 * 9 8 6 36 36 H 1.08006 * 120.21773 * 359.71454 * 11 10 9 37 37 H 1.07998 * 119.28838 * 179.97438 * 12 11 10 38 38 H 1.09002 * 109.47484 * 93.84060 * 20 19 2 39 39 H 1.09000 * 109.47072 * 213.84476 * 20 19 2 40 40 H 1.09011 * 109.47247 * 333.84338 * 20 19 2 41 41 H 0.96992 * 120.00195 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5001 -0.8263 1.1907 6 6 4.1730 -1.4291 2.1909 7 8 3.5683 -1.8853 3.1422 8 6 5.6409 -1.5353 2.1316 9 6 6.4055 -2.1134 3.0712 10 6 7.7781 -2.1058 2.8184 11 6 8.8880 -2.6475 3.6293 12 6 10.1485 -2.5284 3.1885 13 7 10.4327 -1.9166 2.0012 14 1 11.3566 -1.8489 1.7137 15 6 9.4658 -1.4047 1.2223 16 8 9.7607 -0.8654 0.1690 17 6 8.1041 -1.4870 1.6126 18 16 6.6376 -0.9236 0.8221 19 7 2.0184 -0.6907 -1.1961 20 6 1.6644 -2.0932 -1.4278 21 6 2.8057 -0.0253 -2.0975 22 1 3.3667 0.8437 -1.7865 23 6 2.8827 -0.4675 -3.4110 24 7 2.0367 -1.3749 -3.8507 25 14 4.1873 0.2250 -4.5547 26 1 5.0074 1.2236 -3.8230 27 1 5.0598 -0.8765 -5.0349 28 1 3.5313 0.8788 -5.7155 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.6053 -1.7197 1.2953 33 1 1.7517 -0.1582 2.1370 34 1 3.9824 -0.4628 0.4317 35 1 5.9865 -2.5551 3.9633 36 1 8.6856 -3.1324 4.5729 37 1 10.9565 -2.9256 3.7849 38 1 0.7756 -2.1445 -2.0567 39 1 2.4916 -2.5992 -1.9258 40 1 1.4627 -2.5796 -0.4733 41 1 2.0907 -1.6841 -4.7684 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755306746.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:36 Heat of formation + Delta-G solvation = 4.332450 kcal Electronic energy + Delta-G solvation = -26111.933593 eV Core-core repulsion = 22312.587505 eV Total energy + Delta-G solvation = -3799.346088 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.16043 -39.56773 -37.65422 -36.80536 -36.11591 -33.90158 -32.16404 -31.39399 -29.97786 -29.33484 -26.69119 -26.04592 -24.92205 -23.71873 -23.02806 -21.45041 -20.39654 -19.56058 -19.06890 -18.07141 -16.97710 -16.86040 -16.79083 -15.80437 -15.72456 -15.54650 -15.40441 -14.72810 -14.51887 -14.15317 -13.96693 -13.62498 -13.03149 -12.95440 -12.82077 -12.69092 -12.33016 -12.22914 -12.17599 -12.01763 -11.45708 -11.11345 -10.95060 -10.84396 -10.76826 -10.47157 -10.41219 -10.28755 -9.93302 -9.92706 -9.80057 -9.61227 -9.09387 -8.69532 -8.59321 -7.94949 -6.83266 -5.77290 -3.25337 -0.04212 1.14960 1.17267 1.72345 1.99084 2.79590 3.15999 3.31622 3.36667 3.38655 3.45617 3.45689 4.20305 4.39021 4.44844 4.69957 4.75747 4.99157 5.30151 5.33543 5.39272 5.50229 5.53529 5.70991 5.83655 5.87800 5.98747 6.04417 6.14804 6.24321 6.40081 6.40265 6.65641 6.67158 6.77060 6.81747 6.96311 7.37221 7.69496 7.69895 7.76525 7.78339 8.32287 8.36387 9.18217 9.80663 10.29632 11.27056 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.011995 B = 0.003921 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2333.799441 B = 7139.302247 C = 9066.245185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.156 3.844 3 H 0.070 0.930 4 C 0.105 3.895 5 N -0.696 5.696 6 C 0.580 3.420 7 O -0.537 6.537 8 C -0.211 4.211 9 C -0.075 4.075 10 C -0.006 4.006 11 C -0.172 4.172 12 C 0.103 3.897 13 N -0.620 5.620 14 H 0.418 0.582 15 C 0.570 3.430 16 O -0.537 6.537 17 C -0.283 4.283 18 S 0.278 5.722 19 N -0.595 5.595 20 C 0.165 3.835 21 C -0.265 4.265 22 H 0.069 0.931 23 C 0.009 3.991 24 N -0.902 5.902 25 Si 0.898 3.102 26 H -0.276 1.276 27 H -0.288 1.288 28 H -0.290 1.290 29 H 0.060 0.940 30 H 0.050 0.950 31 H 0.042 0.958 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.409 0.591 35 H 0.158 0.842 36 H 0.151 0.849 37 H 0.166 0.834 38 H 0.028 0.972 39 H 0.043 0.957 40 H -0.003 1.003 41 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.242 -2.271 16.415 21.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.047 3.953 3 H 0.088 0.912 4 C -0.020 4.020 5 N -0.346 5.346 6 C 0.363 3.637 7 O -0.416 6.416 8 C -0.333 4.333 9 C -0.107 4.107 10 C -0.024 4.024 11 C -0.197 4.197 12 C -0.021 4.021 13 N -0.257 5.257 14 H 0.256 0.744 15 C 0.364 3.636 16 O -0.417 6.417 17 C -0.404 4.404 18 S 0.549 5.451 19 N -0.318 5.318 20 C 0.020 3.980 21 C -0.394 4.394 22 H 0.087 0.913 23 C -0.190 4.190 24 N -0.546 5.546 25 Si 0.728 3.272 26 H -0.201 1.201 27 H -0.215 1.215 28 H -0.217 1.217 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.246 0.754 35 H 0.176 0.824 36 H 0.169 0.831 37 H 0.183 0.817 38 H 0.046 0.954 39 H 0.062 0.938 40 H 0.016 0.984 41 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 12.399 -1.526 14.825 19.386 hybrid contribution 1.527 -0.404 0.115 1.584 sum 13.926 -1.930 14.939 20.514 Atomic orbital electron populations 1.22174 0.97227 1.01449 1.00674 1.20637 0.92786 0.95566 0.86314 0.91219 1.22082 0.78369 1.01800 0.99752 1.45838 1.09021 1.57438 1.22304 1.17053 0.84305 0.78989 0.83313 1.90775 1.68437 1.48757 1.33634 1.24569 0.98690 1.08629 1.01420 1.19984 0.90569 0.99680 1.00514 1.19271 0.93474 0.96691 0.92915 1.21329 0.89294 1.07271 1.01836 1.21414 0.98251 0.95339 0.87060 1.42999 1.11462 1.51853 1.19410 0.74403 1.15771 0.84544 0.79350 0.83917 1.91017 1.83428 1.44536 1.22712 1.24281 0.98877 1.14538 1.02716 1.84712 0.90909 1.52258 1.17182 1.44012 1.58186 1.08099 1.21509 1.20738 0.99925 0.83286 0.94028 1.19233 1.19213 1.11534 0.89420 0.91281 1.25011 0.98263 0.99128 0.96608 1.70072 1.35975 1.32868 1.15697 0.86288 0.81310 0.78548 0.81088 1.20054 1.21476 1.21687 0.92094 0.93096 0.93915 0.91564 0.91915 0.75389 0.82410 0.83121 0.81657 0.95351 0.93812 0.98418 0.93731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.68 9.19 37.16 0.34 -2.34 16 2 C 0.16 2.95 2.87 -67.93 -0.19 2.75 16 3 H 0.07 1.30 7.86 -51.93 -0.41 0.89 16 4 C 0.11 1.83 4.93 -4.04 -0.02 1.81 16 5 N -0.70 -12.20 5.38 -61.42 -0.33 -12.53 16 6 C 0.58 9.99 7.80 -12.57 -0.10 9.89 16 7 O -0.54 -10.31 16.75 5.27 0.09 -10.22 16 8 C -0.21 -3.16 6.36 -37.32 -0.24 -3.40 16 9 C -0.07 -0.96 9.82 -40.50 -0.40 -1.35 16 10 C -0.01 -0.08 6.08 -105.08 -0.64 -0.71 16 11 C -0.17 -1.29 10.29 -37.17 -0.38 -1.67 16 12 C 0.10 0.59 11.11 -16.92 -0.19 0.40 16 13 N -0.62 -5.16 5.23 -14.85 -0.08 -5.24 16 14 H 0.42 2.35 8.87 -40.82 -0.36 1.99 16 15 C 0.57 7.70 7.71 -15.07 -0.12 7.58 16 16 O -0.54 -9.22 17.89 4.96 0.09 -9.13 16 17 C -0.28 -3.92 6.48 -37.75 -0.24 -4.17 16 18 S 0.28 4.21 22.27 -107.50 -2.39 1.82 16 19 N -0.59 -13.75 2.29 -173.48 -0.40 -14.15 16 20 C 0.16 3.92 8.00 59.84 0.48 4.40 16 21 C -0.26 -6.76 9.32 -15.06 -0.14 -6.90 16 22 H 0.07 1.71 7.82 -52.49 -0.41 1.30 16 23 C 0.01 0.25 5.12 -17.43 -0.09 0.16 16 24 N -0.90 -25.51 10.63 55.49 0.59 -24.92 16 25 Si 0.90 21.42 29.57 -169.99 -5.03 16.39 16 26 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 27 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 28 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 29 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.05 0.89 7.67 -51.93 -0.40 0.49 16 31 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 1.22 6.86 -51.93 -0.36 0.86 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.41 7.39 6.96 -40.82 -0.28 7.11 16 35 H 0.16 1.79 7.98 -52.48 -0.42 1.37 16 36 H 0.15 0.69 8.06 -52.48 -0.42 0.27 16 37 H 0.17 0.17 8.06 -52.49 -0.42 -0.25 16 38 H 0.03 0.73 7.43 -51.93 -0.39 0.35 16 39 H 0.04 1.14 7.20 -51.93 -0.37 0.76 16 40 H 0.00 -0.06 6.53 -51.92 -0.34 -0.40 16 41 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 360.45 15.07 5.43 5.43 Total: -1.00 -33.53 360.45 -8.94 -42.47 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -4.99 Total: 3.66 kcal Atomic # 6 Polarization: 8.36 SS G_CDS: -1.93 Total: 6.43 kcal Atomic # 7 Polarization: -56.62 SS G_CDS: -0.22 Total: -56.84 kcal Atomic # 8 Polarization: -19.54 SS G_CDS: 0.18 Total: -19.36 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.03 Total: 16.39 kcal Atomic # 16 Polarization: 4.21 SS G_CDS: -2.39 Total: 1.82 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.53 -8.94 -42.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755306746.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.799 kcal (2) G-P(sol) polarization free energy of solvation -33.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds