Wall clock time and date at job start Tue Mar 31 2020 19:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 115.54349 * 2 1 4 4 C 1.53000 * 117.52016 * 214.29363 * 2 1 3 5 5 C 1.52999 * 117.49626 * 145.66042 * 2 1 3 6 6 H 1.08997 * 117.49985 * 215.02361 * 5 2 1 7 7 C 1.52999 * 117.50053 * 0.03055 * 5 2 1 8 8 H 1.09002 * 115.56283 * 37.23276 * 7 5 2 9 9 C 1.53001 * 117.49750 * 251.53885 * 7 5 2 10 10 C 1.53002 * 60.00122 * 252.51260 * 9 7 5 11 11 H 1.09001 * 117.49800 * 252.51607 * 10 9 7 12 12 C 1.52993 * 117.49776 * 107.48992 * 10 9 7 13 13 N 1.46504 * 109.47207 * 113.61684 * 12 10 9 14 14 S 1.65604 * 120.00363 * 162.57224 * 13 12 10 15 15 O 1.42099 * 106.40067 * 178.75042 * 14 13 12 16 16 O 1.42094 * 106.40061 * 311.67229 * 14 13 12 17 17 C 1.76199 * 107.21711 * 65.21130 * 14 13 12 18 18 C 1.37643 * 120.12479 * 246.91001 * 17 14 13 19 19 C 1.38617 * 120.24369 * 179.69922 * 18 17 14 20 20 C 1.38652 * 120.50133 * 0.59856 * 19 18 17 21 21 C 1.37590 * 120.25294 * 359.68059 * 20 19 18 22 22 C 1.40697 * 120.12996 * 67.18181 * 17 14 13 23 23 C 1.41392 * 120.24431 * 0.02562 * 22 17 14 24 24 H 1.08003 * 120.00247 * 325.92039 * 23 22 17 25 25 C 1.39945 * 120.00004 * 145.91376 * 23 22 17 26 26 N 1.30825 * 120.00073 * 352.23569 * 25 23 22 27 27 Si 1.86801 * 120.00048 * 172.23475 * 25 23 22 28 28 H 1.48498 * 109.47158 * 94.98943 * 27 25 23 29 29 H 1.48504 * 109.47167 * 214.98734 * 27 25 23 30 30 H 1.48501 * 109.47138 * 334.98655 * 27 25 23 31 31 H 1.08999 * 109.47475 * 274.33255 * 1 2 3 32 32 H 1.09001 * 109.46959 * 34.33826 * 1 2 3 33 33 H 1.09008 * 109.46947 * 154.33534 * 1 2 3 34 34 H 1.08995 * 117.49494 * 145.03321 * 4 2 1 35 35 H 1.08997 * 117.49787 * 0.02562 * 4 2 1 36 36 H 1.08997 * 117.49891 * 0.02562 * 9 7 5 37 37 H 1.09003 * 117.49216 * 144.99664 * 9 7 5 38 38 H 1.09001 * 109.47187 * 233.61330 * 12 10 9 39 39 H 1.08997 * 109.47342 * 353.61712 * 12 10 9 40 40 H 0.97002 * 119.99294 * 342.56895 * 13 12 10 41 41 H 1.07997 * 119.87483 * 359.97438 * 18 17 14 42 42 H 1.08002 * 119.74614 * 180.29689 * 19 18 17 43 43 H 1.08007 * 119.87405 * 179.70076 * 20 19 18 44 44 H 1.07994 * 120.13370 * 180.02562 * 21 20 19 45 45 H 0.96996 * 120.00322 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0000 0.9835 0.0000 4 6 2.2370 -1.1210 -0.7645 5 6 2.2364 -1.1206 0.7656 6 1 3.1711 -0.8744 1.2694 7 6 1.3588 -2.1559 1.4719 8 1 0.4480 -2.4389 0.9442 9 6 1.3050 -2.1114 3.0003 10 6 2.0638 -3.2367 2.2940 11 1 1.6167 -4.2307 2.3071 12 6 3.5924 -3.1995 2.3468 13 7 4.0817 -4.3359 3.1312 14 16 5.6649 -4.8062 3.0089 15 8 5.8290 -5.8989 3.9023 16 8 5.9530 -4.8878 1.6199 17 6 6.6502 -3.4912 3.6449 18 6 7.4772 -2.7794 2.8059 19 6 8.2488 -1.7404 3.3025 20 6 8.2066 -1.4139 4.6493 21 6 7.3915 -2.1155 5.5075 22 6 6.5990 -3.1684 5.0134 23 6 5.7579 -3.8967 5.8859 24 1 4.8108 -4.2759 5.5315 25 6 6.1527 -4.1264 7.2087 26 7 7.3594 -3.8026 7.5968 27 14 4.9568 -4.8954 8.4203 28 1 5.1798 -6.3626 8.4724 29 1 5.1756 -4.3133 9.7689 30 1 3.5644 -4.6215 7.9829 31 1 -0.3634 0.0776 1.0247 32 1 -0.3633 0.8486 -0.5797 33 1 -0.3633 -0.9264 -0.4451 34 1 3.1721 -0.8750 -1.2675 35 1 1.6121 -1.8586 -1.2680 36 1 1.8945 -1.3444 3.5026 37 1 0.3585 -2.3648 3.4781 38 1 3.9924 -3.2577 1.3345 39 1 3.9173 -2.2694 2.8129 40 1 3.4784 -4.8128 3.7224 41 1 7.5218 -3.0285 1.7560 42 1 8.8913 -1.1841 2.6360 43 1 8.8157 -0.6055 5.0263 44 1 7.3599 -1.8594 6.5561 45 1 7.6332 -3.9621 8.5136 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885620580.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:15 Heat of formation + Delta-G solvation = -37.864887 kcal Electronic energy + Delta-G solvation = -27133.131284 eV Core-core repulsion = 23435.495725 eV Total energy + Delta-G solvation = -3697.635559 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.134 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.04153 -39.39078 -38.05023 -37.31587 -36.66730 -35.63804 -34.85342 -32.01791 -31.39115 -29.30161 -27.44444 -27.17019 -24.54624 -23.45709 -22.96066 -22.55763 -21.65567 -20.29202 -19.69989 -19.48548 -18.45844 -17.78129 -17.42428 -17.07488 -16.63101 -16.07251 -16.03799 -15.42756 -15.17620 -14.98226 -14.90837 -14.46694 -14.41820 -13.94586 -13.77876 -13.70498 -13.27020 -13.24104 -13.05868 -12.97686 -12.94111 -12.84991 -12.79920 -12.51873 -12.30051 -12.21625 -12.13458 -11.94703 -11.73085 -11.64039 -11.38074 -11.19618 -11.07238 -10.61252 -10.25216 -10.06830 -9.84770 -9.39112 -8.76146 -6.60958 -0.17305 0.51010 0.96187 1.36706 1.49057 1.51710 2.17333 2.31298 2.61391 2.67377 2.98467 3.25505 3.44891 3.54888 3.76565 3.90127 3.95477 4.06808 4.20816 4.32066 4.35905 4.40576 4.41532 4.48850 4.53169 4.59785 4.69389 4.82948 4.93542 4.97362 5.01193 5.01756 5.05321 5.10541 5.12891 5.27263 5.28753 5.29672 5.34835 5.44155 5.51645 5.51932 5.68935 5.81792 5.97548 6.08254 6.24877 6.46438 6.70804 6.81887 8.21820 Molecular weight = 335.13amu Principal moments of inertia in cm(-1) A = 0.011623 B = 0.004051 C = 0.003728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2408.378536 B = 6909.554642 C = 7509.383554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.145 4.145 3 H 0.103 0.897 4 C -0.174 4.174 5 C -0.142 4.142 6 H 0.092 0.908 7 C -0.097 4.097 8 H 0.123 0.877 9 C -0.166 4.166 10 C -0.163 4.163 11 H 0.122 0.878 12 C 0.154 3.846 13 N -1.108 6.108 14 S 2.719 3.281 15 O -0.997 6.997 16 O -1.009 7.009 17 C -0.787 4.787 18 C -0.019 4.019 19 C -0.245 4.245 20 C -0.075 4.075 21 C -0.180 4.180 22 C 0.166 3.834 23 C -0.480 4.480 24 H 0.093 0.907 25 C 0.039 3.961 26 N -0.818 5.818 27 Si 0.975 3.025 28 H -0.269 1.269 29 H -0.259 1.259 30 H -0.243 1.243 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.092 0.908 35 H 0.102 0.898 36 H 0.088 0.912 37 H 0.112 0.888 38 H 0.074 0.926 39 H 0.056 0.944 40 H 0.421 0.579 41 H 0.123 0.877 42 H 0.129 0.871 43 H 0.124 0.876 44 H 0.110 0.890 45 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.481 6.377 -8.097 16.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.163 4.163 3 H 0.121 0.879 4 C -0.211 4.211 5 C -0.160 4.160 6 H 0.110 0.890 7 C -0.116 4.116 8 H 0.140 0.860 9 C -0.203 4.203 10 C -0.182 4.182 11 H 0.140 0.860 12 C 0.028 3.972 13 N -0.868 5.868 14 S 2.815 3.185 15 O -0.987 6.987 16 O -0.999 6.999 17 C -0.881 4.881 18 C -0.039 4.039 19 C -0.265 4.265 20 C -0.094 4.094 21 C -0.200 4.200 22 C 0.162 3.838 23 C -0.509 4.509 24 H 0.111 0.889 25 C -0.178 4.178 26 N -0.443 5.443 27 Si 0.794 3.206 28 H -0.194 1.194 29 H -0.184 1.184 30 H -0.166 1.166 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.111 0.889 35 H 0.120 0.880 36 H 0.106 0.894 37 H 0.130 0.870 38 H 0.092 0.908 39 H 0.074 0.926 40 H 0.257 0.743 41 H 0.141 0.859 42 H 0.147 0.853 43 H 0.142 0.858 44 H 0.128 0.872 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -12.916 5.656 -8.378 16.401 hybrid contribution 0.278 0.099 1.319 1.352 sum -12.638 5.755 -7.059 15.578 Atomic orbital electron populations 1.21340 0.91775 1.02280 1.02131 1.22428 0.96258 0.94028 1.03555 0.87861 1.23167 1.02845 1.01758 0.93321 1.21876 1.00170 0.99767 0.94195 0.89027 1.21810 0.99713 0.97019 0.93022 0.85959 1.23190 1.02451 1.00179 0.94443 1.22487 0.92112 0.96494 1.07140 0.85977 1.20791 0.94216 0.87512 0.94644 1.55274 1.27969 1.45305 1.58272 1.00375 0.72839 0.73499 0.71781 1.93494 1.85657 1.53032 1.66536 1.93420 1.85015 1.87423 1.34089 1.30279 1.25511 1.27818 1.04506 1.20606 0.92496 0.92945 0.97818 1.20923 1.06766 1.03006 0.95811 1.21264 0.96265 0.97997 0.93878 1.21505 1.01716 0.97570 0.99243 1.17319 0.88882 0.88301 0.89298 1.20076 1.05254 1.29353 0.96216 0.88885 1.26759 0.96961 0.93864 1.00208 1.69807 1.18356 1.36102 1.19992 0.85286 0.79555 0.78710 0.77000 1.19446 1.18351 1.16578 0.92002 0.91576 0.92133 0.88912 0.87987 0.89363 0.86987 0.90813 0.92556 0.74329 0.85937 0.85315 0.85832 0.87246 0.89603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.60 9.08 71.98 0.65 -0.95 16 2 C -0.14 -2.45 6.41 -10.79 -0.07 -2.52 16 3 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 4 C -0.17 -3.18 9.90 30.60 0.30 -2.87 16 5 C -0.14 -2.91 5.21 -10.79 -0.06 -2.96 16 6 H 0.09 2.18 7.16 -2.39 -0.02 2.16 16 7 C -0.10 -1.85 5.13 -10.79 -0.06 -1.91 16 8 H 0.12 1.93 7.30 -2.39 -0.02 1.91 16 9 C -0.17 -3.34 9.90 30.60 0.30 -3.04 16 10 C -0.16 -3.71 5.84 -10.79 -0.06 -3.78 16 11 H 0.12 2.51 8.14 -2.39 -0.02 2.49 16 12 C 0.15 4.62 5.30 86.38 0.46 5.08 16 13 N -1.11 -38.42 5.23 -187.49 -0.98 -39.40 16 14 S 2.72 120.50 4.99 -56.49 -0.28 120.22 16 15 O -1.00 -50.79 16.48 -128.00 -2.11 -52.90 16 16 O -1.01 -46.13 16.40 -128.00 -2.10 -48.23 16 17 C -0.79 -38.04 5.95 22.73 0.14 -37.90 16 18 C -0.02 -0.85 9.54 22.22 0.21 -0.64 16 19 C -0.25 -10.28 10.05 22.46 0.23 -10.05 16 20 C -0.08 -3.30 10.02 22.22 0.22 -3.08 16 21 C -0.18 -9.04 8.63 22.73 0.20 -8.84 16 22 C 0.17 8.63 5.49 -21.29 -0.12 8.51 16 23 C -0.48 -24.60 7.40 23.46 0.17 -24.43 16 24 H 0.09 4.43 6.16 -2.91 -0.02 4.41 16 25 C 0.04 1.91 5.28 85.26 0.45 2.36 16 26 N -0.82 -41.69 11.06 21.83 0.24 -41.45 16 27 Si 0.97 37.33 29.57 68.60 2.03 39.36 16 28 H -0.27 -10.50 7.11 99.48 0.71 -9.79 16 29 H -0.26 -9.21 7.11 99.48 0.71 -8.50 16 30 H -0.24 -8.65 7.11 99.48 0.71 -7.94 16 31 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.06 0.76 7.43 -2.38 -0.02 0.74 16 34 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.10 1.68 8.05 -2.39 -0.02 1.66 16 36 H 0.09 1.99 8.04 -2.39 -0.02 1.97 16 37 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.07 2.27 7.66 -2.39 -0.02 2.25 16 39 H 0.06 1.77 7.49 -2.39 -0.02 1.75 16 40 H 0.42 12.94 8.51 -96.74 -0.82 12.12 16 41 H 0.12 5.03 7.32 -2.91 -0.02 5.01 16 42 H 0.13 4.47 8.06 -2.91 -0.02 4.44 16 43 H 0.12 4.57 8.06 -2.91 -0.02 4.54 16 44 H 0.11 5.62 6.54 -2.91 -0.02 5.60 16 45 H 0.29 13.45 8.30 -92.71 -0.77 12.68 16 Total: -1.00 -65.11 379.07 -0.05 -65.16 By element: Atomic # 1 Polarization: 44.09 SS G_CDS: 0.18 Total: 44.27 kcal Atomic # 6 Polarization: -90.00 SS G_CDS: 2.97 Total: -87.03 kcal Atomic # 7 Polarization: -80.11 SS G_CDS: -0.74 Total: -80.85 kcal Atomic # 8 Polarization: -96.92 SS G_CDS: -4.21 Total: -101.13 kcal Atomic # 14 Polarization: 37.33 SS G_CDS: 2.03 Total: 39.36 kcal Atomic # 16 Polarization: 120.50 SS G_CDS: -0.28 Total: 120.22 kcal Total: -65.11 -0.05 -65.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885620580.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.298 kcal (2) G-P(sol) polarization free energy of solvation -65.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds