Wall clock time and date at job start Tue Mar 31 2020 19:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47468 * 2 1 4 4 C 1.53001 * 109.47012 * 119.99650 * 2 1 3 5 5 N 1.46499 * 109.47149 * 174.99972 * 4 2 1 6 6 C 1.34780 * 119.99943 * 180.02562 * 5 4 2 7 7 O 1.21606 * 120.00223 * 359.97438 * 6 5 4 8 8 C 1.47299 * 120.00010 * 179.97438 * 6 5 4 9 9 C 1.34217 * 124.79264 * 179.97438 * 8 6 5 10 10 C 1.39570 * 115.53466 * 180.02562 * 9 8 6 11 11 C 1.47749 * 129.59792 * 180.02562 * 10 9 8 12 12 C 1.34058 * 119.55861 * 179.97438 * 11 10 9 13 13 N 1.36557 * 121.42465 * 359.93106 * 12 11 10 14 14 H 0.96998 * 119.16251 * 180.02562 * 13 12 11 15 15 C 1.34304 * 121.67794 * 0.11333 * 13 12 11 16 16 O 1.21955 * 119.69324 * 179.97438 * 15 13 12 17 17 C 1.39393 * 112.89756 * 359.97438 * 10 9 8 18 18 S 1.75564 * 124.79157 * 359.97438 * 8 6 5 19 19 N 1.46498 * 109.47291 * 239.99438 * 2 1 3 20 20 C 1.46493 * 120.00067 * 300.00555 * 19 2 1 21 21 C 1.36940 * 120.00036 * 120.00219 * 19 2 1 22 22 H 1.08002 * 120.00010 * 22.81512 * 21 19 2 23 23 C 1.38812 * 119.99907 * 202.82505 * 21 19 2 24 24 N 1.31618 * 120.00312 * 11.58953 * 23 21 19 25 25 Si 1.86798 * 119.99844 * 191.59764 * 23 21 19 26 26 H 1.48500 * 109.47176 * 359.97438 * 25 23 21 27 27 H 1.48490 * 109.47317 * 119.99701 * 25 23 21 28 28 H 1.48499 * 109.46878 * 239.99900 * 25 23 21 29 29 H 1.08993 * 109.46677 * 60.00187 * 1 2 3 30 30 H 1.08998 * 109.47033 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46648 * 300.00282 * 1 2 3 32 32 H 1.09001 * 109.47185 * 54.99692 * 4 2 1 33 33 H 1.09002 * 109.47271 * 294.99632 * 4 2 1 34 34 H 0.96994 * 120.00153 * 359.97438 * 5 4 2 35 35 H 1.08004 * 122.23089 * 0.02562 * 9 8 6 36 36 H 1.08006 * 120.21773 * 359.71454 * 11 10 9 37 37 H 1.07998 * 119.28838 * 179.97438 * 12 11 10 38 38 H 1.09002 * 109.47484 * 93.84060 * 20 19 2 39 39 H 1.09000 * 109.47072 * 213.84476 * 20 19 2 40 40 H 1.09011 * 109.47247 * 333.84338 * 20 19 2 41 41 H 0.96992 * 120.00195 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5001 -0.8263 1.1907 6 6 4.1730 -1.4291 2.1909 7 8 3.5683 -1.8853 3.1422 8 6 5.6409 -1.5353 2.1316 9 6 6.4055 -2.1134 3.0712 10 6 7.7781 -2.1058 2.8184 11 6 8.8880 -2.6475 3.6293 12 6 10.1485 -2.5284 3.1885 13 7 10.4327 -1.9166 2.0012 14 1 11.3566 -1.8489 1.7137 15 6 9.4658 -1.4047 1.2223 16 8 9.7607 -0.8654 0.1690 17 6 8.1041 -1.4870 1.6126 18 16 6.6376 -0.9236 0.8221 19 7 2.0184 -0.6907 -1.1961 20 6 1.6644 -2.0932 -1.4278 21 6 2.8057 -0.0253 -2.0975 22 1 3.3667 0.8437 -1.7865 23 6 2.8827 -0.4675 -3.4110 24 7 2.0367 -1.3749 -3.8507 25 14 4.1873 0.2250 -4.5547 26 1 5.0074 1.2236 -3.8230 27 1 5.0598 -0.8765 -5.0349 28 1 3.5313 0.8788 -5.7155 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.6053 -1.7197 1.2953 33 1 1.7517 -0.1582 2.1370 34 1 3.9824 -0.4628 0.4317 35 1 5.9865 -2.5551 3.9633 36 1 8.6856 -3.1324 4.5729 37 1 10.9565 -2.9256 3.7849 38 1 0.7756 -2.1445 -2.0567 39 1 2.4916 -2.5992 -1.9258 40 1 1.4627 -2.5796 -0.4733 41 1 2.0907 -1.6841 -4.7684 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755306746.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:36 Heat of formation + Delta-G solvation = -19.316124 kcal Electronic energy + Delta-G solvation = -26112.959072 eV Core-core repulsion = 22312.587505 eV Total energy + Delta-G solvation = -3800.371568 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.04346 -40.92133 -38.79699 -38.31161 -37.07718 -35.52593 -33.85198 -32.34760 -31.20604 -30.77528 -28.04223 -27.94053 -26.02517 -24.98440 -24.50750 -22.52207 -21.58809 -21.03024 -20.02183 -19.21856 -18.84470 -17.91585 -17.68381 -17.20930 -16.88674 -16.77757 -16.73453 -16.29647 -15.73070 -15.45108 -15.33496 -14.69572 -14.60794 -14.48461 -14.08736 -13.82670 -13.76413 -13.50025 -13.08763 -13.05276 -13.02816 -12.88679 -12.69476 -12.56619 -12.30334 -12.09210 -12.00086 -11.82043 -11.53015 -11.49764 -11.31778 -10.65018 -10.55416 -10.22362 -10.03456 -8.81993 -8.79821 -7.82215 -5.29745 -1.07334 0.09777 0.42587 0.70268 0.99759 1.43601 1.48501 1.55071 1.92829 2.03200 2.06432 2.46695 2.49190 3.33820 3.40881 3.56228 3.63043 3.76235 3.82985 4.00618 4.24386 4.33150 4.50882 4.57259 4.64122 4.69570 4.75325 4.90689 4.96032 5.01463 5.04208 5.22414 5.23451 5.27555 5.40103 5.49973 5.66583 5.74534 5.76729 5.88400 6.33269 6.37673 6.83922 6.96391 7.16386 7.86917 8.31338 9.21291 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.011995 B = 0.003921 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2333.799441 B = 7139.302247 C = 9066.245185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.154 3.846 3 H 0.074 0.926 4 C 0.114 3.886 5 N -0.701 5.701 6 C 0.582 3.418 7 O -0.559 6.559 8 C -0.224 4.224 9 C -0.059 4.059 10 C 0.007 3.993 11 C -0.184 4.184 12 C 0.130 3.870 13 N -0.601 5.601 14 H 0.434 0.566 15 C 0.557 3.443 16 O -0.590 6.590 17 C -0.305 4.305 18 S 0.206 5.794 19 N -0.604 5.604 20 C 0.185 3.815 21 C -0.256 4.256 22 H 0.077 0.923 23 C -0.044 4.044 24 N -0.934 5.934 25 Si 0.950 3.050 26 H -0.265 1.265 27 H -0.298 1.298 28 H -0.293 1.293 29 H 0.041 0.959 30 H 0.046 0.954 31 H 0.079 0.921 32 H 0.057 0.943 33 H 0.085 0.915 34 H 0.406 0.594 35 H 0.178 0.822 36 H 0.191 0.809 37 H 0.230 0.770 38 H 0.003 0.997 39 H 0.013 0.987 40 H 0.020 0.980 41 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.472 -2.830 20.009 25.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.046 3.954 3 H 0.092 0.908 4 C -0.011 4.011 5 N -0.350 5.350 6 C 0.368 3.632 7 O -0.440 6.440 8 C -0.345 4.345 9 C -0.092 4.092 10 C -0.010 4.010 11 C -0.209 4.209 12 C 0.007 3.993 13 N -0.238 5.238 14 H 0.275 0.725 15 C 0.353 3.647 16 O -0.475 6.475 17 C -0.426 4.426 18 S 0.477 5.523 19 N -0.328 5.328 20 C 0.040 3.960 21 C -0.386 4.386 22 H 0.095 0.905 23 C -0.239 4.239 24 N -0.581 5.581 25 Si 0.780 3.220 26 H -0.189 1.189 27 H -0.225 1.225 28 H -0.221 1.221 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.098 0.902 32 H 0.075 0.925 33 H 0.103 0.897 34 H 0.242 0.758 35 H 0.195 0.805 36 H 0.208 0.792 37 H 0.246 0.754 38 H 0.021 0.979 39 H 0.031 0.969 40 H 0.039 0.961 41 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 14.656 -2.072 18.479 23.676 hybrid contribution 0.980 -0.298 -0.757 1.274 sum 15.636 -2.369 17.721 23.752 Atomic orbital electron populations 1.22051 0.95540 1.01471 1.01556 1.20831 0.93998 0.95512 0.85019 0.90808 1.21961 0.78363 1.01298 0.99503 1.45901 1.09102 1.57637 1.22397 1.17257 0.85157 0.78158 0.82656 1.90751 1.69196 1.49781 1.34294 1.24317 0.97469 1.10544 1.02159 1.20315 0.91034 0.97793 1.00093 1.19728 0.94094 0.94947 0.92240 1.21842 0.88299 1.07778 1.02935 1.22448 0.99602 0.92012 0.85268 1.43008 1.11382 1.49899 1.19468 0.72545 1.15903 0.85188 0.79619 0.83962 1.90983 1.84111 1.47363 1.25077 1.24300 0.98389 1.16226 1.03652 1.84817 0.93324 1.54928 1.19214 1.44141 1.58341 1.08039 1.22272 1.20384 0.97460 0.83934 0.94236 1.19561 1.18572 1.10892 0.89553 0.90543 1.25613 1.00103 1.00105 0.98129 1.70213 1.37737 1.34675 1.15512 0.85443 0.79356 0.77760 0.79444 1.18873 1.22521 1.22063 0.93969 0.93524 0.90192 0.92456 0.89684 0.75798 0.80502 0.79213 0.75354 0.97881 0.96858 0.96111 0.94508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.88 9.19 71.98 0.66 -4.22 16 2 C 0.15 5.70 2.87 44.99 0.13 5.83 16 3 H 0.07 2.69 7.86 -2.39 -0.02 2.67 16 4 C 0.11 3.84 4.93 86.38 0.43 4.26 16 5 N -0.70 -24.67 5.38 -466.50 -2.51 -27.18 16 6 C 0.58 20.02 7.80 86.63 0.68 20.69 16 7 O -0.56 -21.03 16.75 -4.05 -0.07 -21.10 16 8 C -0.22 -6.72 6.36 23.74 0.15 -6.57 16 9 C -0.06 -1.41 9.82 21.67 0.21 -1.19 16 10 C 0.01 0.14 6.08 -20.16 -0.12 0.02 16 11 C -0.18 -1.80 10.29 23.83 0.25 -1.55 16 12 C 0.13 0.72 11.11 83.00 0.92 1.64 16 13 N -0.60 -7.98 5.23 -319.28 -1.67 -9.65 16 14 H 0.43 3.35 8.87 -92.71 -0.82 2.52 16 15 C 0.56 14.69 7.71 85.22 0.66 15.35 16 16 O -0.59 -20.92 17.89 -5.17 -0.09 -21.01 16 17 C -0.30 -8.38 6.48 23.45 0.15 -8.23 16 18 S 0.21 6.58 22.27 -56.49 -1.26 5.32 16 19 N -0.60 -28.33 2.29 -702.78 -1.61 -29.93 16 20 C 0.18 9.05 8.00 127.77 1.02 10.07 16 21 C -0.26 -13.27 9.32 84.03 0.78 -12.48 16 22 H 0.08 3.80 7.82 -2.91 -0.02 3.78 16 23 C -0.04 -2.42 5.12 84.86 0.43 -1.98 16 24 N -0.93 -54.82 10.63 21.65 0.23 -54.59 16 25 Si 0.95 45.36 29.57 68.60 2.03 47.39 16 26 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 27 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 28 H -0.29 -14.05 7.11 99.48 0.71 -13.35 16 29 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.05 1.58 7.67 -2.39 -0.02 1.56 16 31 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 32 H 0.06 2.05 6.86 -2.39 -0.02 2.03 16 33 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 34 H 0.41 15.05 6.96 -92.71 -0.65 14.40 16 35 H 0.18 3.51 7.98 -2.91 -0.02 3.49 16 36 H 0.19 0.44 8.06 -2.91 -0.02 0.42 16 37 H 0.23 -1.49 8.06 -2.91 -0.02 -1.51 16 38 H 0.00 0.16 7.43 -2.39 -0.02 0.14 16 39 H 0.01 0.69 7.20 -2.39 -0.02 0.68 16 40 H 0.02 0.89 6.53 -2.38 -0.02 0.88 16 41 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 Total: -1.00 -78.09 360.45 1.03 -77.06 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -0.37 Total: 12.07 kcal Atomic # 6 Polarization: 15.27 SS G_CDS: 6.35 Total: 21.63 kcal Atomic # 7 Polarization: -115.79 SS G_CDS: -5.56 Total: -121.35 kcal Atomic # 8 Polarization: -41.95 SS G_CDS: -0.16 Total: -42.11 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Atomic # 16 Polarization: 6.58 SS G_CDS: -1.26 Total: 5.32 kcal Total: -78.09 1.03 -77.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755306746.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.739 kcal (2) G-P(sol) polarization free energy of solvation -78.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds