Wall clock time and date at job start Tue Mar 31 2020 18:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30872 * 125.88741 * 2 1 4 4 C 1.33697 * 109.76799 * 180.02562 * 3 2 1 5 5 S 1.76198 * 125.61532 * 179.97438 * 4 3 2 6 6 C 1.81405 * 102.99845 * 180.02562 * 5 4 3 7 7 C 1.52994 * 109.46902 * 180.02562 * 6 5 4 8 8 H 1.09004 * 109.46995 * 304.99965 * 7 6 5 9 9 O 1.42902 * 109.47223 * 65.00211 * 7 6 5 10 10 C 1.53002 * 109.46845 * 185.00292 * 7 6 5 11 11 O 1.42904 * 109.46921 * 174.99802 * 10 7 6 12 12 C 1.35679 * 116.99768 * 179.97438 * 11 10 7 13 13 C 1.39312 * 119.81855 * 359.72856 * 12 11 10 14 14 C 1.36437 * 120.18458 * 179.76320 * 13 12 11 15 15 C 1.40836 * 119.80930 * 0.50442 * 14 13 12 16 16 C 1.41209 * 120.17654 * 179.72268 * 15 14 13 17 17 H 1.08004 * 120.00374 * 24.57583 * 16 15 14 18 18 C 1.39889 * 120.00220 * 204.57710 * 16 15 14 19 19 N 1.30882 * 120.00167 * 17.92959 * 18 16 15 20 20 Si 1.86801 * 120.00327 * 197.93495 * 18 16 15 21 21 H 1.48500 * 109.47102 * 89.99329 * 20 18 16 22 22 H 1.48497 * 109.47454 * 209.99567 * 20 18 16 23 23 H 1.48496 * 109.47101 * 329.99662 * 20 18 16 24 24 C 1.40828 * 119.64253 * 359.74905 * 15 14 13 25 25 C 1.36438 * 119.81142 * 359.97438 * 24 15 14 26 26 N 1.31256 * 108.76223 * 0.22890 * 4 3 2 27 27 N 1.34349 * 125.88685 * 180.02562 * 2 1 3 28 28 H 0.97004 * 126.75619 * 0.02562 * 27 2 1 29 29 H 1.08997 * 109.46747 * 89.97269 * 1 2 3 30 30 H 1.08990 * 109.47082 * 209.97990 * 1 2 3 31 31 H 1.09004 * 109.46888 * 329.97897 * 1 2 3 32 32 H 1.09000 * 109.46698 * 60.00042 * 6 5 4 33 33 H 1.08996 * 109.47045 * 300.00192 * 6 5 4 34 34 H 0.96694 * 113.99885 * 59.99900 * 9 7 6 35 35 H 1.08995 * 109.46962 * 294.99698 * 10 7 6 36 36 H 1.08999 * 109.47380 * 54.99916 * 10 7 6 37 37 H 1.08004 * 119.90477 * 0.02562 * 13 12 11 38 38 H 1.08001 * 120.09564 * 180.25585 * 14 13 12 39 39 H 0.97000 * 120.00577 * 180.02562 * 19 18 16 40 40 H 1.07997 * 120.09442 * 179.97438 * 24 15 14 41 41 H 1.08004 * 119.90633 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0603 0.0000 4 6 3.5586 0.6891 -0.0006 5 16 4.9420 1.7803 -0.0014 6 6 6.3570 0.6452 -0.0027 7 6 7.6574 1.4513 -0.0029 8 1 7.6552 2.1441 -0.8444 9 8 7.7629 2.1855 1.2185 10 6 8.8479 0.4986 -0.1298 11 8 10.0538 1.2563 -0.2471 12 6 11.2107 0.5579 -0.3684 13 6 11.1823 -0.8350 -0.3683 14 6 12.3406 -1.5448 -0.4947 15 6 13.5685 -0.8654 -0.6148 16 6 14.7726 -1.5923 -0.7401 17 1 14.7581 -2.5974 -1.1350 18 6 15.9844 -1.0106 -0.3526 19 7 15.9862 0.0354 0.4341 20 14 17.6000 -1.7265 -0.9582 21 1 17.9817 -1.0751 -2.2370 22 1 18.6587 -1.4863 0.0550 23 1 17.4440 -3.1874 -1.1743 24 6 13.5889 0.5427 -0.6086 25 6 12.4210 1.2375 -0.4871 26 7 3.6191 -0.6221 -0.0059 27 7 2.2946 -1.0885 -0.0005 28 1 2.0052 -2.0143 -0.0012 29 1 -0.3633 0.0005 -1.0277 30 1 -0.3633 -0.8901 0.5135 31 1 -0.3633 0.8898 0.5142 32 1 6.3182 0.0172 -0.8928 33 1 6.3196 0.0169 0.8871 34 1 7.7707 1.6315 2.0110 35 1 8.9018 -0.1354 0.7552 36 1 8.7223 -0.1240 -1.0156 37 1 10.2402 -1.3543 -0.2722 38 1 12.3165 -2.6245 -0.4985 39 1 16.8264 0.4390 0.7025 40 1 14.5263 1.0711 -0.6999 41 1 12.4349 2.3174 -0.4819 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001771719930.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:38 Heat of formation + Delta-G solvation = -10.947830 kcal Electronic energy + Delta-G solvation = -24315.373174 eV Core-core repulsion = 20515.364483 eV Total energy + Delta-G solvation = -3800.008691 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.15357 -40.65861 -38.91353 -37.61625 -35.18287 -33.99807 -33.52670 -32.74869 -31.61067 -30.91153 -29.18524 -28.03423 -26.44535 -24.42419 -23.55841 -22.53830 -22.31081 -22.02960 -19.36710 -19.25805 -18.72870 -17.89206 -17.55903 -17.27656 -17.00549 -16.93047 -16.19431 -15.76231 -15.72327 -15.60147 -15.23991 -14.80324 -14.21982 -14.06881 -13.99729 -13.93646 -13.73928 -13.63846 -13.53466 -13.06881 -12.87768 -12.80468 -12.65716 -12.44062 -12.25461 -11.76022 -11.72085 -11.68435 -11.58625 -11.33429 -11.18040 -11.07700 -10.89249 -10.88034 -9.55735 -8.92764 -8.82417 -8.59335 -6.22785 -0.04606 0.36159 0.95141 0.97174 1.03062 1.40049 1.53001 1.53080 1.57365 1.85199 2.22957 2.47148 2.72933 3.27460 3.32876 3.65943 3.70212 3.75524 3.79762 3.86744 4.13380 4.28743 4.35194 4.44132 4.48719 4.54157 4.67336 4.76985 4.82122 4.90065 5.00484 5.06941 5.10222 5.22085 5.28476 5.58533 5.64756 5.88375 6.06066 6.08490 6.26685 6.56233 6.71296 6.78011 6.80889 6.95316 7.09790 8.37198 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.035154 B = 0.001707 C = 0.001643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.312377 B =16402.821104 C =17036.788176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.300 3.700 3 N -0.558 5.558 4 C 0.190 3.810 5 S 0.041 5.959 6 C -0.136 4.136 7 C 0.140 3.860 8 H 0.112 0.888 9 O -0.559 6.559 10 C 0.036 3.964 11 O -0.328 6.328 12 C 0.001 3.999 13 C -0.165 4.165 14 C -0.208 4.208 15 C 0.054 3.946 16 C -0.500 4.500 17 H 0.076 0.924 18 C 0.034 3.966 19 N -0.831 5.831 20 Si 0.982 3.018 21 H -0.263 1.263 22 H -0.269 1.269 23 H -0.258 1.258 24 C -0.152 4.152 25 C -0.133 4.133 26 N -0.343 5.343 27 N -0.470 5.470 28 H 0.458 0.542 29 H 0.112 0.888 30 H 0.116 0.884 31 H 0.102 0.898 32 H 0.112 0.888 33 H 0.108 0.892 34 H 0.390 0.610 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.130 0.870 38 H 0.105 0.895 39 H 0.287 0.713 40 H 0.109 0.891 41 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.235 -2.632 -0.016 28.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.020 3.980 3 N -0.290 5.290 4 C -0.200 4.200 5 S 0.268 5.732 6 C -0.286 4.286 7 C 0.079 3.921 8 H 0.130 0.870 9 O -0.366 6.366 10 C -0.041 4.041 11 O -0.244 6.244 12 C -0.043 4.043 13 C -0.184 4.184 14 C -0.227 4.227 15 C 0.052 3.948 16 C -0.529 4.529 17 H 0.094 0.906 18 C -0.180 4.180 19 N -0.458 5.458 20 Si 0.803 3.197 21 H -0.188 1.188 22 H -0.194 1.194 23 H -0.182 1.182 24 C -0.172 4.172 25 C -0.152 4.152 26 N -0.178 5.178 27 N -0.191 5.191 28 H 0.307 0.693 29 H 0.130 0.870 30 H 0.135 0.865 31 H 0.121 0.879 32 H 0.130 0.870 33 H 0.126 0.874 34 H 0.240 0.760 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.148 0.852 38 H 0.123 0.877 39 H 0.098 0.902 40 H 0.127 0.873 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -27.566 -0.671 -0.276 27.576 hybrid contribution 0.565 -2.918 0.237 2.982 sum -27.001 -3.589 -0.039 27.239 Atomic orbital electron populations 1.20719 0.79466 1.06881 1.06375 1.25400 0.98414 0.81608 0.92538 1.70565 0.99735 1.31064 1.27674 1.26344 0.98270 0.93419 1.01948 1.85990 0.89850 1.05016 1.92311 1.24266 0.94370 1.01329 1.08603 1.21393 0.88294 0.93024 0.89416 0.86991 1.86642 1.96208 1.37875 1.15847 1.23387 0.83476 0.94582 1.02682 1.85863 1.12913 1.35505 1.90080 1.18655 0.85294 0.90324 1.09976 1.20707 0.98666 0.92417 1.06563 1.20797 0.92732 0.98458 1.10751 1.17965 0.93435 0.92519 0.90910 1.19719 0.91926 1.01712 1.39594 0.90593 1.26732 1.04494 0.94643 0.92163 1.69890 1.30486 1.20406 1.25009 0.85203 0.75982 0.79621 0.78883 1.18801 1.19390 1.18205 1.20897 0.96268 0.94556 1.05474 1.20012 0.90739 0.98766 1.05650 1.78271 0.99372 1.10231 1.29959 1.47804 1.03049 1.11129 1.57113 0.69303 0.86976 0.86522 0.87914 0.86984 0.87355 0.76044 0.91173 0.90674 0.85222 0.87662 0.90206 0.87276 0.87443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.20 10.51 71.24 0.75 0.55 16 2 C 0.30 4.26 8.23 138.24 1.14 5.40 16 3 N -0.56 -12.85 11.21 -188.57 -2.11 -14.97 16 4 C 0.19 4.64 8.28 180.46 1.49 6.13 16 5 S 0.04 0.92 21.95 -56.49 -1.24 -0.31 16 6 C -0.14 -2.61 5.22 71.98 0.38 -2.23 16 7 C 0.14 3.21 3.24 30.59 0.10 3.31 16 8 H 0.11 2.72 8.14 -2.38 -0.02 2.70 16 9 O -0.56 -13.90 13.06 -144.35 -1.88 -15.78 16 10 C 0.04 1.00 4.37 71.98 0.31 1.31 16 11 O -0.33 -12.70 10.09 -85.34 -0.86 -13.57 16 12 C 0.00 0.06 6.71 22.79 0.15 0.22 16 13 C -0.16 -7.13 8.96 22.11 0.20 -6.93 16 14 C -0.21 -10.14 9.74 22.48 0.22 -9.92 16 15 C 0.05 2.95 5.57 -21.28 -0.12 2.83 16 16 C -0.50 -27.18 9.04 23.40 0.21 -26.97 16 17 H 0.08 3.97 7.91 -2.91 -0.02 3.94 16 18 C 0.03 1.72 5.13 85.23 0.44 2.15 16 19 N -0.83 -44.21 10.96 21.82 0.24 -43.97 16 20 Si 0.98 38.62 29.60 68.60 2.03 40.65 16 21 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 22 H -0.27 -10.08 7.11 99.48 0.71 -9.37 16 23 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 24 C -0.15 -8.24 8.64 22.48 0.19 -8.05 16 25 C -0.13 -6.55 9.92 22.11 0.22 -6.33 16 26 N -0.34 -7.61 12.36 -58.58 -0.72 -8.34 16 27 N -0.47 -6.57 7.43 -50.73 -0.38 -6.94 16 28 H 0.46 2.59 8.96 -213.10 -1.91 0.68 16 29 H 0.11 -0.01 8.14 -2.39 -0.02 -0.03 16 30 H 0.12 -0.40 8.14 -2.39 -0.02 -0.42 16 31 H 0.10 0.32 8.14 -2.39 -0.02 0.30 16 32 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.39 6.99 9.04 -74.06 -0.67 6.32 16 35 H 0.07 1.76 7.63 -2.39 -0.02 1.74 16 36 H 0.08 1.88 7.66 -2.39 -0.02 1.87 16 37 H 0.13 4.55 6.27 -2.91 -0.02 4.53 16 38 H 0.11 4.77 8.06 -2.91 -0.02 4.75 16 39 H 0.29 13.83 8.30 -92.71 -0.77 13.06 16 40 H 0.11 6.14 6.16 -2.91 -0.02 6.12 16 41 H 0.11 4.95 8.06 -2.91 -0.02 4.92 16 Total: -1.00 -74.59 368.44 -0.74 -75.32 By element: Atomic # 1 Polarization: 27.93 SS G_CDS: -1.49 Total: 26.45 kcal Atomic # 6 Polarization: -44.23 SS G_CDS: 5.68 Total: -38.54 kcal Atomic # 7 Polarization: -71.24 SS G_CDS: -2.98 Total: -74.21 kcal Atomic # 8 Polarization: -26.60 SS G_CDS: -2.75 Total: -29.35 kcal Atomic # 14 Polarization: 38.62 SS G_CDS: 2.03 Total: 40.65 kcal Atomic # 16 Polarization: 0.92 SS G_CDS: -1.24 Total: -0.31 kcal Total: -74.59 -0.74 -75.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771719930.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.376 kcal (2) G-P(sol) polarization free energy of solvation -74.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds