Wall clock time and date at job start Tue Mar 31 2020 19:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47644 * 2 1 4 4 C 1.53006 * 109.47054 * 240.00387 * 2 1 3 5 5 N 1.46504 * 109.46883 * 185.00191 * 4 2 1 6 6 C 1.46499 * 119.99661 * 269.99401 * 5 4 2 7 7 C 1.34774 * 120.00336 * 90.00128 * 5 4 2 8 8 O 1.21288 * 119.99888 * 359.97438 * 7 5 4 9 9 C 1.50698 * 120.00423 * 179.97438 * 7 5 4 10 10 S 1.80994 * 109.47246 * 179.97438 * 9 7 5 11 11 C 1.76207 * 99.99793 * 180.02562 * 10 9 7 12 12 H 1.07992 * 119.99991 * 359.97438 * 11 10 9 13 13 C 1.38795 * 119.99905 * 180.02562 * 11 10 9 14 14 N 1.31634 * 119.99963 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00150 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.46716 * 59.99888 * 15 13 11 17 17 H 1.48496 * 109.47210 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.47230 * 300.00233 * 15 13 11 19 19 N 1.46496 * 109.47330 * 120.00365 * 2 1 3 20 20 C 1.31909 * 120.00002 * 239.99617 * 19 2 1 21 21 C 1.46884 * 120.57126 * 179.71206 * 20 19 2 22 22 C 1.34952 * 118.30346 * 179.78384 * 21 20 19 23 23 N 1.36652 * 119.29070 * 0.48362 * 22 21 20 24 24 H 0.97000 * 119.43563 * 179.74685 * 23 22 21 25 25 C 1.36217 * 121.13409 * 359.75777 * 23 22 21 26 26 C 1.43204 * 119.06860 * 179.97438 * 25 23 22 27 27 N 5.71319 * 120.87176 * 27.76657 * 2 1 3 28 28 N 1.31038 * 121.86132 * 359.97438 * 25 23 22 29 29 H 1.09001 * 109.47018 * 59.99757 * 1 2 3 30 30 H 1.08995 * 109.47070 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47069 * 299.99745 * 1 2 3 32 32 H 1.09001 * 109.47002 * 304.99688 * 4 2 1 33 33 H 1.08993 * 109.46955 * 65.00125 * 4 2 1 34 34 H 1.09003 * 109.47033 * 90.00622 * 6 5 4 35 35 H 1.09000 * 109.47241 * 210.00440 * 6 5 4 36 36 H 1.09000 * 109.47127 * 330.00198 * 6 5 4 37 37 H 1.09004 * 109.46777 * 300.00065 * 9 7 5 38 38 H 1.08998 * 109.46770 * 59.99671 * 9 7 5 39 39 H 0.97004 * 119.99594 * 180.02562 * 14 13 11 40 40 H 1.07996 * 120.84767 * 0.04059 * 21 20 19 41 41 H 1.08000 * 120.35584 * 180.22474 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5001 -0.8264 -1.1906 6 6 4.3343 0.2341 -1.7613 7 6 4.0758 -1.8987 -0.6117 8 8 3.3851 -2.7764 -0.1389 9 6 5.5777 -2.0071 -0.5518 10 16 6.0387 -3.5470 0.2800 11 6 7.7947 -3.4174 0.2125 12 1 8.2552 -2.5577 -0.2514 13 6 8.5859 -4.4206 0.7545 14 7 8.0246 -5.4687 1.3195 15 14 10.4475 -4.2836 0.6823 16 1 10.8817 -3.0575 1.3990 17 1 11.0569 -5.4748 1.3263 18 1 10.8838 -4.2090 -0.7351 19 7 2.0184 -0.6907 1.1961 20 6 2.7768 -0.0497 2.0643 21 6 3.2682 -0.7281 3.2709 22 6 4.0445 -0.0301 4.1261 23 7 4.3374 1.2757 3.8496 24 1 4.8922 1.7804 4.4647 25 6 3.8634 1.8809 2.7251 26 6 4.1973 3.2516 2.4792 27 7 4.4615 4.3391 2.2845 28 7 3.1105 1.2443 1.8619 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6054 -1.7198 -1.2953 33 1 1.7517 -0.1582 -2.1370 34 1 4.5400 0.9848 -0.9983 35 1 5.2734 -0.1924 -2.1139 36 1 3.8102 0.6989 -2.5964 37 1 5.9827 -2.0050 -1.5638 38 1 5.9812 -1.1600 0.0028 39 1 8.5777 -6.1697 1.6986 40 1 3.0180 -1.7603 3.4666 41 1 4.4269 -0.4974 5.0216 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115630086.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:09 Heat of formation + Delta-G solvation = 55.170662 kcal Electronic energy + Delta-G solvation = -26443.015198 eV Core-core repulsion = 22678.166371 eV Total energy + Delta-G solvation = -3764.848827 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.116 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.88250 -40.70118 -38.13697 -37.64601 -36.19987 -34.63744 -34.55361 -33.57525 -31.16328 -30.36311 -28.18359 -27.65261 -26.71699 -26.31375 -24.57545 -21.84922 -20.90326 -20.46775 -19.48237 -19.18325 -18.46613 -17.95567 -17.18814 -16.87289 -16.85172 -16.63997 -16.46993 -15.83031 -15.22313 -14.89188 -14.67003 -14.52400 -14.42633 -14.38216 -14.32767 -14.14461 -13.92141 -13.52686 -13.35387 -13.26469 -13.12060 -12.95978 -12.86032 -12.78131 -12.56654 -12.32427 -12.20867 -11.70552 -11.34035 -11.19695 -11.10599 -10.67766 -10.22161 -9.97190 -9.58843 -8.62072 -8.47454 -8.30984 -6.08490 -0.52030 0.52341 0.88599 1.28872 1.41110 1.44025 1.47944 1.57886 1.68659 1.79451 2.23635 2.31032 2.53995 2.78296 3.02263 3.29962 3.35024 3.64351 3.81214 4.06241 4.17927 4.18973 4.21974 4.29629 4.42985 4.49680 4.52271 4.56402 4.63982 4.81501 4.83360 4.86510 4.89361 5.13969 5.23507 5.35104 5.43120 5.51508 5.71200 5.80432 6.11787 6.22046 6.42162 6.70810 7.09598 7.22282 7.35915 8.77649 Molecular weight = 335.12amu Principal moments of inertia in cm(-1) A = 0.010511 B = 0.004004 C = 0.003425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2663.112056 B = 6990.579139 C = 8173.211275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.053 3.947 3 H 0.065 0.935 4 C 0.131 3.869 5 N -0.612 5.612 6 C 0.080 3.920 7 C 0.531 3.469 8 O -0.537 6.537 9 C -0.120 4.120 10 S -0.131 6.131 11 C -0.549 4.549 12 H 0.075 0.925 13 C 0.020 3.980 14 N -0.908 5.908 15 Si 0.993 3.007 16 H -0.260 1.260 17 H -0.277 1.277 18 H -0.266 1.266 19 N -0.538 5.538 20 C 0.335 3.665 21 C -0.221 4.221 22 C 0.147 3.853 23 N -0.600 5.600 24 H 0.445 0.555 25 C 0.498 3.502 26 C 0.280 3.720 27 N -0.358 5.358 28 N -0.541 5.541 29 H 0.083 0.917 30 H 0.048 0.952 31 H 0.046 0.954 32 H 0.058 0.942 33 H 0.111 0.889 34 H 0.050 0.950 35 H 0.070 0.930 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.088 0.912 39 H 0.271 0.729 40 H 0.142 0.858 41 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.889 19.557 4.313 21.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.060 4.060 3 H 0.083 0.917 4 C 0.008 3.992 5 N -0.347 5.347 6 C -0.062 4.062 7 C 0.317 3.683 8 O -0.413 6.413 9 C -0.271 4.271 10 S 0.096 5.904 11 C -0.696 4.696 12 H 0.094 0.906 13 C -0.185 4.185 14 N -0.544 5.544 15 Si 0.815 3.185 16 H -0.185 1.185 17 H -0.202 1.202 18 H -0.191 1.191 19 N -0.259 5.259 20 C 0.059 3.941 21 C -0.251 4.251 22 C 0.022 3.978 23 N -0.223 5.223 24 H 0.286 0.714 25 C 0.220 3.780 26 C -0.040 4.040 27 N -0.036 5.036 28 N -0.271 5.271 29 H 0.102 0.898 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.129 0.871 34 H 0.069 0.931 35 H 0.089 0.911 36 H 0.118 0.882 37 H 0.113 0.887 38 H 0.107 0.893 39 H 0.080 0.920 40 H 0.159 0.841 41 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -9.455 18.980 3.679 21.521 hybrid contribution 2.242 0.727 0.151 2.361 sum -7.214 19.706 3.830 21.332 Atomic orbital electron populations 1.21616 0.92786 1.01711 1.02066 1.21951 0.96065 0.97152 0.90793 0.91690 1.21630 0.78806 1.01218 0.97581 1.47715 1.07176 1.20966 1.58796 1.21912 0.95670 0.89697 0.98930 1.19920 0.88965 0.81860 0.77544 1.90691 1.64654 1.40265 1.45646 1.23317 0.95773 1.03433 1.04565 1.85531 1.06034 1.23375 1.75479 1.23129 0.91535 1.10169 1.44814 0.90641 1.26027 1.04963 0.93785 0.93765 1.70175 1.38049 1.09526 1.36690 0.85084 0.76167 0.78283 0.78956 1.18474 1.20196 1.19127 1.73678 1.15398 1.31849 1.05008 1.21358 0.93651 0.84948 0.94125 1.22292 1.05340 1.02296 0.95155 1.22431 0.93634 0.81521 1.00208 1.41955 1.47423 1.12070 1.20870 0.71399 1.16655 0.90453 0.85932 0.85006 1.24114 0.94485 0.90604 0.94808 1.81364 1.06017 1.10867 1.05341 1.69165 1.17679 1.11638 1.28571 0.89839 0.93312 0.93464 0.92301 0.87145 0.93107 0.91091 0.88233 0.88651 0.89341 0.91969 0.84064 0.75637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.97 9.52 71.98 0.69 -2.28 16 2 C 0.05 1.51 3.23 44.99 0.15 1.66 16 3 H 0.07 1.83 6.70 -2.39 -0.02 1.82 16 4 C 0.13 3.75 5.24 86.38 0.45 4.20 16 5 N -0.61 -19.47 2.77 -846.74 -2.35 -21.82 16 6 C 0.08 1.87 10.29 127.77 1.31 3.19 16 7 C 0.53 22.14 7.03 87.66 0.62 22.75 16 8 O -0.54 -26.95 14.59 -3.05 -0.04 -27.00 16 9 C -0.12 -5.18 4.71 71.24 0.34 -4.85 16 10 S -0.13 -7.40 20.57 -56.49 -1.16 -8.56 16 11 C -0.55 -31.35 9.50 67.95 0.65 -30.71 16 12 H 0.08 4.06 7.80 -2.91 -0.02 4.03 16 13 C 0.02 1.11 5.49 84.86 0.47 1.58 16 14 N -0.91 -54.97 13.22 21.65 0.29 -54.68 16 15 Si 0.99 42.88 29.55 68.60 2.03 44.91 16 16 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 17 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 18 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 19 N -0.54 -18.76 8.50 -320.68 -2.72 -21.49 16 20 C 0.33 10.09 7.60 136.53 1.04 11.13 16 21 C -0.22 -5.60 10.30 23.78 0.24 -5.36 16 22 C 0.15 1.98 11.28 83.19 0.94 2.92 16 23 N -0.60 -6.11 5.31 -191.99 -1.02 -7.13 16 24 H 0.44 0.64 8.73 -92.71 -0.81 -0.17 16 25 C 0.50 8.41 7.48 135.43 1.01 9.43 16 26 C 0.28 4.42 15.62 88.33 1.38 5.80 16 27 N -0.36 -6.63 18.54 19.00 0.35 -6.28 16 28 N -0.54 -13.42 8.73 -186.86 -1.63 -15.05 16 29 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.06 2.03 7.42 -2.39 -0.02 2.01 16 33 H 0.11 2.26 7.89 -2.39 -0.02 2.24 16 34 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.07 1.66 6.44 -2.39 -0.02 1.64 16 36 H 0.10 1.65 7.89 -2.39 -0.02 1.64 16 37 H 0.10 3.86 7.40 -2.39 -0.02 3.84 16 38 H 0.09 3.62 8.11 -2.40 -0.02 3.60 16 39 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 40 H 0.14 4.07 8.06 -2.91 -0.02 4.04 16 41 H 0.23 0.96 8.06 -2.91 -0.02 0.94 16 Total: -1.00 -86.87 375.78 3.28 -83.59 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: 0.27 Total: 14.05 kcal Atomic # 6 Polarization: 10.18 SS G_CDS: 9.27 Total: 19.45 kcal Atomic # 7 Polarization: -119.36 SS G_CDS: -7.08 Total: -126.44 kcal Atomic # 8 Polarization: -26.95 SS G_CDS: -0.04 Total: -27.00 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Atomic # 16 Polarization: -7.40 SS G_CDS: -1.16 Total: -8.56 kcal Total: -86.87 3.28 -83.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115630086.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.764 kcal (2) G-P(sol) polarization free energy of solvation -86.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds