Wall clock time and date at job start Tue Mar 31 2020 19:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 115.54829 * 2 1 4 4 C 1.53000 * 117.51753 * 214.29969 * 2 1 3 5 5 C 1.53001 * 117.49723 * 145.67073 * 2 1 3 6 6 H 1.09004 * 117.49400 * 215.02585 * 5 2 1 7 7 C 1.52993 * 117.49941 * 0.02562 * 5 2 1 8 8 H 1.09004 * 115.55360 * 34.33243 * 7 5 2 9 9 C 1.53002 * 117.51850 * 248.63153 * 7 5 2 10 10 C 1.52998 * 60.00106 * 252.51777 * 9 7 5 11 11 H 1.09002 * 117.51900 * 107.48004 * 10 9 7 12 12 C 1.52999 * 117.50214 * 252.51201 * 10 9 7 13 13 N 1.46506 * 109.46836 * 243.61872 * 12 10 9 14 14 S 1.65606 * 119.99552 * 164.99875 * 13 12 10 15 15 O 1.42100 * 106.40145 * 311.45888 * 14 13 12 16 16 O 1.42100 * 106.39961 * 178.54384 * 14 13 12 17 17 C 1.76195 * 107.21886 * 65.00048 * 14 13 12 18 18 C 1.38632 * 119.75121 * 90.00213 * 17 14 13 19 19 C 1.37614 * 120.25306 * 179.97438 * 18 17 14 20 20 C 1.40718 * 119.74177 * 359.97438 * 19 18 17 21 21 C 1.41392 * 120.24251 * 179.72664 * 20 19 18 22 22 H 1.08005 * 120.00378 * 335.77438 * 21 20 19 23 23 C 1.39945 * 120.00078 * 155.78078 * 21 20 19 24 24 N 1.30830 * 119.99741 * 341.79352 * 23 21 20 25 25 Si 1.86803 * 120.00422 * 161.80017 * 23 21 20 26 26 H 1.48500 * 109.47085 * 59.99278 * 25 23 21 27 27 H 1.48497 * 109.47246 * 179.97438 * 25 23 21 28 28 H 1.48507 * 109.46882 * 299.99535 * 25 23 21 29 29 C 1.40715 * 119.51278 * 0.02562 * 20 19 18 30 30 C 1.37619 * 119.74329 * 359.97438 * 29 20 19 31 31 H 1.08998 * 109.47318 * 274.33054 * 1 2 3 32 32 H 1.09002 * 109.47104 * 34.33309 * 1 2 3 33 33 H 1.09002 * 109.47097 * 154.32901 * 1 2 3 34 34 H 1.09000 * 117.49560 * 145.03067 * 4 2 1 35 35 H 1.09001 * 117.49864 * 0.02562 * 4 2 1 36 36 H 1.09004 * 117.50249 * 145.02999 * 9 7 5 37 37 H 1.08994 * 117.50104 * 0.02562 * 9 7 5 38 38 H 1.08995 * 109.47557 * 123.62085 * 12 10 9 39 39 H 1.09002 * 109.47139 * 3.61705 * 12 10 9 40 40 H 0.96988 * 120.00343 * 345.00232 * 13 12 10 41 41 H 1.08005 * 119.87557 * 359.94883 * 18 17 14 42 42 H 1.07998 * 120.13144 * 180.02562 * 19 18 17 43 43 H 0.97006 * 119.99913 * 180.02562 * 24 23 21 44 44 H 1.07997 * 120.13020 * 179.97438 * 29 20 19 45 45 H 1.08003 * 119.87305 * 179.97438 * 30 29 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2369 -1.1209 -0.7646 5 6 2.2365 -1.1208 0.7654 6 1 3.1712 -0.8745 1.2692 7 6 1.3589 -2.1560 1.4716 8 1 0.4242 -2.4023 0.9677 9 6 1.3578 -2.1561 3.0016 10 6 2.0653 -3.2767 2.2371 11 1 3.1553 -3.2765 2.2375 12 6 1.4057 -4.6573 2.2365 13 7 2.2816 -5.6171 2.9132 14 16 1.6862 -7.0863 3.3924 15 8 0.4719 -6.8216 4.0815 16 8 2.7742 -7.7888 3.9770 17 6 1.2478 -7.9723 1.9340 18 6 2.1852 -8.7841 1.3142 19 6 1.8538 -9.4811 0.1749 20 6 0.5573 -9.3679 -0.3604 21 6 0.2071 -10.0749 -1.5337 22 1 0.9740 -10.3752 -2.2325 23 6 -1.1332 -10.3854 -1.7898 24 7 -2.0091 -10.3534 -0.8185 25 14 -1.6717 -10.8458 -3.5183 26 1 -0.9322 -12.0549 -3.9615 27 1 -3.1296 -11.1279 -3.5239 28 1 -1.3811 -9.7210 -4.4433 29 6 -0.3861 -8.5411 0.2771 30 6 -0.0324 -7.8533 1.4154 31 1 -0.3634 0.0776 1.0247 32 1 -0.3633 0.8486 -0.5796 33 1 -0.3633 -0.9262 -0.4452 34 1 3.1721 -0.8749 -1.2676 35 1 1.6120 -1.8585 -1.2683 36 1 0.4225 -2.4024 3.5043 37 1 1.9822 -1.4182 3.5054 38 1 1.2386 -4.9798 1.2088 39 1 0.4513 -4.6042 2.7604 40 1 3.2101 -5.3922 3.0805 41 1 3.1797 -8.8694 1.7269 42 1 2.5855 -10.1133 -0.3060 43 1 -2.9381 -10.5690 -0.9959 44 1 -1.3838 -8.4465 -0.1254 45 1 -0.7547 -7.2177 1.9061 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646177152.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:53 Heat of formation + Delta-G solvation = -44.388973 kcal Electronic energy + Delta-G solvation = -26010.981025 eV Core-core repulsion = 22313.062561 eV Total energy + Delta-G solvation = -3697.918464 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.94070 -39.38064 -38.16235 -37.44660 -36.78486 -35.81015 -34.88704 -32.07165 -31.29475 -29.35585 -27.62439 -27.39558 -24.36595 -23.32146 -22.95738 -22.31875 -21.84198 -20.45210 -19.97596 -19.42131 -18.58693 -18.18301 -17.24144 -17.19598 -16.62640 -16.21258 -15.83964 -15.55922 -15.09743 -15.00471 -14.82878 -14.66626 -14.11804 -13.98185 -13.91582 -13.62728 -13.51513 -13.36713 -13.16236 -13.10307 -13.01007 -12.95829 -12.88196 -12.55532 -12.33913 -12.26038 -12.04576 -11.96545 -11.77948 -11.56307 -11.49796 -11.25252 -11.18888 -10.66034 -10.24562 -10.14098 -9.79253 -9.55220 -8.87693 -6.65423 -0.30187 0.48782 1.05436 1.35611 1.44225 1.50322 2.11041 2.23451 2.51088 2.62190 2.93937 3.22669 3.46145 3.53074 3.67418 3.85179 3.88596 4.06260 4.26534 4.28538 4.31824 4.32725 4.40137 4.41417 4.49989 4.52720 4.81193 4.86232 4.92084 4.95093 4.98024 4.99040 5.00981 5.03614 5.11738 5.23820 5.24071 5.27515 5.32678 5.43452 5.49676 5.52162 5.59450 5.76028 5.92655 6.15092 6.22658 6.48560 6.67942 6.80915 8.07518 Molecular weight = 335.13amu Principal moments of inertia in cm(-1) A = 0.009261 B = 0.003334 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3022.726108 B = 8396.587314 C =10549.757006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.146 4.146 3 H 0.113 0.887 4 C -0.181 4.181 5 C -0.122 4.122 6 H 0.111 0.889 7 C -0.112 4.112 8 H 0.102 0.898 9 C -0.163 4.163 10 C -0.155 4.155 11 H 0.122 0.878 12 C 0.146 3.854 13 N -1.105 6.105 14 S 2.727 3.273 15 O -1.005 7.005 16 O -1.003 7.003 17 C -0.798 4.798 18 C -0.002 4.002 19 C -0.259 4.259 20 C 0.112 3.888 21 C -0.467 4.467 22 H 0.093 0.907 23 C 0.035 3.965 24 N -0.798 5.798 25 Si 0.992 3.008 26 H -0.255 1.255 27 H -0.265 1.265 28 H -0.255 1.255 29 C -0.207 4.207 30 C -0.020 4.020 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.049 0.951 34 H 0.101 0.899 35 H 0.086 0.914 36 H 0.096 0.904 37 H 0.109 0.891 38 H 0.064 0.936 39 H 0.072 0.928 40 H 0.424 0.576 41 H 0.125 0.875 42 H 0.111 0.889 43 H 0.299 0.701 44 H 0.111 0.889 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.552 17.555 -0.740 18.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.164 4.164 3 H 0.131 0.869 4 C -0.218 4.218 5 C -0.141 4.141 6 H 0.129 0.871 7 C -0.131 4.131 8 H 0.120 0.880 9 C -0.200 4.200 10 C -0.174 4.174 11 H 0.140 0.860 12 C 0.020 3.980 13 N -0.867 5.867 14 S 2.822 3.178 15 O -0.995 6.995 16 O -0.994 6.994 17 C -0.891 4.891 18 C -0.021 4.021 19 C -0.279 4.279 20 C 0.109 3.891 21 C -0.494 4.494 22 H 0.111 0.889 23 C -0.185 4.185 24 N -0.421 5.421 25 Si 0.811 3.189 26 H -0.179 1.179 27 H -0.189 1.189 28 H -0.179 1.179 29 C -0.228 4.228 30 C -0.040 4.040 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.068 0.932 34 H 0.119 0.881 35 H 0.105 0.895 36 H 0.114 0.886 37 H 0.128 0.872 38 H 0.082 0.918 39 H 0.091 0.909 40 H 0.261 0.739 41 H 0.143 0.857 42 H 0.129 0.871 43 H 0.110 0.890 44 H 0.129 0.871 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 4.019 17.182 0.206 17.647 hybrid contribution -0.095 -0.681 -1.241 1.419 sum 3.923 16.501 -1.035 16.993 Atomic orbital electron populations 1.21369 0.92798 1.01855 1.02083 1.22430 0.95643 0.94442 1.03925 0.86894 1.23156 1.02973 1.01688 0.93973 1.21827 1.00097 0.98638 0.93492 0.87091 1.21826 0.99848 0.97414 0.93977 0.87997 1.23239 1.02669 1.00578 0.93540 1.22455 0.99862 0.88535 1.06590 0.85963 1.20883 0.92611 0.87617 0.96855 1.55235 1.22545 1.31995 1.76890 1.00207 0.71919 0.72266 0.73365 1.93456 1.48126 1.85381 1.72515 1.93460 1.55555 1.73194 1.77151 1.29638 1.03560 1.26998 1.28861 1.20455 0.96918 0.91723 0.93039 1.21263 0.98298 1.07941 1.00386 1.18193 0.91771 0.88025 0.91149 1.20218 0.94295 1.29879 1.04991 0.88946 1.27040 0.95764 0.92318 1.03379 1.69863 1.05394 1.31500 1.35334 0.85086 0.78092 0.79984 0.75708 1.17936 1.18891 1.17933 1.21354 1.00570 1.01576 0.99273 1.20450 0.93459 0.95975 0.94097 0.91932 0.91569 0.93192 0.88098 0.89513 0.88570 0.87245 0.91798 0.90936 0.73915 0.85668 0.87095 0.89016 0.87140 0.86698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.78 9.05 71.98 0.65 -1.13 16 2 C -0.15 -2.11 6.41 -10.79 -0.07 -2.18 16 3 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 4 C -0.18 -2.91 9.90 30.59 0.30 -2.60 16 5 C -0.12 -1.93 5.85 -10.79 -0.06 -1.99 16 6 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 7 C -0.11 -2.00 4.90 -10.79 -0.05 -2.05 16 8 H 0.10 1.97 7.19 -2.39 -0.02 1.95 16 9 C -0.16 -2.79 9.90 30.59 0.30 -2.48 16 10 C -0.15 -3.02 5.62 -10.79 -0.06 -3.08 16 11 H 0.12 2.09 7.98 -2.39 -0.02 2.07 16 12 C 0.15 3.75 6.50 86.38 0.56 4.31 16 13 N -1.11 -30.55 6.00 -187.48 -1.12 -31.68 16 14 S 2.73 102.18 5.73 -56.49 -0.32 101.85 16 15 O -1.00 -42.43 16.73 -128.00 -2.14 -44.57 16 16 O -1.00 -41.26 17.26 -128.00 -2.21 -43.47 16 17 C -0.80 -34.97 5.97 22.46 0.13 -34.83 16 18 C 0.00 -0.07 9.49 22.22 0.21 0.14 16 19 C -0.26 -12.45 9.80 22.73 0.22 -12.23 16 20 C 0.11 5.83 5.57 -21.29 -0.12 5.71 16 21 C -0.47 -23.37 9.05 23.46 0.21 -23.16 16 22 H 0.09 4.34 7.91 -2.91 -0.02 4.31 16 23 C 0.03 1.60 5.13 85.26 0.44 2.04 16 24 N -0.80 -39.00 10.98 21.83 0.24 -38.76 16 25 Si 0.99 34.45 29.60 68.60 2.03 36.48 16 26 H -0.26 -8.57 7.11 99.48 0.71 -7.86 16 27 H -0.26 -8.70 7.11 99.48 0.71 -7.99 16 28 H -0.26 -8.63 7.11 99.48 0.71 -7.92 16 29 C -0.21 -10.65 8.71 22.73 0.20 -10.46 16 30 C -0.02 -0.93 9.49 22.22 0.21 -0.72 16 31 H 0.06 0.88 8.14 -2.39 -0.02 0.87 16 32 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.05 0.79 7.40 -2.39 -0.02 0.78 16 34 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.09 1.57 8.05 -2.39 -0.02 1.55 16 36 H 0.10 1.71 8.03 -2.39 -0.02 1.69 16 37 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.07 1.94 7.48 -2.39 -0.02 1.92 16 40 H 0.42 9.35 8.54 -96.76 -0.83 8.52 16 41 H 0.13 4.94 7.60 -2.91 -0.02 4.92 16 42 H 0.11 4.91 8.06 -2.91 -0.02 4.88 16 43 H 0.30 13.01 8.30 -92.70 -0.77 12.24 16 44 H 0.11 5.79 6.17 -2.91 -0.02 5.77 16 45 H 0.12 4.95 7.60 -2.91 -0.02 4.92 16 Total: -1.00 -63.62 386.25 -0.28 -63.90 By element: Atomic # 1 Polarization: 40.78 SS G_CDS: 0.17 Total: 40.95 kcal Atomic # 6 Polarization: -87.79 SS G_CDS: 3.08 Total: -84.71 kcal Atomic # 7 Polarization: -69.56 SS G_CDS: -0.88 Total: -70.44 kcal Atomic # 8 Polarization: -83.69 SS G_CDS: -4.35 Total: -88.04 kcal Atomic # 14 Polarization: 34.45 SS G_CDS: 2.03 Total: 36.48 kcal Atomic # 16 Polarization: 102.18 SS G_CDS: -0.32 Total: 101.85 kcal Total: -63.62 -0.28 -63.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646177152.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.513 kcal (2) G-P(sol) polarization free energy of solvation -63.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds