Wall clock time and date at job start Tue Mar 31 2020 18:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30862 * 125.88969 * 2 1 4 4 C 1.33693 * 109.77116 * 180.02562 * 3 2 1 5 5 S 1.76196 * 125.61955 * 179.97438 * 4 3 2 6 6 C 1.81402 * 103.00091 * 179.97438 * 5 4 3 7 7 C 1.53000 * 109.47133 * 179.97438 * 6 5 4 8 8 H 1.09003 * 109.47240 * 59.99986 * 7 6 5 9 9 O 1.42900 * 109.47257 * 300.00002 * 7 6 5 10 10 C 1.53006 * 109.47010 * 179.97438 * 7 6 5 11 11 O 1.42900 * 109.46860 * 185.00094 * 10 7 6 12 12 C 1.35677 * 116.99772 * 180.02562 * 11 10 7 13 13 C 1.39308 * 119.81926 * 359.71955 * 12 11 10 14 14 C 1.36434 * 120.18827 * 179.76265 * 13 12 11 15 15 C 1.40837 * 119.80809 * 0.51202 * 14 13 12 16 16 C 1.41221 * 120.17550 * 179.71930 * 15 14 13 17 17 H 1.07997 * 120.00111 * 24.57679 * 16 15 14 18 18 C 1.39890 * 119.99341 * 204.57429 * 16 15 14 19 19 N 1.30881 * 120.00726 * 17.93806 * 18 16 15 20 20 Si 1.86807 * 119.99709 * 197.93574 * 18 16 15 21 21 H 1.48493 * 109.47218 * 90.00319 * 20 18 16 22 22 H 1.48507 * 109.47108 * 210.00359 * 20 18 16 23 23 H 1.48499 * 109.47036 * 330.00022 * 20 18 16 24 24 C 1.40827 * 119.64058 * 359.74599 * 15 14 13 25 25 C 1.36433 * 119.81716 * 359.97438 * 24 15 14 26 26 N 1.31254 * 108.76510 * 359.97438 * 4 3 2 27 27 N 1.34354 * 125.88413 * 180.02562 * 2 1 3 28 28 H 0.97000 * 126.75749 * 359.97438 * 27 2 1 29 29 H 1.08997 * 109.47507 * 89.96623 * 1 2 3 30 30 H 1.08995 * 109.47479 * 209.97531 * 1 2 3 31 31 H 1.09003 * 109.46526 * 329.96379 * 1 2 3 32 32 H 1.08999 * 109.47092 * 300.00078 * 6 5 4 33 33 H 1.08997 * 109.47107 * 60.00326 * 6 5 4 34 34 H 0.96695 * 113.99839 * 300.00047 * 9 7 6 35 35 H 1.08993 * 109.47063 * 304.99817 * 10 7 6 36 36 H 1.08999 * 109.47030 * 65.00489 * 10 7 6 37 37 H 1.08008 * 119.90803 * 0.02699 * 13 12 11 38 38 H 1.08000 * 120.10151 * 180.25774 * 14 13 12 39 39 H 0.96998 * 120.00504 * 180.02562 * 19 18 16 40 40 H 1.08005 * 120.09170 * 179.97438 * 24 15 14 41 41 H 1.07998 * 119.91352 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0602 0.0000 4 6 3.5585 0.6890 -0.0006 5 16 4.9420 1.7801 -0.0014 6 6 6.3569 0.6450 -0.0011 7 6 7.6574 1.4510 -0.0025 8 1 7.6960 2.0800 0.8870 9 8 7.7068 2.2736 -1.1700 10 6 8.8509 0.4936 -0.0016 11 8 10.0623 1.2426 0.1146 12 6 11.2223 0.5391 0.1302 13 6 11.1908 -0.8508 0.0408 14 6 12.3530 -1.5654 0.0508 15 6 13.5863 -0.8946 0.1628 16 6 14.7937 -1.6270 0.1800 17 1 14.8377 -2.6063 -0.2733 18 6 15.9325 -1.0839 0.7841 19 7 15.8155 -0.0872 1.6243 20 14 17.6205 -1.7812 0.3915 21 1 18.1965 -1.0586 -0.7708 22 1 18.5108 -1.6149 1.5685 23 1 17.4961 -3.2245 0.0650 24 6 13.6090 0.5102 0.2582 25 6 12.4381 1.2103 0.2409 26 7 3.6191 -0.6221 -0.0004 27 7 2.2945 -1.0885 -0.0005 28 1 2.0051 -2.0144 -0.0006 29 1 -0.3634 0.0006 -1.0276 30 1 -0.3634 -0.8901 0.5134 31 1 -0.3632 0.8897 0.5144 32 1 6.3190 0.0173 0.8892 33 1 6.3187 0.0164 -0.8908 34 1 7.6765 1.7795 -2.0006 35 1 8.7656 -0.1924 0.8411 36 1 8.8623 -0.0736 -0.9323 37 1 10.2439 -1.3638 -0.0411 38 1 12.3272 -2.6425 -0.0228 39 1 16.6053 0.2896 2.0429 40 1 14.5507 1.0320 0.3448 41 1 12.4536 2.2877 0.3144 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001771719928.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:35 Heat of formation + Delta-G solvation = -10.661715 kcal Electronic energy + Delta-G solvation = -24317.115119 eV Core-core repulsion = 20517.118835 eV Total energy + Delta-G solvation = -3799.996284 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.15215 -40.65846 -38.91206 -37.61536 -35.18303 -33.99727 -33.52506 -32.74308 -31.61059 -30.91153 -29.18399 -28.03397 -26.44544 -24.41826 -23.55797 -22.53839 -22.30937 -22.02732 -19.36508 -19.25848 -18.72817 -17.89499 -17.54354 -17.27630 -17.00712 -16.92879 -16.19075 -15.76245 -15.72453 -15.61116 -15.23992 -14.80161 -14.17974 -14.07005 -14.01970 -13.93352 -13.72003 -13.70214 -13.48235 -13.07957 -12.88221 -12.80664 -12.62890 -12.42367 -12.28334 -11.75735 -11.74204 -11.64428 -11.59490 -11.33636 -11.17869 -11.07474 -10.89143 -10.87998 -9.55804 -8.92788 -8.81790 -8.59374 -6.22812 -0.04344 0.36321 0.95085 0.97742 1.03044 1.40017 1.52984 1.53061 1.57575 1.85397 2.22932 2.47475 2.72824 3.27551 3.33871 3.66148 3.70289 3.74795 3.78719 3.88367 4.13696 4.28555 4.35157 4.44166 4.49598 4.54294 4.67397 4.77096 4.82347 4.89996 5.00675 5.06924 5.10259 5.22029 5.28446 5.58488 5.64738 5.88337 6.06046 6.08598 6.26634 6.56223 6.71932 6.78187 6.80891 6.95288 7.09752 8.37158 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.034578 B = 0.001706 C = 0.001646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.575450 B =16409.179029 C =17005.598936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.300 3.700 3 N -0.558 5.558 4 C 0.189 3.811 5 S 0.044 5.956 6 C -0.137 4.137 7 C 0.140 3.860 8 H 0.111 0.889 9 O -0.557 6.557 10 C 0.036 3.964 11 O -0.328 6.328 12 C 0.001 3.999 13 C -0.165 4.165 14 C -0.208 4.208 15 C 0.054 3.946 16 C -0.500 4.500 17 H 0.076 0.924 18 C 0.034 3.966 19 N -0.831 5.831 20 Si 0.982 3.018 21 H -0.263 1.263 22 H -0.269 1.269 23 H -0.258 1.258 24 C -0.152 4.152 25 C -0.133 4.133 26 N -0.344 5.344 27 N -0.470 5.470 28 H 0.458 0.542 29 H 0.112 0.888 30 H 0.116 0.884 31 H 0.102 0.898 32 H 0.111 0.889 33 H 0.108 0.892 34 H 0.390 0.610 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.130 0.870 38 H 0.105 0.895 39 H 0.287 0.713 40 H 0.109 0.891 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.990 -2.350 -3.208 28.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.020 3.980 3 N -0.290 5.290 4 C -0.201 4.201 5 S 0.272 5.728 6 C -0.287 4.287 7 C 0.079 3.921 8 H 0.129 0.871 9 O -0.365 6.365 10 C -0.041 4.041 11 O -0.244 6.244 12 C -0.042 4.042 13 C -0.184 4.184 14 C -0.227 4.227 15 C 0.052 3.948 16 C -0.530 4.530 17 H 0.094 0.906 18 C -0.180 4.180 19 N -0.458 5.458 20 Si 0.803 3.197 21 H -0.188 1.188 22 H -0.194 1.194 23 H -0.182 1.182 24 C -0.172 4.172 25 C -0.152 4.152 26 N -0.179 5.179 27 N -0.191 5.191 28 H 0.307 0.693 29 H 0.131 0.869 30 H 0.135 0.865 31 H 0.121 0.879 32 H 0.129 0.871 33 H 0.127 0.873 34 H 0.240 0.760 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.148 0.852 38 H 0.123 0.877 39 H 0.098 0.902 40 H 0.127 0.873 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -27.324 -0.430 -2.590 27.450 hybrid contribution 0.552 -2.910 -0.282 2.975 sum -26.772 -3.340 -2.872 27.132 Atomic orbital electron populations 1.20717 0.79473 1.06867 1.06385 1.25397 0.98413 0.81611 0.92543 1.70558 0.99738 1.31061 1.27670 1.26375 0.98316 0.93437 1.01933 1.86013 0.89734 1.04791 1.92296 1.24272 0.94415 1.01402 1.08592 1.21393 0.88306 0.91547 0.90868 0.87075 1.86643 1.96398 1.37116 1.16304 1.23385 0.83333 0.94720 1.02690 1.85862 1.12345 1.35724 1.90420 1.18657 0.85171 0.90362 1.10056 1.20706 0.98597 0.92449 1.06606 1.20796 0.92192 0.98406 1.11346 1.17968 0.93364 0.92449 0.91050 1.19721 0.95043 1.03899 1.34290 0.90587 1.26733 1.04862 0.94496 0.91941 1.69888 1.33233 1.22391 1.20290 0.85205 0.76035 0.79640 0.78815 1.18791 1.19398 1.18202 1.20897 0.96378 0.94395 1.05520 1.20012 0.90698 0.98823 1.05628 1.78273 0.99369 1.10250 1.29975 1.47806 1.03056 1.11126 1.57130 0.69315 0.86947 0.86548 0.87924 0.87089 0.87334 0.76025 0.90943 0.90947 0.85231 0.87665 0.90208 0.87275 0.87439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.20 10.51 71.23 0.75 0.55 16 2 C 0.30 4.27 8.23 138.24 1.14 5.41 16 3 N -0.56 -12.86 11.21 -188.59 -2.11 -14.97 16 4 C 0.19 4.62 8.28 180.47 1.49 6.11 16 5 S 0.04 1.00 21.81 -56.49 -1.23 -0.23 16 6 C -0.14 -2.63 5.25 71.98 0.38 -2.25 16 7 C 0.14 3.21 3.30 30.60 0.10 3.31 16 8 H 0.11 2.72 8.14 -2.39 -0.02 2.70 16 9 O -0.56 -13.63 12.90 -144.37 -1.86 -15.49 16 10 C 0.04 0.99 4.37 71.98 0.31 1.31 16 11 O -0.33 -12.70 10.09 -85.33 -0.86 -13.56 16 12 C 0.00 0.06 6.71 22.79 0.15 0.22 16 13 C -0.17 -7.14 8.96 22.11 0.20 -6.94 16 14 C -0.21 -10.14 9.74 22.48 0.22 -9.93 16 15 C 0.05 2.94 5.57 -21.28 -0.12 2.83 16 16 C -0.50 -27.19 9.04 23.40 0.21 -26.98 16 17 H 0.08 3.97 7.91 -2.91 -0.02 3.95 16 18 C 0.03 1.71 5.13 85.23 0.44 2.15 16 19 N -0.83 -44.21 10.96 21.82 0.24 -43.97 16 20 Si 0.98 38.62 29.60 68.60 2.03 40.65 16 21 H -0.26 -10.06 7.11 99.48 0.71 -9.36 16 22 H -0.27 -10.09 7.11 99.48 0.71 -9.38 16 23 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 24 C -0.15 -8.24 8.64 22.48 0.19 -8.04 16 25 C -0.13 -6.55 9.92 22.11 0.22 -6.33 16 26 N -0.34 -7.64 12.36 -58.58 -0.72 -8.36 16 27 N -0.47 -6.60 7.43 -50.73 -0.38 -6.98 16 28 H 0.46 2.62 8.96 -213.10 -1.91 0.71 16 29 H 0.11 -0.02 8.14 -2.39 -0.02 -0.04 16 30 H 0.12 -0.39 8.14 -2.39 -0.02 -0.40 16 31 H 0.10 0.32 8.14 -2.39 -0.02 0.30 16 32 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.39 6.78 9.05 -74.06 -0.67 6.11 16 35 H 0.07 1.86 7.64 -2.39 -0.02 1.84 16 36 H 0.07 1.78 7.66 -2.39 -0.02 1.76 16 37 H 0.13 4.55 6.27 -2.91 -0.02 4.53 16 38 H 0.11 4.77 8.06 -2.91 -0.02 4.75 16 39 H 0.29 13.83 8.30 -92.71 -0.77 13.06 16 40 H 0.11 6.14 6.16 -2.91 -0.02 6.12 16 41 H 0.11 4.95 8.06 -2.91 -0.02 4.92 16 Total: -1.00 -74.52 368.23 -0.70 -75.22 By element: Atomic # 1 Polarization: 27.76 SS G_CDS: -1.49 Total: 26.27 kcal Atomic # 6 Polarization: -44.27 SS G_CDS: 5.69 Total: -38.58 kcal Atomic # 7 Polarization: -71.30 SS G_CDS: -2.98 Total: -74.28 kcal Atomic # 8 Polarization: -26.33 SS G_CDS: -2.72 Total: -29.05 kcal Atomic # 14 Polarization: 38.62 SS G_CDS: 2.03 Total: 40.65 kcal Atomic # 16 Polarization: 1.00 SS G_CDS: -1.23 Total: -0.23 kcal Total: -74.52 -0.70 -75.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771719928.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.555 kcal (2) G-P(sol) polarization free energy of solvation -74.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds