Wall clock time and date at job start Tue Mar 31 2020 19:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 115.54829 * 2 1 4 4 C 1.53000 * 117.51753 * 214.29969 * 2 1 3 5 5 C 1.53001 * 117.49723 * 145.67073 * 2 1 3 6 6 H 1.09004 * 117.49400 * 215.02585 * 5 2 1 7 7 C 1.52993 * 117.49941 * 0.02562 * 5 2 1 8 8 H 1.09004 * 115.55360 * 34.33243 * 7 5 2 9 9 C 1.53002 * 117.51850 * 248.63153 * 7 5 2 10 10 C 1.52998 * 60.00106 * 252.51777 * 9 7 5 11 11 H 1.09002 * 117.51900 * 107.48004 * 10 9 7 12 12 C 1.52999 * 117.50214 * 252.51201 * 10 9 7 13 13 N 1.46506 * 109.46836 * 243.61872 * 12 10 9 14 14 S 1.65606 * 119.99552 * 164.99875 * 13 12 10 15 15 O 1.42100 * 106.40145 * 311.45888 * 14 13 12 16 16 O 1.42100 * 106.39961 * 178.54384 * 14 13 12 17 17 C 1.76195 * 107.21886 * 65.00048 * 14 13 12 18 18 C 1.38632 * 119.75121 * 90.00213 * 17 14 13 19 19 C 1.37614 * 120.25306 * 179.97438 * 18 17 14 20 20 C 1.40718 * 119.74177 * 359.97438 * 19 18 17 21 21 C 1.41392 * 120.24251 * 179.72664 * 20 19 18 22 22 H 1.08005 * 120.00378 * 335.77438 * 21 20 19 23 23 C 1.39945 * 120.00078 * 155.78078 * 21 20 19 24 24 N 1.30830 * 119.99741 * 341.79352 * 23 21 20 25 25 Si 1.86803 * 120.00422 * 161.80017 * 23 21 20 26 26 H 1.48500 * 109.47085 * 59.99278 * 25 23 21 27 27 H 1.48497 * 109.47246 * 179.97438 * 25 23 21 28 28 H 1.48507 * 109.46882 * 299.99535 * 25 23 21 29 29 C 1.40715 * 119.51278 * 0.02562 * 20 19 18 30 30 C 1.37619 * 119.74329 * 359.97438 * 29 20 19 31 31 H 1.08998 * 109.47318 * 274.33054 * 1 2 3 32 32 H 1.09002 * 109.47104 * 34.33309 * 1 2 3 33 33 H 1.09002 * 109.47097 * 154.32901 * 1 2 3 34 34 H 1.09000 * 117.49560 * 145.03067 * 4 2 1 35 35 H 1.09001 * 117.49864 * 0.02562 * 4 2 1 36 36 H 1.09004 * 117.50249 * 145.02999 * 9 7 5 37 37 H 1.08994 * 117.50104 * 0.02562 * 9 7 5 38 38 H 1.08995 * 109.47557 * 123.62085 * 12 10 9 39 39 H 1.09002 * 109.47139 * 3.61705 * 12 10 9 40 40 H 0.96988 * 120.00343 * 345.00232 * 13 12 10 41 41 H 1.08005 * 119.87557 * 359.94883 * 18 17 14 42 42 H 1.07998 * 120.13144 * 180.02562 * 19 18 17 43 43 H 0.97006 * 119.99913 * 180.02562 * 24 23 21 44 44 H 1.07997 * 120.13020 * 179.97438 * 29 20 19 45 45 H 1.08003 * 119.87305 * 179.97438 * 30 29 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2369 -1.1209 -0.7646 5 6 2.2365 -1.1208 0.7654 6 1 3.1712 -0.8745 1.2692 7 6 1.3589 -2.1560 1.4716 8 1 0.4242 -2.4023 0.9677 9 6 1.3578 -2.1561 3.0016 10 6 2.0653 -3.2767 2.2371 11 1 3.1553 -3.2765 2.2375 12 6 1.4057 -4.6573 2.2365 13 7 2.2816 -5.6171 2.9132 14 16 1.6862 -7.0863 3.3924 15 8 0.4719 -6.8216 4.0815 16 8 2.7742 -7.7888 3.9770 17 6 1.2478 -7.9723 1.9340 18 6 2.1852 -8.7841 1.3142 19 6 1.8538 -9.4811 0.1749 20 6 0.5573 -9.3679 -0.3604 21 6 0.2071 -10.0749 -1.5337 22 1 0.9740 -10.3752 -2.2325 23 6 -1.1332 -10.3854 -1.7898 24 7 -2.0091 -10.3534 -0.8185 25 14 -1.6717 -10.8458 -3.5183 26 1 -0.9322 -12.0549 -3.9615 27 1 -3.1296 -11.1279 -3.5239 28 1 -1.3811 -9.7210 -4.4433 29 6 -0.3861 -8.5411 0.2771 30 6 -0.0324 -7.8533 1.4154 31 1 -0.3634 0.0776 1.0247 32 1 -0.3633 0.8486 -0.5796 33 1 -0.3633 -0.9262 -0.4452 34 1 3.1721 -0.8749 -1.2676 35 1 1.6120 -1.8585 -1.2683 36 1 0.4225 -2.4024 3.5043 37 1 1.9822 -1.4182 3.5054 38 1 1.2386 -4.9798 1.2088 39 1 0.4513 -4.6042 2.7604 40 1 3.2101 -5.3922 3.0805 41 1 3.1797 -8.8694 1.7269 42 1 2.5855 -10.1133 -0.3060 43 1 -2.9381 -10.5690 -0.9959 44 1 -1.3838 -8.4465 -0.1254 45 1 -0.7547 -7.2177 1.9061 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646177152.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:54 Heat of formation + Delta-G solvation = -28.394908 kcal Electronic energy + Delta-G solvation = -26010.287471 eV Core-core repulsion = 22313.062561 eV Total energy + Delta-G solvation = -3697.224910 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.134 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -39.18512 -37.57177 -36.71837 -36.37399 -35.10394 -34.04721 -33.76553 -30.25761 -29.46598 -28.72032 -26.31917 -25.81348 -23.62961 -21.63365 -21.53362 -21.14595 -20.90690 -19.51085 -18.71288 -17.61507 -17.05904 -16.66012 -15.94200 -15.88356 -15.53110 -15.00917 -14.21742 -14.16383 -13.90437 -13.81744 -13.37427 -13.27182 -13.20151 -12.80280 -12.64233 -12.42641 -12.19342 -11.90605 -11.73614 -11.68279 -11.45193 -11.40319 -11.33790 -11.28783 -11.23315 -11.08121 -11.06491 -10.87324 -10.60162 -10.43894 -9.95614 -9.74360 -9.61957 -9.48425 -9.40888 -8.97409 -7.96154 -7.70346 -7.14363 -4.80232 1.27265 2.26394 2.87428 2.89139 2.92121 2.94010 3.27833 3.65574 3.75896 3.96641 4.21917 4.30043 4.52764 4.55946 4.65286 4.85028 4.99231 5.07214 5.09943 5.15503 5.24840 5.26552 5.38620 5.52925 5.60871 5.63195 5.65196 5.73738 5.84052 5.88801 5.97662 6.02657 6.08091 6.09898 6.12365 6.15984 6.31288 6.67956 6.71135 6.91255 7.05231 7.31313 7.35543 7.43110 7.63404 7.76621 7.96970 8.31525 8.51157 8.65111 9.77278 Molecular weight = 335.13amu Principal moments of inertia in cm(-1) A = 0.009261 B = 0.003334 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3022.726108 B = 8396.587314 C =10549.757006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.152 4.152 3 H 0.100 0.900 4 C -0.173 4.173 5 C -0.119 4.119 6 H 0.102 0.898 7 C -0.115 4.115 8 H 0.109 0.891 9 C -0.171 4.171 10 C -0.148 4.148 11 H 0.110 0.890 12 C 0.152 3.848 13 N -1.124 6.124 14 S 2.695 3.305 15 O -0.984 6.984 16 O -0.987 6.987 17 C -0.788 4.788 18 C 0.003 3.997 19 C -0.240 4.240 20 C 0.140 3.860 21 C -0.437 4.437 22 H 0.087 0.913 23 C 0.073 3.927 24 N -0.764 5.764 25 Si 0.917 3.083 26 H -0.261 1.261 27 H -0.274 1.274 28 H -0.259 1.259 29 C -0.184 4.184 30 C -0.017 4.017 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.092 0.908 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.093 0.907 38 H 0.071 0.929 39 H 0.077 0.923 40 H 0.409 0.591 41 H 0.104 0.896 42 H 0.100 0.900 43 H 0.290 0.710 44 H 0.122 0.878 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.853 16.111 -0.444 16.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.170 4.170 3 H 0.119 0.881 4 C -0.210 4.210 5 C -0.137 4.137 6 H 0.120 0.880 7 C -0.134 4.134 8 H 0.127 0.873 9 C -0.208 4.208 10 C -0.168 4.168 11 H 0.128 0.872 12 C 0.026 3.974 13 N -0.880 5.880 14 S 2.793 3.207 15 O -0.975 6.975 16 O -0.977 6.977 17 C -0.884 4.884 18 C -0.017 4.017 19 C -0.261 4.261 20 C 0.137 3.863 21 C -0.464 4.464 22 H 0.105 0.895 23 C -0.150 4.150 24 N -0.387 5.387 25 Si 0.740 3.260 26 H -0.186 1.186 27 H -0.199 1.199 28 H -0.184 1.184 29 C -0.204 4.204 30 C -0.037 4.037 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.110 0.890 35 H 0.116 0.884 36 H 0.117 0.883 37 H 0.112 0.888 38 H 0.089 0.911 39 H 0.095 0.905 40 H 0.242 0.758 41 H 0.122 0.878 42 H 0.118 0.882 43 H 0.101 0.899 44 H 0.140 0.860 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 3.310 15.758 0.511 16.110 hybrid contribution 0.091 -0.319 -1.433 1.471 sum 3.401 15.439 -0.922 15.836 Atomic orbital electron populations 1.21351 0.92783 1.01874 1.01942 1.22347 0.95595 0.94148 1.04891 0.88138 1.23124 1.02555 1.01424 0.93926 1.21795 0.99765 0.98543 0.93581 0.88024 1.21817 1.00129 0.97790 0.93621 0.87278 1.23169 1.02783 1.01173 0.93636 1.22531 0.99299 0.89938 1.05031 0.87235 1.20748 0.92663 0.86414 0.97607 1.55708 1.21457 1.33707 1.77166 1.01164 0.72733 0.72033 0.74742 1.93481 1.46716 1.84926 1.72337 1.93489 1.55264 1.71916 1.77054 1.29144 1.04054 1.26803 1.28404 1.20156 0.95834 0.92263 0.93443 1.21024 0.98349 1.07138 0.99542 1.17840 0.90912 0.87301 0.90284 1.19910 0.92966 1.28873 1.04634 0.89484 1.26142 0.96398 0.93061 0.99390 1.69823 1.04695 1.30972 1.33175 0.86199 0.78223 0.80242 0.81299 1.18558 1.19885 1.18362 1.21330 1.00761 1.00313 0.97992 1.20258 0.92591 0.96299 0.94554 0.92007 0.92506 0.92318 0.88953 0.88437 0.88309 0.88816 0.91055 0.90480 0.75792 0.87824 0.88212 0.89877 0.86047 0.87928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.96 9.05 37.16 0.34 -0.62 16 2 C -0.15 -1.23 6.41 -90.62 -0.58 -1.81 16 3 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 4 C -0.17 -1.51 9.90 -26.73 -0.26 -1.77 16 5 C -0.12 -1.05 5.85 -90.62 -0.53 -1.58 16 6 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 7 C -0.11 -1.11 4.90 -90.62 -0.44 -1.56 16 8 H 0.11 1.09 7.19 -51.93 -0.37 0.71 16 9 C -0.17 -1.63 9.90 -26.73 -0.26 -1.90 16 10 C -0.15 -1.58 5.62 -90.62 -0.51 -2.09 16 11 H 0.11 1.08 7.98 -51.93 -0.41 0.67 16 12 C 0.15 2.03 6.50 -4.04 -0.03 2.00 16 13 N -1.12 -16.43 6.00 -10.61 -0.06 -16.49 16 14 S 2.69 51.86 5.73 -107.50 -0.62 51.25 16 15 O -0.98 -21.19 16.73 -57.17 -0.96 -22.15 16 16 O -0.99 -21.01 17.26 -57.17 -0.99 -22.00 16 17 C -0.79 -17.30 5.97 -39.29 -0.23 -17.54 16 18 C 0.00 0.07 9.49 -39.66 -0.38 -0.31 16 19 C -0.24 -5.68 9.80 -38.87 -0.38 -6.06 16 20 C 0.14 3.54 5.57 -106.82 -0.60 2.95 16 21 C -0.44 -10.67 9.05 -37.74 -0.34 -11.01 16 22 H 0.09 2.00 7.91 -52.48 -0.42 1.59 16 23 C 0.07 1.67 5.13 -17.34 -0.09 1.58 16 24 N -0.76 -18.29 10.98 55.55 0.61 -17.68 16 25 Si 0.92 16.91 29.60 -169.99 -5.03 11.88 16 26 H -0.26 -4.77 7.11 56.52 0.40 -4.37 16 27 H -0.27 -4.92 7.11 56.52 0.40 -4.52 16 28 H -0.26 -4.74 7.11 56.52 0.40 -4.33 16 29 C -0.18 -4.56 8.71 -38.87 -0.34 -4.90 16 30 C -0.02 -0.38 9.49 -39.66 -0.38 -0.76 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.48 7.40 -51.93 -0.38 0.10 16 34 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.10 0.90 8.05 -51.93 -0.42 0.48 16 36 H 0.10 0.96 8.03 -51.93 -0.42 0.54 16 37 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.08 1.06 7.48 -51.93 -0.39 0.67 16 40 H 0.41 4.98 8.54 -34.47 -0.29 4.68 16 41 H 0.10 2.10 7.60 -52.48 -0.40 1.70 16 42 H 0.10 2.18 8.06 -52.49 -0.42 1.75 16 43 H 0.29 6.23 8.30 -40.82 -0.34 5.89 16 44 H 0.12 3.04 6.17 -52.49 -0.32 2.72 16 45 H 0.10 2.17 7.60 -52.48 -0.40 1.77 16 LS Contribution 386.25 15.07 5.82 5.82 Total: -1.00 -29.70 386.25 -12.98 -42.69 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: -6.74 Total: 12.05 kcal Atomic # 6 Polarization: -40.36 SS G_CDS: -5.02 Total: -45.37 kcal Atomic # 7 Polarization: -34.72 SS G_CDS: 0.55 Total: -34.17 kcal Atomic # 8 Polarization: -42.20 SS G_CDS: -1.94 Total: -44.14 kcal Atomic # 14 Polarization: 16.91 SS G_CDS: -5.03 Total: 11.88 kcal Atomic # 16 Polarization: 51.86 SS G_CDS: -0.62 Total: 51.25 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -29.70 -12.98 -42.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646177152.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.292 kcal (2) G-P(sol) polarization free energy of solvation -29.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds