Wall clock time and date at job start Tue Mar 31 2020 19:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.46676 * 2 1 4 4 C 1.53238 * 109.46781 * 240.01695 * 2 1 3 5 5 H 1.09006 * 109.58180 * 302.13458 * 4 2 1 6 6 C 1.52997 * 109.58521 * 62.54163 * 4 2 1 7 7 S 1.81738 * 108.80176 * 182.33956 * 4 2 1 8 8 O 1.42100 * 109.47022 * 170.57546 * 7 4 2 9 9 C 1.81744 * 102.30477 * 54.53690 * 7 4 2 10 10 C 1.53752 * 108.75248 * 305.34656 * 9 7 4 11 11 N 1.46370 * 109.20629 * 57.83377 * 10 9 7 12 12 C 1.34781 * 119.64998 * 114.90763 * 11 10 9 13 13 O 1.21275 * 120.00240 * 185.62274 * 12 11 10 14 14 C 1.50703 * 119.99631 * 5.62554 * 12 11 10 15 15 C 1.50704 * 109.47149 * 180.02562 * 14 12 11 16 16 C 1.37642 * 120.12368 * 265.02385 * 15 14 12 17 17 C 1.38617 * 120.24414 * 179.97438 * 16 15 14 18 18 C 1.38654 * 120.50340 * 359.97438 * 17 16 15 19 19 C 1.37598 * 120.24882 * 0.02562 * 18 17 16 20 20 C 1.40692 * 120.12848 * 84.99773 * 15 14 12 21 21 C 1.41392 * 120.24511 * 0.02562 * 20 15 14 22 22 H 1.08007 * 119.99925 * 325.13210 * 21 20 15 23 23 C 1.39946 * 120.00377 * 145.13590 * 21 20 15 24 24 N 1.30824 * 119.99663 * 4.70315 * 23 21 20 25 25 Si 1.86797 * 120.00346 * 184.70322 * 23 21 20 26 26 H 1.48508 * 109.47060 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.47410 * 119.99436 * 25 23 21 28 28 H 1.48495 * 109.47413 * 239.99867 * 25 23 21 29 29 H 1.09005 * 109.46804 * 294.33125 * 1 2 3 30 30 H 1.08999 * 109.46857 * 54.32593 * 1 2 3 31 31 H 1.08998 * 109.47259 * 174.33278 * 1 2 3 32 32 H 1.09001 * 109.47384 * 60.00622 * 6 4 2 33 33 H 1.09001 * 109.47617 * 180.02562 * 6 4 2 34 34 H 1.09004 * 109.47233 * 300.00330 * 6 4 2 35 35 H 1.08997 * 109.58553 * 65.25889 * 9 7 4 36 36 H 1.09008 * 109.58139 * 185.53263 * 9 7 4 37 37 H 1.09000 * 109.61291 * 297.91152 * 10 9 7 38 38 H 1.09005 * 109.60392 * 177.75140 * 10 9 7 39 39 H 1.08999 * 109.47619 * 59.99927 * 14 12 11 40 40 H 1.09000 * 109.46976 * 299.99580 * 14 12 11 41 41 H 1.08002 * 119.87939 * 359.96991 * 16 15 14 42 42 H 1.07995 * 119.74433 * 180.02562 * 17 16 15 43 43 H 1.08001 * 119.87666 * 180.28387 * 18 17 16 44 44 H 1.08002 * 120.12814 * 179.97438 * 19 18 17 45 45 H 0.97004 * 119.99860 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0407 -0.7220 -1.2514 5 1 1.6474 -1.7384 -1.2729 6 6 1.5850 0.0335 -2.5013 7 16 3.8566 -0.7725 -1.1984 8 8 4.3371 -1.6224 -2.2310 9 6 4.1757 -1.5418 0.4170 10 6 3.4484 -0.7316 1.5026 11 7 2.0180 -0.6900 1.1951 12 6 1.1401 -1.2887 2.0243 13 8 -0.0337 -1.3470 1.7251 14 6 1.6173 -1.8856 3.3232 15 6 0.4482 -2.4891 4.0582 16 6 -0.2158 -1.7590 5.0177 17 6 -1.2918 -2.3114 5.6949 18 6 -1.7120 -3.6027 5.4146 19 6 -1.0631 -4.3508 4.4594 20 6 0.0309 -3.8005 3.7658 21 6 0.7054 -4.5598 2.7821 22 1 1.1075 -4.0730 1.9058 23 6 0.8518 -5.9422 2.9437 24 7 0.2861 -6.5458 3.9572 25 14 1.8549 -6.9255 1.7124 26 1 2.3852 -6.0147 0.6661 27 1 2.9851 -7.5883 2.4113 28 1 0.9916 -7.9552 1.0803 29 1 -0.3633 0.4234 0.9364 30 1 -0.3633 0.5993 -0.8348 31 1 -0.3634 -1.0226 -0.1015 32 1 1.9852 1.0472 -2.4793 33 1 1.9488 -0.4817 -3.3903 34 1 0.4959 0.0733 -2.5250 35 1 3.8050 -2.5668 0.4132 36 1 5.2474 -1.5416 0.6164 37 1 3.8442 0.2837 1.5282 38 1 3.5978 -1.2042 2.4734 39 1 2.0696 -1.1065 3.9367 40 1 2.3556 -2.6606 3.1173 41 1 0.1027 -0.7522 5.2439 42 1 -1.8072 -1.7312 6.4460 43 1 -2.5544 -4.0214 5.9452 44 1 -1.3918 -5.3565 4.2429 45 1 0.3879 -7.5039 4.0694 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776938235.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:46 Heat of formation + Delta-G solvation = -34.401504 kcal Electronic energy + Delta-G solvation = -27921.296199 eV Core-core repulsion = 24223.810824 eV Total energy + Delta-G solvation = -3697.485375 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.21114 -37.67592 -36.26621 -35.69831 -34.49591 -33.56812 -31.71107 -30.54701 -29.45548 -28.89516 -26.68770 -25.21399 -24.71348 -23.40000 -21.52025 -20.89648 -20.02343 -18.67604 -17.59916 -17.14955 -16.63681 -16.11048 -15.81727 -15.45895 -15.19688 -14.85384 -14.55835 -14.37988 -13.89013 -13.67549 -13.29330 -13.13321 -12.99325 -12.83597 -12.59378 -12.32811 -12.22726 -12.03500 -11.76654 -11.74438 -11.71908 -11.54882 -11.44053 -11.19054 -11.07797 -10.99704 -10.92773 -10.62860 -10.34986 -9.82962 -9.56166 -9.46084 -9.13601 -8.52416 -8.50977 -8.36135 -7.32462 -7.18978 -6.62172 -4.40607 1.43468 2.40097 2.74055 2.90914 3.06461 3.09823 3.15438 3.22676 3.25220 3.66198 3.94711 4.51516 4.67834 4.72969 4.84803 4.91957 4.99275 5.16264 5.26115 5.36573 5.50287 5.53229 5.58089 5.70650 5.80903 5.85923 5.88945 5.94098 6.00663 6.04226 6.23838 6.32842 6.37967 6.48057 6.58764 6.77382 6.91025 7.11737 7.28468 7.42998 7.58453 7.69692 7.88690 8.09515 8.10469 8.31955 8.65453 8.74564 8.93699 9.00708 10.28527 Molecular weight = 335.13amu Principal moments of inertia in cm(-1) A = 0.011683 B = 0.004791 C = 0.003856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2396.055212 B = 5843.049053 C = 7258.815041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.174 3.826 3 H 0.085 0.915 4 C -0.420 4.420 5 H 0.097 0.903 6 C -0.124 4.124 7 S 1.232 4.768 8 O -0.854 6.854 9 C -0.462 4.462 10 C 0.133 3.867 11 N -0.635 5.635 12 C 0.517 3.483 13 O -0.503 6.503 14 C -0.075 4.075 15 C -0.170 4.170 16 C -0.089 4.089 17 C -0.227 4.227 18 C -0.114 4.114 19 C -0.147 4.147 20 C 0.123 3.877 21 C -0.459 4.459 22 H 0.069 0.931 23 C 0.074 3.926 24 N -0.811 5.811 25 Si 0.904 3.096 26 H -0.266 1.266 27 H -0.273 1.273 28 H -0.273 1.273 29 H 0.070 0.930 30 H 0.039 0.961 31 H 0.081 0.919 32 H 0.067 0.933 33 H 0.058 0.942 34 H 0.073 0.927 35 H 0.095 0.905 36 H 0.123 0.877 37 H 0.085 0.915 38 H 0.101 0.899 39 H 0.077 0.923 40 H 0.096 0.904 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.127 0.873 45 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.155 15.037 -5.804 18.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.070 3.930 3 H 0.102 0.898 4 C -0.539 4.539 5 H 0.115 0.885 6 C -0.183 4.183 7 S 1.432 4.568 8 O -0.850 6.850 9 C -0.601 4.601 10 C 0.008 3.992 11 N -0.371 5.371 12 C 0.307 3.693 13 O -0.376 6.376 14 C -0.114 4.114 15 C -0.172 4.172 16 C -0.107 4.107 17 C -0.246 4.246 18 C -0.132 4.132 19 C -0.167 4.167 20 C 0.120 3.880 21 C -0.490 4.490 22 H 0.088 0.912 23 C -0.141 4.141 24 N -0.438 5.438 25 Si 0.730 3.270 26 H -0.190 1.190 27 H -0.198 1.198 28 H -0.199 1.199 29 H 0.089 0.911 30 H 0.057 0.943 31 H 0.100 0.900 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.091 0.909 35 H 0.114 0.886 36 H 0.141 0.859 37 H 0.104 0.896 38 H 0.119 0.881 39 H 0.096 0.904 40 H 0.114 0.886 41 H 0.103 0.897 42 H 0.104 0.896 43 H 0.105 0.895 44 H 0.145 0.855 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 8.157 15.035 -6.568 18.322 hybrid contribution -0.293 -2.892 -0.344 2.927 sum 7.864 12.143 -6.912 16.033 Atomic orbital electron populations 1.22284 0.91844 1.04036 1.00902 1.20738 0.96967 0.94113 0.81211 0.89760 1.27878 1.19102 1.05846 1.01082 0.88467 1.21428 1.02943 0.99508 0.94400 1.70157 0.87537 1.15256 0.83883 1.93110 1.72639 1.70945 1.48260 1.28105 1.07005 1.09442 1.15517 1.21287 0.79579 1.00111 0.98174 1.48290 1.06855 1.56949 1.25038 1.21255 0.85985 0.76505 0.85545 1.90746 1.17639 1.54944 1.74252 1.20385 0.99169 0.99617 0.92254 1.19194 0.99585 0.97152 1.01261 1.20303 0.96365 0.96922 0.97141 1.20384 1.02073 0.96808 1.05363 1.20763 0.99119 0.94579 0.98780 1.21590 0.96051 1.00496 0.98528 1.17380 0.89500 0.89861 0.91210 1.19412 1.32278 0.91631 1.05666 0.91245 1.25803 0.94950 0.98143 0.95233 1.69762 1.36272 1.10992 1.26782 0.86321 0.79969 0.79889 0.80862 1.19040 1.19833 1.19866 0.91133 0.94269 0.90031 0.91370 0.92267 0.90857 0.88615 0.85879 0.89644 0.88052 0.90431 0.88628 0.89655 0.89580 0.89504 0.85517 0.91264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.87 7.11 37.16 0.26 -1.61 16 2 C 0.17 2.00 2.82 -67.88 -0.19 1.81 16 3 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 4 C -0.42 -4.91 2.80 -26.61 -0.07 -4.98 16 5 H 0.10 1.50 8.14 -51.92 -0.42 1.08 16 6 C -0.12 -1.17 8.93 37.16 0.33 -0.84 16 7 S 1.23 12.67 13.08 -107.50 -1.41 11.26 16 8 O -0.85 -14.49 18.14 -35.23 -0.64 -15.13 16 9 C -0.46 -4.82 6.67 37.55 0.25 -4.57 16 10 C 0.13 1.26 6.17 -3.72 -0.02 1.24 16 11 N -0.63 -8.40 2.78 -165.70 -0.46 -8.86 16 12 C 0.52 9.32 7.09 -10.98 -0.08 9.25 16 13 O -0.50 -10.91 11.32 5.56 0.06 -10.85 16 14 C -0.07 -1.38 3.53 -29.03 -0.10 -1.48 16 15 C -0.17 -3.95 4.43 -103.91 -0.46 -4.41 16 16 C -0.09 -1.98 9.66 -39.66 -0.38 -2.36 16 17 C -0.23 -5.14 10.05 -39.29 -0.39 -5.54 16 18 C -0.11 -2.74 10.02 -39.66 -0.40 -3.14 16 19 C -0.15 -3.92 8.68 -38.87 -0.34 -4.25 16 20 C 0.12 3.24 5.55 -106.83 -0.59 2.65 16 21 C -0.46 -12.15 7.91 -37.74 -0.30 -12.45 16 22 H 0.07 1.83 6.99 -52.48 -0.37 1.47 16 23 C 0.07 1.89 5.42 -17.34 -0.09 1.79 16 24 N -0.81 -21.30 10.61 55.55 0.59 -20.71 16 25 Si 0.90 19.75 29.56 -169.99 -5.03 14.73 16 26 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 27 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 28 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16 29 H 0.07 1.11 6.80 -51.93 -0.35 0.76 16 30 H 0.04 0.45 6.81 -51.93 -0.35 0.09 16 31 H 0.08 1.46 6.54 -51.93 -0.34 1.12 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.70 6.64 -51.93 -0.34 0.35 16 35 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 36 H 0.12 0.96 8.14 -51.92 -0.42 0.54 16 37 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.10 0.97 5.73 -51.93 -0.30 0.68 16 39 H 0.08 1.16 7.82 -51.93 -0.41 0.76 16 40 H 0.10 1.79 6.69 -51.93 -0.35 1.44 16 41 H 0.09 1.64 8.06 -52.49 -0.42 1.22 16 42 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 43 H 0.09 1.88 8.06 -52.49 -0.42 1.45 16 44 H 0.13 3.52 6.14 -52.49 -0.32 3.20 16 45 H 0.28 6.67 8.30 -40.82 -0.34 6.34 16 LS Contribution 363.28 15.07 5.47 5.47 Total: -1.00 -35.80 363.28 -10.48 -46.28 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -6.49 Total: 6.71 kcal Atomic # 6 Polarization: -26.33 SS G_CDS: -2.58 Total: -28.91 kcal Atomic # 7 Polarization: -29.70 SS G_CDS: 0.13 Total: -29.57 kcal Atomic # 8 Polarization: -25.40 SS G_CDS: -0.58 Total: -25.98 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.03 Total: 14.73 kcal Atomic # 16 Polarization: 12.67 SS G_CDS: -1.41 Total: 11.26 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.80 -10.48 -46.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776938235.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.875 kcal (2) G-P(sol) polarization free energy of solvation -35.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds