Wall clock time and date at job start Tue Mar 31 2020 19:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47644 * 2 1 4 4 C 1.53006 * 109.47054 * 240.00387 * 2 1 3 5 5 N 1.46504 * 109.46883 * 185.00191 * 4 2 1 6 6 C 1.46499 * 119.99661 * 269.99401 * 5 4 2 7 7 C 1.34774 * 120.00336 * 90.00128 * 5 4 2 8 8 O 1.21288 * 119.99888 * 359.97438 * 7 5 4 9 9 C 1.50698 * 120.00423 * 179.97438 * 7 5 4 10 10 S 1.80994 * 109.47246 * 179.97438 * 9 7 5 11 11 C 1.76207 * 99.99793 * 180.02562 * 10 9 7 12 12 H 1.07992 * 119.99991 * 359.97438 * 11 10 9 13 13 C 1.38795 * 119.99905 * 180.02562 * 11 10 9 14 14 N 1.31634 * 119.99963 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00150 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.46716 * 59.99888 * 15 13 11 17 17 H 1.48496 * 109.47210 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.47230 * 300.00233 * 15 13 11 19 19 N 1.46496 * 109.47330 * 120.00365 * 2 1 3 20 20 C 1.31909 * 120.00002 * 239.99617 * 19 2 1 21 21 C 1.46884 * 120.57126 * 179.71206 * 20 19 2 22 22 C 1.34952 * 118.30346 * 179.78384 * 21 20 19 23 23 N 1.36652 * 119.29070 * 0.48362 * 22 21 20 24 24 H 0.97000 * 119.43563 * 179.74685 * 23 22 21 25 25 C 1.36217 * 121.13409 * 359.75777 * 23 22 21 26 26 C 1.43204 * 119.06860 * 179.97438 * 25 23 22 27 27 N 5.71319 * 120.87176 * 27.76657 * 2 1 3 28 28 N 1.31038 * 121.86132 * 359.97438 * 25 23 22 29 29 H 1.09001 * 109.47018 * 59.99757 * 1 2 3 30 30 H 1.08995 * 109.47070 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47069 * 299.99745 * 1 2 3 32 32 H 1.09001 * 109.47002 * 304.99688 * 4 2 1 33 33 H 1.08993 * 109.46955 * 65.00125 * 4 2 1 34 34 H 1.09003 * 109.47033 * 90.00622 * 6 5 4 35 35 H 1.09000 * 109.47241 * 210.00440 * 6 5 4 36 36 H 1.09000 * 109.47127 * 330.00198 * 6 5 4 37 37 H 1.09004 * 109.46777 * 300.00065 * 9 7 5 38 38 H 1.08998 * 109.46770 * 59.99671 * 9 7 5 39 39 H 0.97004 * 119.99594 * 180.02562 * 14 13 11 40 40 H 1.07996 * 120.84767 * 0.04059 * 21 20 19 41 41 H 1.08000 * 120.35584 * 180.22474 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5001 -0.8264 -1.1906 6 6 4.3343 0.2341 -1.7613 7 6 4.0758 -1.8987 -0.6117 8 8 3.3851 -2.7764 -0.1389 9 6 5.5777 -2.0071 -0.5518 10 16 6.0387 -3.5470 0.2800 11 6 7.7947 -3.4174 0.2125 12 1 8.2552 -2.5577 -0.2514 13 6 8.5859 -4.4206 0.7545 14 7 8.0246 -5.4687 1.3195 15 14 10.4475 -4.2836 0.6823 16 1 10.8817 -3.0575 1.3990 17 1 11.0569 -5.4748 1.3263 18 1 10.8838 -4.2090 -0.7351 19 7 2.0184 -0.6907 1.1961 20 6 2.7768 -0.0497 2.0643 21 6 3.2682 -0.7281 3.2709 22 6 4.0445 -0.0301 4.1261 23 7 4.3374 1.2757 3.8496 24 1 4.8922 1.7804 4.4647 25 6 3.8634 1.8809 2.7251 26 6 4.1973 3.2516 2.4792 27 7 4.4615 4.3391 2.2845 28 7 3.1105 1.2443 1.8619 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6054 -1.7198 -1.2953 33 1 1.7517 -0.1582 -2.1370 34 1 4.5400 0.9848 -0.9983 35 1 5.2734 -0.1924 -2.1139 36 1 3.8102 0.6989 -2.5964 37 1 5.9827 -2.0050 -1.5638 38 1 5.9812 -1.1600 0.0028 39 1 8.5777 -6.1697 1.6986 40 1 3.0180 -1.7603 3.4666 41 1 4.4269 -0.4974 5.0216 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115630086.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:09 Heat of formation + Delta-G solvation = 81.051540 kcal Electronic energy + Delta-G solvation = -26441.892919 eV Core-core repulsion = 22678.166371 eV Total energy + Delta-G solvation = -3763.726548 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.116 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.03203 -39.27144 -37.25464 -36.58885 -34.98468 -33.63610 -32.65803 -32.40579 -29.86789 -29.12902 -27.03522 -25.87131 -25.56569 -25.01150 -23.65990 -20.86433 -19.98081 -18.99957 -18.34915 -17.60046 -17.56701 -16.49171 -16.04024 -15.80683 -15.43722 -15.23998 -14.79008 -14.39902 -13.96486 -13.80296 -13.70348 -13.61924 -13.42397 -13.30388 -12.98029 -12.78386 -12.67034 -12.40209 -12.17425 -12.02929 -11.81706 -11.68920 -11.34336 -11.12385 -11.03323 -11.00873 -10.74970 -10.44173 -10.30956 -9.77386 -9.06606 -9.03929 -8.97469 -8.31699 -8.15674 -7.52465 -6.44334 -6.19207 -3.88207 0.31683 1.35914 1.64892 2.23366 2.49827 3.09915 3.22498 3.26867 3.27313 3.31162 3.36595 3.68467 3.76513 4.17976 4.23270 4.42458 4.90441 5.00293 5.11724 5.15226 5.17387 5.25443 5.46479 5.49987 5.55821 5.59245 5.66847 5.69618 5.74656 5.83851 5.93580 6.02080 6.11799 6.16798 6.21331 6.33918 6.40823 6.54981 6.75348 6.91412 7.58081 7.60984 7.80839 8.15515 8.37165 8.86905 9.25837 10.87909 Molecular weight = 335.12amu Principal moments of inertia in cm(-1) A = 0.010511 B = 0.004004 C = 0.003425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2663.112056 B = 6990.579139 C = 8173.211275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.048 3.952 3 H 0.067 0.933 4 C 0.132 3.868 5 N -0.623 5.623 6 C 0.085 3.915 7 C 0.531 3.469 8 O -0.493 6.493 9 C -0.147 4.147 10 S -0.055 6.055 11 C -0.535 4.535 12 H 0.069 0.931 13 C 0.075 3.925 14 N -0.867 5.867 15 Si 0.915 3.085 16 H -0.275 1.275 17 H -0.283 1.283 18 H -0.274 1.274 19 N -0.476 5.476 20 C 0.333 3.667 21 C -0.162 4.162 22 C 0.099 3.901 23 N -0.623 5.623 24 H 0.421 0.579 25 C 0.487 3.513 26 C 0.260 3.740 27 N -0.344 5.344 28 N -0.514 5.514 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.050 0.950 32 H 0.086 0.914 33 H 0.073 0.927 34 H 0.047 0.953 35 H 0.070 0.930 36 H 0.064 0.936 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.268 0.732 40 H 0.161 0.839 41 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.777 16.776 4.032 19.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.064 4.064 3 H 0.085 0.915 4 C 0.008 3.992 5 N -0.360 5.360 6 C -0.059 4.059 7 C 0.318 3.682 8 O -0.365 6.365 9 C -0.298 4.298 10 S 0.172 5.828 11 C -0.683 4.683 12 H 0.087 0.913 13 C -0.134 4.134 14 N -0.503 5.503 15 Si 0.741 3.259 16 H -0.201 1.201 17 H -0.208 1.208 18 H -0.200 1.200 19 N -0.195 5.195 20 C 0.057 3.943 21 C -0.192 4.192 22 C -0.024 4.024 23 N -0.246 5.246 24 H 0.257 0.743 25 C 0.208 3.792 26 C -0.060 4.060 27 N -0.022 5.022 28 N -0.243 5.243 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.105 0.895 33 H 0.091 0.909 34 H 0.066 0.934 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.101 0.899 38 H 0.097 0.903 39 H 0.078 0.922 40 H 0.179 0.821 41 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -11.363 16.101 3.385 19.995 hybrid contribution 2.824 1.434 0.135 3.170 sum -8.539 17.535 3.520 19.818 Atomic orbital electron populations 1.21671 0.93878 1.02410 1.01073 1.21999 0.95160 0.97828 0.91458 0.91523 1.21448 0.80203 1.01996 0.95528 1.47748 1.06007 1.21739 1.60470 1.21679 0.95667 0.90677 0.97853 1.20121 0.89742 0.81062 0.77319 1.90707 1.64133 1.38218 1.43420 1.23531 0.94496 1.06879 1.04853 1.85348 1.05004 1.18608 1.73873 1.22837 0.91487 1.09603 1.44414 0.91307 1.24949 0.99287 0.94511 0.94653 1.70015 1.35850 1.08586 1.35816 0.86288 0.83380 0.77684 0.78521 1.20069 1.20800 1.19982 1.73669 1.12287 1.30326 1.03210 1.21112 0.94742 0.84362 0.94127 1.22324 1.01268 1.02090 0.93486 1.21840 0.97660 0.82058 1.00879 1.41858 1.48775 1.12358 1.21616 0.74265 1.16635 0.91592 0.86020 0.84941 1.24432 0.95059 0.91159 0.95372 1.81324 1.05509 1.10487 1.04872 1.69227 1.15919 1.12106 1.27016 0.92410 0.91811 0.93048 0.89523 0.90874 0.93426 0.91118 0.91710 0.89884 0.90300 0.92217 0.82101 0.80234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.56 9.52 37.16 0.35 -1.21 16 2 C 0.05 0.68 3.23 -67.93 -0.22 0.46 16 3 H 0.07 0.95 6.70 -51.93 -0.35 0.61 16 4 C 0.13 1.90 5.24 -4.04 -0.02 1.88 16 5 N -0.62 -10.05 2.77 -181.57 -0.50 -10.56 16 6 C 0.09 1.08 10.29 59.85 0.62 1.70 16 7 C 0.53 10.84 7.03 -10.99 -0.08 10.76 16 8 O -0.49 -11.74 14.59 5.55 0.08 -11.66 16 9 C -0.15 -3.16 4.71 36.00 0.17 -2.99 16 10 S -0.06 -1.50 20.57 -107.50 -2.21 -3.71 16 11 C -0.54 -15.23 9.50 30.94 0.29 -14.93 16 12 H 0.07 1.87 7.80 -52.49 -0.41 1.46 16 13 C 0.08 2.13 5.49 -17.43 -0.10 2.03 16 14 N -0.87 -25.86 13.22 55.49 0.73 -25.13 16 15 Si 0.91 21.22 29.55 -169.99 -5.02 16.19 16 16 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 17 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 18 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 19 N -0.48 -7.91 8.50 -52.71 -0.45 -8.36 16 20 C 0.33 4.91 7.60 -155.91 -1.18 3.73 16 21 C -0.16 -2.02 10.30 -37.25 -0.38 -2.40 16 22 C 0.10 0.78 11.28 -16.57 -0.19 0.60 16 23 N -0.62 -4.14 5.31 -12.04 -0.06 -4.21 16 24 H 0.42 1.20 8.73 -40.82 -0.36 0.85 16 25 C 0.49 4.62 7.48 -157.23 -1.18 3.44 16 26 C 0.26 2.36 15.62 -22.47 -0.35 2.00 16 27 N -0.34 -3.56 18.54 41.84 0.78 -2.79 16 28 N -0.51 -6.57 8.73 -10.41 -0.09 -6.66 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.09 1.43 7.42 -51.93 -0.39 1.04 16 33 H 0.07 0.82 7.89 -51.93 -0.41 0.41 16 34 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.90 6.44 -51.93 -0.33 0.57 16 36 H 0.06 0.65 7.89 -51.93 -0.41 0.24 16 37 H 0.08 1.70 7.40 -51.91 -0.38 1.31 16 38 H 0.08 1.63 8.11 -51.92 -0.42 1.21 16 39 H 0.27 7.44 8.31 -40.82 -0.34 7.11 16 40 H 0.16 2.10 8.06 -52.49 -0.42 1.68 16 41 H 0.18 0.76 8.06 -52.49 -0.42 0.33 16 LS Contribution 375.78 15.07 5.66 5.66 Total: -1.00 -37.66 375.78 -8.48 -46.14 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -5.13 Total: 0.02 kcal Atomic # 6 Polarization: 7.33 SS G_CDS: -2.26 Total: 5.06 kcal Atomic # 7 Polarization: -58.10 SS G_CDS: 0.40 Total: -57.70 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: 0.08 Total: -11.66 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: -1.50 SS G_CDS: -2.21 Total: -3.71 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -37.66 -8.48 -46.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115630086.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.191 kcal (2) G-P(sol) polarization free energy of solvation -37.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds