Wall clock time and date at job start Tue Mar 31 2020 18:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47170 * 2 1 4 4 C 1.53001 * 109.47086 * 240.00090 * 2 1 3 5 5 O 1.45205 * 109.47577 * 120.00025 * 2 1 3 6 6 C 1.34635 * 116.99465 * 59.99774 * 5 2 1 7 7 O 1.21503 * 120.00444 * 0.02562 * 6 5 2 8 8 N 1.34783 * 119.99676 * 180.02562 * 6 5 2 9 9 C 1.46498 * 120.00040 * 184.99596 * 8 6 5 10 10 C 1.50702 * 115.55083 * 294.65768 * 9 8 6 11 11 O 1.20828 * 119.99673 * 171.33008 * 10 9 8 12 12 O 1.34220 * 120.00186 * 351.60812 * 10 9 8 13 13 C 1.45195 * 117.00375 * 179.72492 * 12 10 9 14 14 C 1.53000 * 109.47642 * 180.02562 * 13 12 10 15 15 C 1.50697 * 109.47259 * 180.02562 * 14 13 12 16 16 H 1.07995 * 120.00004 * 359.97438 * 15 14 13 17 17 C 1.37884 * 119.99837 * 179.97438 * 15 14 13 18 18 N 1.31508 * 119.99838 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99943 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46936 * 90.00363 * 19 17 15 21 21 H 1.48496 * 109.47239 * 210.00115 * 19 17 15 22 22 H 1.48501 * 109.46997 * 330.00503 * 19 17 15 23 23 C 1.53002 * 117.51651 * 148.95295 * 9 8 6 24 24 C 1.52997 * 59.99932 * 252.52142 * 23 9 8 25 25 F 1.39907 * 117.49917 * 252.50691 * 24 23 9 26 26 F 1.39904 * 117.51585 * 107.48297 * 24 23 9 27 27 H 1.09000 * 109.46687 * 299.99472 * 1 2 3 28 28 H 1.08997 * 109.46923 * 59.99985 * 1 2 3 29 29 H 1.08999 * 109.46653 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47150 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.47209 * 299.99840 * 3 2 1 32 32 H 1.08999 * 109.47236 * 59.99957 * 3 2 1 33 33 H 1.08999 * 109.47270 * 299.99494 * 4 2 1 34 34 H 1.08997 * 109.47301 * 60.00156 * 4 2 1 35 35 H 1.09000 * 109.47086 * 180.02562 * 4 2 1 36 36 H 0.96999 * 119.99720 * 4.99866 * 8 6 5 37 37 H 1.09007 * 109.47150 * 299.99937 * 13 12 10 38 38 H 1.09002 * 109.46957 * 59.99630 * 13 12 10 39 39 H 1.09007 * 109.46610 * 300.00039 * 14 13 12 40 40 H 1.09002 * 109.47433 * 59.99693 * 14 13 12 41 41 H 0.96999 * 120.00013 * 179.97438 * 18 17 15 42 42 H 1.08999 * 117.49816 * 0.02562 * 23 9 8 43 43 H 1.08997 * 117.49609 * 145.03297 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0141 -0.6845 1.1856 6 6 1.6523 -1.9723 1.3383 7 8 0.9517 -2.5097 0.5036 8 7 2.0674 -2.6655 2.4171 9 6 1.7664 -4.0947 2.5297 10 6 0.3060 -4.4431 2.6601 11 8 -0.0475 -5.5970 2.6007 12 8 -0.6027 -3.4711 2.8365 13 6 -1.9916 -3.8795 2.9480 14 6 -2.8725 -2.6438 3.1430 15 6 -4.3139 -3.0677 3.2593 16 1 -4.5756 -4.1138 3.1998 17 6 -5.2987 -2.1200 3.4418 18 7 -4.9800 -0.8461 3.5138 19 14 -7.0855 -2.6454 3.5854 20 1 -7.4134 -2.9005 5.0111 21 1 -7.9620 -1.5674 3.0611 22 1 -7.3014 -3.8859 2.7981 23 6 2.7715 -4.9720 3.2788 24 6 2.6584 -5.0676 1.7560 25 9 2.0559 -6.2126 1.2237 26 9 3.6991 -4.5242 0.9951 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 1.6768 -1.7489 -1.2493 34 1 1.6767 -0.2074 -2.1392 35 1 3.1300 -0.7216 -1.2490 36 1 2.5654 -2.2179 3.1189 37 1 -2.2917 -4.3992 2.0381 38 1 -2.1067 -4.5466 3.8023 39 1 -2.5725 -2.1236 4.0527 40 1 -2.7573 -1.9769 2.2884 41 1 -5.6727 -0.1793 3.6419 42 1 3.6569 -4.4856 3.6883 43 1 2.3765 -5.8010 3.8658 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870028538.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:24 Heat of formation + Delta-G solvation = -230.950636 kcal Electronic energy + Delta-G solvation = -30870.806637 eV Core-core repulsion = 26167.815851 eV Total energy + Delta-G solvation = -4702.990786 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.95315 -47.60209 -40.97888 -40.13990 -37.95638 -36.65427 -35.81654 -34.23959 -33.36352 -32.58209 -30.32793 -27.45519 -27.27161 -26.03120 -24.40911 -23.25063 -22.83991 -21.00076 -20.36957 -20.10043 -18.64192 -18.30987 -17.54528 -17.14584 -16.51746 -16.40130 -16.09578 -16.05105 -15.86950 -15.60502 -14.63614 -14.54990 -14.31070 -14.22799 -14.20496 -13.79592 -13.55603 -13.44688 -13.24138 -12.83857 -12.54579 -12.37345 -12.29918 -11.96163 -11.83710 -11.80591 -11.55987 -11.31864 -11.26328 -11.07489 -10.91283 -10.83128 -10.76593 -10.55999 -10.33853 -10.05064 -9.75958 -9.67443 -9.40316 -9.26735 -8.44816 -6.10868 -4.15120 1.72863 1.80378 2.38264 2.61970 2.76039 3.22552 3.28206 3.34282 3.38706 3.60441 3.83256 4.16452 4.31639 4.44432 4.70283 4.75274 4.88042 4.90853 5.01418 5.24567 5.25863 5.42569 5.51181 5.60496 5.65705 5.77343 5.83428 5.93176 6.01876 6.02392 6.08464 6.29352 6.44153 6.56828 6.60927 6.83708 7.15481 7.52756 7.61527 7.83273 8.04142 8.22807 8.29302 8.90040 9.49143 11.00602 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.010070 B = 0.004120 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2779.960761 B = 6794.771654 C = 8975.449409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.137 3.863 3 C -0.139 4.139 4 C -0.183 4.183 5 O -0.359 6.359 6 C 0.662 3.338 7 O -0.542 6.542 8 N -0.673 5.673 9 C 0.108 3.892 10 C 0.492 3.508 11 O -0.494 6.494 12 O -0.335 6.335 13 C 0.076 3.924 14 C 0.028 3.972 15 C -0.526 4.526 16 H 0.059 0.941 17 C 0.062 3.938 18 N -0.890 5.890 19 Si 0.899 3.101 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.272 1.272 23 C -0.133 4.133 24 C 0.239 3.761 25 F -0.132 7.132 26 F -0.145 7.145 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.091 0.909 30 H 0.064 0.936 31 H 0.081 0.919 32 H 0.069 0.931 33 H 0.087 0.913 34 H 0.071 0.929 35 H 0.058 0.942 36 H 0.418 0.582 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.027 0.973 40 H 0.028 0.972 41 H 0.263 0.737 42 H 0.147 0.853 43 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.103 0.021 -2.903 21.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.101 3.899 3 C -0.196 4.196 4 C -0.241 4.241 5 O -0.274 6.274 6 C 0.416 3.584 7 O -0.428 6.428 8 N -0.334 5.334 9 C 0.016 3.984 10 C 0.332 3.668 11 O -0.382 6.382 12 O -0.250 6.250 13 C 0.004 3.996 14 C -0.009 4.009 15 C -0.564 4.564 16 H 0.078 0.922 17 C -0.140 4.140 18 N -0.528 5.528 19 Si 0.726 3.274 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.197 1.197 23 C -0.171 4.171 24 C 0.200 3.800 25 F -0.113 7.113 26 F -0.126 7.126 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.110 0.890 30 H 0.083 0.917 31 H 0.099 0.901 32 H 0.088 0.912 33 H 0.106 0.894 34 H 0.090 0.910 35 H 0.077 0.923 36 H 0.256 0.744 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.045 0.955 40 H 0.047 0.953 41 H 0.073 0.927 42 H 0.165 0.835 43 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 20.505 -0.301 -3.449 20.795 hybrid contribution -0.872 -0.046 0.146 0.886 sum 19.632 -0.348 -3.304 19.911 Atomic orbital electron populations 1.22526 0.93020 1.05794 1.02930 1.22161 0.95022 0.91233 0.81493 1.21857 1.01842 0.92543 1.03398 1.22522 1.01221 1.03657 0.96653 1.86259 1.71200 1.22847 1.47052 1.17806 0.78193 0.80803 0.81596 1.90972 1.38583 1.70249 1.42984 1.43435 1.61193 1.05926 1.22881 1.21318 0.90290 0.80920 1.05888 1.21730 0.86917 0.84310 0.73818 1.90721 1.80578 1.20753 1.46103 1.86508 1.20051 1.38063 1.80382 1.23753 0.73493 1.01419 1.00917 1.19145 0.92171 0.91072 0.98533 1.20962 0.90639 0.93661 1.51123 0.92241 1.24968 0.99382 0.94799 0.94894 1.69972 1.33526 1.00206 1.49075 0.86476 0.84089 0.78388 0.78397 1.20475 1.21042 1.19685 1.24862 0.99424 1.00547 0.92311 1.20027 0.86917 0.84525 0.88538 1.93156 1.82311 1.48115 1.87671 1.93071 1.56721 1.85055 1.77711 0.91487 0.91157 0.89027 0.91690 0.90056 0.91226 0.89409 0.91015 0.92341 0.74450 0.92054 0.92114 0.95497 0.95335 0.92738 0.83548 0.83186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.72 8.37 37.16 0.31 -2.41 16 2 C 0.14 1.74 1.13 -90.62 -0.10 1.63 16 3 C -0.14 -1.30 8.85 37.16 0.33 -0.97 16 4 C -0.18 -2.18 8.37 37.16 0.31 -1.87 16 5 O -0.36 -4.99 9.94 -40.31 -0.40 -5.39 16 6 C 0.66 10.30 7.63 54.06 0.41 10.71 16 7 O -0.54 -10.12 11.16 -19.88 -0.22 -10.34 16 8 N -0.67 -8.45 5.12 -53.56 -0.27 -8.73 16 9 C 0.11 1.45 2.29 -132.97 -0.30 1.15 16 10 C 0.49 8.98 6.98 36.01 0.25 9.23 16 11 O -0.49 -9.81 15.21 -18.75 -0.29 -10.09 16 12 O -0.34 -6.98 9.38 -39.84 -0.37 -7.36 16 13 C 0.08 1.75 5.40 37.16 0.20 1.95 16 14 C 0.03 0.74 5.35 -27.88 -0.15 0.59 16 15 C -0.53 -14.91 9.11 -34.44 -0.31 -15.22 16 16 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 17 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 18 N -0.89 -26.37 13.29 55.43 0.74 -25.63 16 19 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 23 C -0.13 -1.10 10.03 -26.73 -0.27 -1.37 16 24 C 0.24 3.03 5.15 -26.73 -0.14 2.89 16 25 F -0.13 -2.02 16.07 2.25 0.04 -1.98 16 26 F -0.15 -1.82 17.43 2.25 0.04 -1.78 16 27 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 29 H 0.09 1.65 5.88 -51.93 -0.31 1.35 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.09 1.29 5.88 -51.93 -0.31 0.98 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.42 3.65 8.94 -40.82 -0.36 3.28 16 37 H 0.06 1.43 8.13 -51.93 -0.42 1.01 16 38 H 0.06 1.33 8.13 -51.93 -0.42 0.91 16 39 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.26 7.31 8.31 -40.82 -0.34 6.98 16 42 H 0.15 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.15 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 375.17 15.07 5.65 5.65 Total: -1.00 -34.60 375.17 -5.68 -40.28 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -6.01 Total: 0.92 kcal Atomic # 6 Polarization: 7.53 SS G_CDS: 0.44 Total: 7.98 kcal Atomic # 7 Polarization: -34.82 SS G_CDS: 0.46 Total: -34.36 kcal Atomic # 8 Polarization: -31.90 SS G_CDS: -1.28 Total: -33.19 kcal Atomic # 9 Polarization: -3.84 SS G_CDS: 0.08 Total: -3.76 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.60 -5.68 -40.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870028538.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -190.675 kcal (2) G-P(sol) polarization free energy of solvation -34.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -225.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -230.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds