Wall clock time and date at job start Tue Mar 31 2020 18:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30862 * 125.88969 * 2 1 4 4 C 1.33693 * 109.77116 * 180.02562 * 3 2 1 5 5 S 1.76196 * 125.61955 * 179.97438 * 4 3 2 6 6 C 1.81402 * 103.00091 * 179.97438 * 5 4 3 7 7 C 1.53000 * 109.47133 * 179.97438 * 6 5 4 8 8 H 1.09003 * 109.47240 * 59.99986 * 7 6 5 9 9 O 1.42900 * 109.47257 * 300.00002 * 7 6 5 10 10 C 1.53006 * 109.47010 * 179.97438 * 7 6 5 11 11 O 1.42900 * 109.46860 * 185.00094 * 10 7 6 12 12 C 1.35677 * 116.99772 * 180.02562 * 11 10 7 13 13 C 1.39308 * 119.81926 * 359.71955 * 12 11 10 14 14 C 1.36434 * 120.18827 * 179.76265 * 13 12 11 15 15 C 1.40837 * 119.80809 * 0.51202 * 14 13 12 16 16 C 1.41221 * 120.17550 * 179.71930 * 15 14 13 17 17 H 1.07997 * 120.00111 * 24.57679 * 16 15 14 18 18 C 1.39890 * 119.99341 * 204.57429 * 16 15 14 19 19 N 1.30881 * 120.00726 * 17.93806 * 18 16 15 20 20 Si 1.86807 * 119.99709 * 197.93574 * 18 16 15 21 21 H 1.48493 * 109.47218 * 90.00319 * 20 18 16 22 22 H 1.48507 * 109.47108 * 210.00359 * 20 18 16 23 23 H 1.48499 * 109.47036 * 330.00022 * 20 18 16 24 24 C 1.40827 * 119.64058 * 359.74599 * 15 14 13 25 25 C 1.36433 * 119.81716 * 359.97438 * 24 15 14 26 26 N 1.31254 * 108.76510 * 359.97438 * 4 3 2 27 27 N 1.34354 * 125.88413 * 180.02562 * 2 1 3 28 28 H 0.97000 * 126.75749 * 359.97438 * 27 2 1 29 29 H 1.08997 * 109.47507 * 89.96623 * 1 2 3 30 30 H 1.08995 * 109.47479 * 209.97531 * 1 2 3 31 31 H 1.09003 * 109.46526 * 329.96379 * 1 2 3 32 32 H 1.08999 * 109.47092 * 300.00078 * 6 5 4 33 33 H 1.08997 * 109.47107 * 60.00326 * 6 5 4 34 34 H 0.96695 * 113.99839 * 300.00047 * 9 7 6 35 35 H 1.08993 * 109.47063 * 304.99817 * 10 7 6 36 36 H 1.08999 * 109.47030 * 65.00489 * 10 7 6 37 37 H 1.08008 * 119.90803 * 0.02699 * 13 12 11 38 38 H 1.08000 * 120.10151 * 180.25774 * 14 13 12 39 39 H 0.96998 * 120.00504 * 180.02562 * 19 18 16 40 40 H 1.08005 * 120.09170 * 179.97438 * 24 15 14 41 41 H 1.07998 * 119.91352 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0602 0.0000 4 6 3.5585 0.6890 -0.0006 5 16 4.9420 1.7801 -0.0014 6 6 6.3569 0.6450 -0.0011 7 6 7.6574 1.4510 -0.0025 8 1 7.6960 2.0800 0.8870 9 8 7.7068 2.2736 -1.1700 10 6 8.8509 0.4936 -0.0016 11 8 10.0623 1.2426 0.1146 12 6 11.2223 0.5391 0.1302 13 6 11.1908 -0.8508 0.0408 14 6 12.3530 -1.5654 0.0508 15 6 13.5863 -0.8946 0.1628 16 6 14.7937 -1.6270 0.1800 17 1 14.8377 -2.6063 -0.2733 18 6 15.9325 -1.0839 0.7841 19 7 15.8155 -0.0872 1.6243 20 14 17.6205 -1.7812 0.3915 21 1 18.1965 -1.0586 -0.7708 22 1 18.5108 -1.6149 1.5685 23 1 17.4961 -3.2245 0.0650 24 6 13.6090 0.5102 0.2582 25 6 12.4381 1.2103 0.2409 26 7 3.6191 -0.6221 -0.0004 27 7 2.2945 -1.0885 -0.0005 28 1 2.0051 -2.0144 -0.0006 29 1 -0.3634 0.0006 -1.0276 30 1 -0.3634 -0.8901 0.5134 31 1 -0.3632 0.8897 0.5144 32 1 6.3190 0.0173 0.8892 33 1 6.3187 0.0164 -0.8908 34 1 7.6765 1.7795 -2.0006 35 1 8.7656 -0.1924 0.8411 36 1 8.8623 -0.0736 -0.9323 37 1 10.2439 -1.3638 -0.0411 38 1 12.3272 -2.6425 -0.0228 39 1 16.6053 0.2896 2.0429 40 1 14.5507 1.0320 0.3448 41 1 12.4536 2.2877 0.3144 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001771719928.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:36 Heat of formation + Delta-G solvation = 11.876924 kcal Electronic energy + Delta-G solvation = -24316.137771 eV Core-core repulsion = 20517.118835 eV Total energy + Delta-G solvation = -3799.018935 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.44094 -39.08873 -37.54742 -36.05781 -33.39397 -33.32772 -32.82551 -31.69244 -29.79557 -29.05946 -28.66166 -26.79699 -24.64904 -23.60431 -22.34983 -21.42267 -20.71458 -20.62501 -18.61617 -17.41937 -17.30949 -16.74350 -16.50370 -16.26186 -16.16017 -15.27421 -15.11869 -14.73042 -14.45962 -14.03665 -13.90616 -13.64414 -13.57597 -13.19975 -12.87562 -12.74795 -12.37216 -12.28699 -12.15977 -11.83101 -11.50276 -11.24203 -11.14615 -11.04344 -10.90937 -10.80081 -10.65388 -10.36953 -10.17496 -10.16023 -9.98330 -9.83241 -9.34520 -9.03321 -7.96145 -7.65244 -7.04606 -6.72894 -4.26434 0.80137 1.06427 1.76621 2.32484 2.44338 2.77070 2.94336 3.08547 3.11713 3.20930 3.74960 3.79338 3.94965 4.24340 4.28234 4.60905 4.66605 4.75133 4.80624 4.87739 5.02277 5.16186 5.16839 5.33591 5.45313 5.57210 5.65856 5.76226 5.87762 6.04552 6.21669 6.55920 6.71425 6.96795 7.10211 7.17678 7.44391 7.48062 7.53804 7.56167 7.77802 7.99916 8.19677 8.43243 8.64135 8.89244 8.97636 10.21561 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.034578 B = 0.001706 C = 0.001646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.575450 B =16409.179029 C =17005.598936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.292 3.708 3 N -0.518 5.518 4 C 0.205 3.795 5 S 0.062 5.938 6 C -0.154 4.154 7 C 0.128 3.872 8 H 0.118 0.882 9 O -0.542 6.542 10 C 0.045 3.955 11 O -0.316 6.316 12 C -0.010 4.010 13 C -0.168 4.168 14 C -0.199 4.199 15 C 0.088 3.912 16 C -0.464 4.464 17 H 0.076 0.924 18 C 0.075 3.925 19 N -0.798 5.798 20 Si 0.908 3.092 21 H -0.268 1.268 22 H -0.278 1.278 23 H -0.263 1.263 24 C -0.133 4.133 25 C -0.117 4.117 26 N -0.320 5.320 27 N -0.479 5.479 28 H 0.441 0.559 29 H 0.094 0.906 30 H 0.085 0.915 31 H 0.101 0.899 32 H 0.105 0.895 33 H 0.097 0.903 34 H 0.376 0.624 35 H 0.061 0.939 36 H 0.056 0.944 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.280 0.720 40 H 0.126 0.874 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.984 -1.020 -2.799 26.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.011 3.989 3 N -0.249 5.249 4 C -0.185 4.185 5 S 0.290 5.710 6 C -0.303 4.303 7 C 0.067 3.933 8 H 0.136 0.864 9 O -0.347 6.347 10 C -0.033 4.033 11 O -0.231 6.231 12 C -0.053 4.053 13 C -0.187 4.187 14 C -0.218 4.218 15 C 0.086 3.914 16 C -0.494 4.494 17 H 0.095 0.905 18 C -0.142 4.142 19 N -0.424 5.424 20 Si 0.732 3.268 21 H -0.193 1.193 22 H -0.204 1.204 23 H -0.187 1.187 24 C -0.153 4.153 25 C -0.136 4.136 26 N -0.154 5.154 27 N -0.199 5.199 28 H 0.287 0.713 29 H 0.113 0.887 30 H 0.103 0.897 31 H 0.119 0.881 32 H 0.123 0.877 33 H 0.116 0.884 34 H 0.223 0.777 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.110 0.890 38 H 0.112 0.888 39 H 0.091 0.909 40 H 0.144 0.856 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -25.272 0.929 -2.172 25.382 hybrid contribution 0.219 -3.340 -0.397 3.370 sum -25.053 -2.411 -2.569 25.299 Atomic orbital electron populations 1.20437 0.83200 1.05271 1.04826 1.24522 0.96748 0.82601 0.94980 1.70581 0.99512 1.28996 1.25775 1.26342 0.97915 0.93125 1.01113 1.86040 0.89004 1.03957 1.92026 1.24452 0.96076 1.02028 1.07773 1.21574 0.88522 0.92094 0.91113 0.86386 1.86669 1.96395 1.36205 1.15389 1.23017 0.84885 0.93989 1.01453 1.85874 1.11749 1.34732 1.90782 1.18602 0.84453 0.90041 1.12215 1.20394 0.97681 0.92570 1.08032 1.20549 0.92109 0.97604 1.11579 1.17608 0.92108 0.91953 0.89762 1.19472 0.93817 1.03363 1.32730 0.90544 1.25878 1.01256 0.94300 0.92751 1.69830 1.31818 1.21186 1.19568 0.86325 0.81221 0.80358 0.78861 1.19299 1.20375 1.18737 1.20984 0.96261 0.94219 1.03807 1.19845 0.90255 0.98195 1.05332 1.78399 0.97168 1.10493 1.29366 1.47852 1.04166 1.10066 1.57793 0.71321 0.88712 0.89651 0.88064 0.87669 0.88410 0.77674 0.92054 0.92562 0.88952 0.88785 0.90885 0.85635 0.88348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.22 10.51 36.00 0.38 0.16 16 2 C 0.29 2.35 8.23 -155.74 -1.28 1.07 16 3 N -0.52 -6.18 11.21 -10.96 -0.12 -6.30 16 4 C 0.20 2.57 8.28 -90.96 -0.75 1.82 16 5 S 0.06 0.72 21.81 -107.50 -2.34 -1.62 16 6 C -0.15 -1.60 5.25 37.16 0.20 -1.40 16 7 C 0.13 1.57 3.30 -26.73 -0.09 1.48 16 8 H 0.12 1.50 8.14 -51.93 -0.42 1.08 16 9 O -0.54 -7.00 12.90 -40.06 -0.52 -7.52 16 10 C 0.05 0.67 4.37 37.16 0.16 0.83 16 11 O -0.32 -6.35 10.09 -23.56 -0.24 -6.59 16 12 C -0.01 -0.23 6.71 -38.78 -0.26 -0.49 16 13 C -0.17 -3.76 8.96 -39.83 -0.36 -4.12 16 14 C -0.20 -4.87 9.74 -39.25 -0.38 -5.25 16 15 C 0.09 2.35 5.57 -106.80 -0.60 1.76 16 16 C -0.46 -12.32 9.04 -37.83 -0.34 -12.66 16 17 H 0.08 1.95 7.91 -52.49 -0.41 1.54 16 18 C 0.08 1.89 5.13 -17.34 -0.09 1.80 16 19 N -0.80 -20.69 10.96 55.54 0.61 -20.08 16 20 Si 0.91 18.70 29.60 -169.99 -5.03 13.67 16 21 H -0.27 -5.46 7.11 56.52 0.40 -5.05 16 22 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 23 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 24 C -0.13 -3.49 8.64 -39.25 -0.34 -3.83 16 25 C -0.12 -2.86 9.92 -39.83 -0.40 -3.25 16 26 N -0.32 -3.76 12.36 30.13 0.37 -3.39 16 27 N -0.48 -3.83 7.43 32.61 0.24 -3.59 16 28 H 0.44 1.79 8.96 -182.34 -1.63 0.15 16 29 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 30 H 0.08 0.03 8.14 -51.93 -0.42 -0.39 16 31 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.10 1.05 8.14 -51.92 -0.42 0.63 16 33 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.38 3.59 9.05 45.56 0.41 4.00 16 35 H 0.06 0.88 7.64 -51.93 -0.40 0.48 16 36 H 0.06 0.78 7.66 -51.93 -0.40 0.38 16 37 H 0.09 1.77 6.27 -52.48 -0.33 1.44 16 38 H 0.09 2.16 8.06 -52.49 -0.42 1.73 16 39 H 0.28 6.61 8.30 -40.82 -0.34 6.27 16 40 H 0.13 3.36 6.16 -52.48 -0.32 3.04 16 41 H 0.10 2.22 8.06 -52.49 -0.42 1.80 16 LS Contribution 368.23 15.07 5.55 5.55 Total: -1.00 -33.69 368.23 -11.23 -44.92 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -5.60 Total: 7.03 kcal Atomic # 6 Polarization: -17.93 SS G_CDS: -4.15 Total: -22.08 kcal Atomic # 7 Polarization: -34.46 SS G_CDS: 1.10 Total: -33.36 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: -0.75 Total: -14.11 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -5.03 Total: 13.67 kcal Atomic # 16 Polarization: 0.72 SS G_CDS: -2.34 Total: -1.62 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.69 -11.23 -44.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771719928.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.796 kcal (2) G-P(sol) polarization free energy of solvation -33.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds