Wall clock time and date at job start Tue Mar 31 2020 18:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47170 * 2 1 4 4 C 1.53001 * 109.47086 * 240.00090 * 2 1 3 5 5 O 1.45205 * 109.47577 * 120.00025 * 2 1 3 6 6 C 1.34635 * 116.99465 * 59.99774 * 5 2 1 7 7 O 1.21503 * 120.00444 * 0.02562 * 6 5 2 8 8 N 1.34783 * 119.99676 * 180.02562 * 6 5 2 9 9 C 1.46498 * 120.00040 * 184.99596 * 8 6 5 10 10 C 1.50702 * 115.55083 * 294.65768 * 9 8 6 11 11 O 1.20828 * 119.99673 * 171.33008 * 10 9 8 12 12 O 1.34220 * 120.00186 * 351.60812 * 10 9 8 13 13 C 1.45195 * 117.00375 * 179.72492 * 12 10 9 14 14 C 1.53000 * 109.47642 * 180.02562 * 13 12 10 15 15 C 1.50697 * 109.47259 * 180.02562 * 14 13 12 16 16 H 1.07995 * 120.00004 * 359.97438 * 15 14 13 17 17 C 1.37884 * 119.99837 * 179.97438 * 15 14 13 18 18 N 1.31508 * 119.99838 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99943 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46936 * 90.00363 * 19 17 15 21 21 H 1.48496 * 109.47239 * 210.00115 * 19 17 15 22 22 H 1.48501 * 109.46997 * 330.00503 * 19 17 15 23 23 C 1.53002 * 117.51651 * 148.95295 * 9 8 6 24 24 C 1.52997 * 59.99932 * 252.52142 * 23 9 8 25 25 F 1.39907 * 117.49917 * 252.50691 * 24 23 9 26 26 F 1.39904 * 117.51585 * 107.48297 * 24 23 9 27 27 H 1.09000 * 109.46687 * 299.99472 * 1 2 3 28 28 H 1.08997 * 109.46923 * 59.99985 * 1 2 3 29 29 H 1.08999 * 109.46653 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47150 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.47209 * 299.99840 * 3 2 1 32 32 H 1.08999 * 109.47236 * 59.99957 * 3 2 1 33 33 H 1.08999 * 109.47270 * 299.99494 * 4 2 1 34 34 H 1.08997 * 109.47301 * 60.00156 * 4 2 1 35 35 H 1.09000 * 109.47086 * 180.02562 * 4 2 1 36 36 H 0.96999 * 119.99720 * 4.99866 * 8 6 5 37 37 H 1.09007 * 109.47150 * 299.99937 * 13 12 10 38 38 H 1.09002 * 109.46957 * 59.99630 * 13 12 10 39 39 H 1.09007 * 109.46610 * 300.00039 * 14 13 12 40 40 H 1.09002 * 109.47433 * 59.99693 * 14 13 12 41 41 H 0.96999 * 120.00013 * 179.97438 * 18 17 15 42 42 H 1.08999 * 117.49816 * 0.02562 * 23 9 8 43 43 H 1.08997 * 117.49609 * 145.03297 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0141 -0.6845 1.1856 6 6 1.6523 -1.9723 1.3383 7 8 0.9517 -2.5097 0.5036 8 7 2.0674 -2.6655 2.4171 9 6 1.7664 -4.0947 2.5297 10 6 0.3060 -4.4431 2.6601 11 8 -0.0475 -5.5970 2.6007 12 8 -0.6027 -3.4711 2.8365 13 6 -1.9916 -3.8795 2.9480 14 6 -2.8725 -2.6438 3.1430 15 6 -4.3139 -3.0677 3.2593 16 1 -4.5756 -4.1138 3.1998 17 6 -5.2987 -2.1200 3.4418 18 7 -4.9800 -0.8461 3.5138 19 14 -7.0855 -2.6454 3.5854 20 1 -7.4134 -2.9005 5.0111 21 1 -7.9620 -1.5674 3.0611 22 1 -7.3014 -3.8859 2.7981 23 6 2.7715 -4.9720 3.2788 24 6 2.6584 -5.0676 1.7560 25 9 2.0559 -6.2126 1.2237 26 9 3.6991 -4.5242 0.9951 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 1.6768 -1.7489 -1.2493 34 1 1.6767 -0.2074 -2.1392 35 1 3.1300 -0.7216 -1.2490 36 1 2.5654 -2.2179 3.1189 37 1 -2.2917 -4.3992 2.0381 38 1 -2.1067 -4.5466 3.8023 39 1 -2.5725 -2.1236 4.0527 40 1 -2.7573 -1.9769 2.2884 41 1 -5.6727 -0.1793 3.6419 42 1 3.6569 -4.4856 3.6883 43 1 2.3765 -5.8010 3.8658 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870028538.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:23 Heat of formation + Delta-G solvation = -254.282243 kcal Electronic energy + Delta-G solvation = -30871.818371 eV Core-core repulsion = 26167.815851 eV Total energy + Delta-G solvation = -4704.002520 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.142 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.95692 -48.63247 -42.19714 -41.51370 -39.11730 -38.06342 -37.14221 -35.50738 -35.31259 -33.60847 -32.40840 -28.39207 -28.30132 -27.72508 -26.01862 -24.31548 -23.90544 -22.95978 -21.62872 -21.25288 -19.85828 -19.42572 -18.74718 -18.64345 -18.07201 -17.66659 -17.59884 -17.38994 -17.06641 -16.90298 -16.52263 -15.76445 -15.43190 -15.35624 -15.23209 -15.01052 -14.82290 -14.70517 -14.51737 -14.41203 -13.87892 -13.38268 -13.29841 -13.23049 -13.12007 -12.95962 -12.88635 -12.84930 -12.67637 -12.63162 -12.60911 -12.36988 -12.12205 -11.91811 -11.70591 -11.57022 -11.48821 -11.43382 -11.23940 -10.64818 -10.51647 -8.30035 -6.43952 0.54842 0.71125 1.20537 1.39612 1.41007 1.46407 1.52749 1.70314 2.06990 2.36360 2.60644 2.87864 3.04168 3.18267 3.24568 3.71618 3.77109 3.79176 3.92258 4.12952 4.14442 4.32433 4.48402 4.52565 4.58742 4.60016 4.67860 4.75119 4.80442 4.84966 4.88307 5.12660 5.15408 5.27128 5.32408 5.38407 5.40553 5.47162 5.67391 6.01147 6.13371 6.46448 6.68698 7.16797 7.25919 8.82667 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.010070 B = 0.004120 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2779.960761 B = 6794.771654 C = 8975.449409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.129 3.871 3 C -0.132 4.132 4 C -0.177 4.177 5 O -0.355 6.355 6 C 0.653 3.347 7 O -0.580 6.580 8 N -0.656 5.656 9 C 0.078 3.922 10 C 0.485 3.515 11 O -0.515 6.515 12 O -0.348 6.348 13 C 0.092 3.908 14 C 0.039 3.961 15 C -0.552 4.552 16 H 0.065 0.935 17 C 0.009 3.991 18 N -0.925 5.925 19 Si 0.974 3.026 20 H -0.266 1.266 21 H -0.278 1.278 22 H -0.265 1.265 23 C -0.069 4.069 24 C 0.219 3.781 25 F -0.154 7.154 26 F -0.146 7.146 27 H 0.051 0.949 28 H 0.090 0.910 29 H 0.050 0.950 30 H 0.082 0.918 31 H 0.102 0.898 32 H 0.066 0.934 33 H 0.054 0.946 34 H 0.091 0.909 35 H 0.073 0.927 36 H 0.437 0.563 37 H 0.050 0.950 38 H 0.071 0.929 39 H 0.008 0.992 40 H -0.004 1.004 41 H 0.268 0.732 42 H 0.202 0.798 43 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.662 0.033 -1.977 22.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.093 3.907 3 C -0.189 4.189 4 C -0.234 4.234 5 O -0.270 6.270 6 C 0.407 3.593 7 O -0.469 6.469 8 N -0.319 5.319 9 C -0.014 4.014 10 C 0.327 3.673 11 O -0.404 6.404 12 O -0.264 6.264 13 C 0.019 3.981 14 C 0.001 3.999 15 C -0.589 4.589 16 H 0.083 0.917 17 C -0.191 4.191 18 N -0.564 5.564 19 Si 0.797 3.203 20 H -0.191 1.191 21 H -0.203 1.203 22 H -0.189 1.189 23 C -0.106 4.106 24 C 0.180 3.820 25 F -0.135 7.135 26 F -0.126 7.126 27 H 0.070 0.930 28 H 0.109 0.891 29 H 0.069 0.931 30 H 0.101 0.899 31 H 0.120 0.880 32 H 0.085 0.915 33 H 0.073 0.927 34 H 0.110 0.890 35 H 0.092 0.908 36 H 0.278 0.722 37 H 0.068 0.932 38 H 0.089 0.911 39 H 0.027 0.973 40 H 0.014 0.986 41 H 0.077 0.923 42 H 0.219 0.781 43 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 22.113 -0.282 -2.494 22.255 hybrid contribution -1.313 -0.025 -0.200 1.329 sum 20.800 -0.308 -2.695 20.976 Atomic orbital electron populations 1.22476 0.95227 1.03114 1.03175 1.22450 0.93454 0.93249 0.81535 1.21879 1.02902 0.89809 1.04342 1.22456 1.02088 1.01798 0.97096 1.86279 1.70912 1.22065 1.47728 1.18188 0.77928 0.81231 0.81949 1.90964 1.40280 1.71057 1.44596 1.43337 1.60428 1.05721 1.22462 1.21438 0.87991 0.81850 1.10151 1.22676 0.88451 0.83600 0.72574 1.90697 1.81349 1.21345 1.46983 1.86490 1.19339 1.39385 1.81157 1.23239 0.74835 0.99326 1.00668 1.18903 0.93021 0.91845 0.96087 1.21334 0.91663 0.94185 1.51748 0.91704 1.25961 1.04443 0.94667 0.93989 1.70096 1.35365 1.01467 1.49459 0.85315 0.77741 0.78216 0.78993 1.19128 1.20322 1.18921 1.25277 0.98327 0.98433 0.88541 1.20495 0.86716 0.83465 0.91284 1.93107 1.82913 1.49115 1.88346 1.93068 1.56263 1.85053 1.78210 0.93007 0.89122 0.93065 0.89947 0.87973 0.91456 0.92669 0.89042 0.90755 0.72156 0.93180 0.91069 0.97333 0.98582 0.92284 0.78076 0.81377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.65 8.37 71.98 0.60 -5.04 16 2 C 0.13 3.24 1.13 -10.79 -0.01 3.23 16 3 C -0.13 -2.23 8.85 71.98 0.64 -1.59 16 4 C -0.18 -4.15 8.37 71.98 0.60 -3.54 16 5 O -0.36 -9.86 9.94 -55.45 -0.55 -10.42 16 6 C 0.65 20.70 7.63 129.79 0.99 21.69 16 7 O -0.58 -22.92 11.16 20.41 0.23 -22.69 16 8 N -0.66 -15.86 5.12 -553.76 -2.84 -18.70 16 9 C 0.08 2.00 2.29 2.86 0.01 2.01 16 10 C 0.49 17.92 6.98 71.24 0.50 18.42 16 11 O -0.51 -20.72 15.21 21.96 0.33 -20.38 16 12 O -0.35 -15.12 9.38 -50.74 -0.48 -15.59 16 13 C 0.09 4.42 5.40 71.98 0.39 4.80 16 14 C 0.04 2.17 5.35 29.85 0.16 2.33 16 15 C -0.55 -32.12 9.11 25.60 0.23 -31.88 16 16 H 0.06 3.62 7.74 -2.91 -0.02 3.59 16 17 C 0.01 0.50 5.46 84.66 0.46 0.96 16 18 N -0.93 -56.07 13.29 21.45 0.28 -55.78 16 19 Si 0.97 44.21 29.54 68.60 2.03 46.24 16 20 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 21 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 22 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 23 C -0.07 -0.86 10.03 30.59 0.31 -0.55 16 24 C 0.22 5.22 5.15 30.59 0.16 5.38 16 25 F -0.15 -4.70 16.07 44.97 0.72 -3.97 16 26 F -0.15 -3.42 17.43 44.97 0.78 -2.64 16 27 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 29 H 0.05 2.01 5.88 -2.39 -0.01 2.00 16 30 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.07 1.17 8.14 -2.39 -0.02 1.16 16 33 H 0.05 1.69 5.88 -2.39 -0.01 1.67 16 34 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.44 6.68 8.94 -92.71 -0.83 5.85 16 37 H 0.05 2.47 8.13 -2.38 -0.02 2.45 16 38 H 0.07 3.22 8.13 -2.39 -0.02 3.20 16 39 H 0.01 0.49 8.14 -2.38 -0.02 0.47 16 40 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 41 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 42 H 0.20 0.32 8.14 -2.39 -0.02 0.30 16 43 H 0.17 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -80.87 375.17 5.77 -75.10 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: 0.22 Total: 12.64 kcal Atomic # 6 Polarization: 11.16 SS G_CDS: 5.03 Total: 16.19 kcal Atomic # 7 Polarization: -71.93 SS G_CDS: -2.55 Total: -74.48 kcal Atomic # 8 Polarization: -68.62 SS G_CDS: -0.47 Total: -69.09 kcal Atomic # 9 Polarization: -8.12 SS G_CDS: 1.51 Total: -6.61 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -80.87 5.77 -75.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870028538.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -179.180 kcal (2) G-P(sol) polarization free energy of solvation -80.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -260.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -254.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds