Wall clock time and date at job start Tue Mar 31 2020 19:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 109.47329 * 2 1 4 4 N 1.46508 * 109.46903 * 119.99868 * 2 1 3 5 5 S 1.65598 * 119.99824 * 265.00037 * 4 2 1 6 6 C 1.81400 * 104.45101 * 64.99949 * 5 4 2 7 7 O 1.42100 * 104.27533 * 308.92955 * 5 4 2 8 8 O 1.42104 * 104.27645 * 181.07569 * 5 4 2 9 9 C 1.50704 * 109.47306 * 239.99735 * 2 1 3 10 10 O 1.21277 * 119.99982 * 257.22534 * 9 2 1 11 11 N 1.34772 * 119.99648 * 77.22588 * 9 2 1 12 12 C 1.47155 * 120.97869 * 185.14764 * 11 9 2 13 13 C 1.53294 * 108.38453 * 230.50913 * 12 11 9 14 14 O 1.42957 * 109.22457 * 307.70220 * 13 12 11 15 15 C 1.42956 * 114.16958 * 62.57860 * 14 13 12 16 16 H 1.08995 * 109.51533 * 57.33983 * 15 14 13 17 17 C 1.52999 * 109.51696 * 177.44690 * 15 14 13 18 18 N 1.46503 * 109.46689 * 299.99927 * 17 15 14 19 19 C 1.36945 * 119.99918 * 179.97438 * 18 17 15 20 20 H 1.08001 * 119.99892 * 359.97438 * 19 18 17 21 21 C 1.38813 * 119.99756 * 179.97438 * 19 18 17 22 22 N 1.31613 * 120.00268 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 119.99509 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47372 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.47135 * 120.00432 * 23 21 19 26 26 H 1.48497 * 109.47312 * 239.99796 * 23 21 19 27 27 C 1.47153 * 120.98540 * 4.86322 * 11 9 2 28 28 H 1.09011 * 109.46936 * 185.66228 * 1 2 3 29 29 H 1.08995 * 109.47531 * 305.66218 * 1 2 3 30 30 H 1.09001 * 109.46915 * 65.66772 * 1 2 3 31 31 H 0.97000 * 120.00112 * 85.00178 * 4 2 1 32 32 H 1.09001 * 109.46580 * 60.00075 * 6 5 4 33 33 H 1.08999 * 109.46975 * 179.97438 * 6 5 4 34 34 H 1.08998 * 109.47355 * 300.00187 * 6 5 4 35 35 H 1.08993 * 109.68170 * 350.23552 * 12 11 9 36 36 H 1.09000 * 109.67871 * 110.78881 * 12 11 9 37 37 H 1.09004 * 109.51035 * 67.62231 * 13 12 11 38 38 H 1.08997 * 109.51318 * 187.77452 * 13 12 11 39 39 H 1.09003 * 109.47253 * 59.99262 * 17 15 14 40 40 H 1.08993 * 109.47622 * 180.02562 * 17 15 14 41 41 H 0.97004 * 120.00508 * 359.97438 * 18 17 15 42 42 H 0.96999 * 120.00175 * 180.02562 * 22 21 19 43 43 H 1.08999 * 109.68574 * 249.21180 * 27 11 9 44 44 H 1.08995 * 109.67807 * 9.76792 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1963 5 16 2.4121 0.1772 2.5505 6 6 0.8407 0.8990 3.0985 7 8 3.2874 1.1906 2.0751 8 8 2.8606 -0.8028 3.4767 9 6 2.0324 -0.7105 -1.2304 10 8 2.4535 -1.8447 -1.1463 11 7 2.0137 -0.0854 -2.4243 12 6 2.3928 -0.7946 -3.6566 13 6 3.4270 0.0546 -4.4045 14 8 2.9187 1.3810 -4.5660 15 6 2.6853 2.0721 -3.3366 16 1 3.6094 2.1120 -2.7601 17 6 2.2060 3.4946 -3.6329 18 7 3.2296 4.2039 -4.4045 19 6 3.0209 5.5018 -4.7884 20 1 2.1014 6.0023 -4.5227 21 6 3.9910 6.1740 -5.5190 22 7 5.1112 5.5639 -5.8433 23 14 3.7059 7.9441 -6.0432 24 1 2.3775 8.3964 -5.5576 25 1 4.7650 8.8087 -5.4636 26 1 3.7489 8.0347 -7.5248 27 6 1.6076 1.3247 -2.5348 28 1 -0.3633 -1.0228 0.1014 29 1 -0.3634 0.5991 0.8349 30 1 -0.3633 0.4234 -0.9364 31 1 2.1110 -1.6562 1.1950 32 1 0.1315 0.1010 3.3185 33 1 1.0077 1.4940 3.9964 34 1 0.4386 1.5353 2.3101 35 1 2.8258 -1.7626 -3.4047 36 1 1.5127 -0.9374 -4.2835 37 1 4.3539 0.0872 -3.8319 38 1 3.6184 -0.3837 -5.3839 39 1 1.2808 3.4540 -4.2079 40 1 2.0286 4.0210 -2.6952 41 1 4.0553 3.7543 -4.6435 42 1 5.7893 6.0338 -6.3535 43 1 0.6498 1.3916 -3.0507 44 1 1.5204 1.7606 -1.5396 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700161894.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:23 Heat of formation + Delta-G solvation = -121.771753 kcal Electronic energy + Delta-G solvation = -28068.227003 eV Core-core repulsion = 23956.103707 eV Total energy + Delta-G solvation = -4112.123297 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.73020 -38.63615 -37.45573 -36.30069 -35.96070 -35.03250 -34.57031 -32.24528 -30.75476 -30.15182 -29.78095 -28.17388 -25.66805 -24.92816 -23.22655 -22.25743 -20.93691 -20.01514 -19.65888 -18.43150 -17.32872 -17.17885 -16.85743 -16.58485 -16.38648 -15.83009 -15.68456 -15.18653 -15.07105 -14.61252 -14.33694 -14.14414 -14.06486 -13.80132 -13.60177 -13.16928 -13.11230 -12.80338 -12.71126 -12.53127 -12.43549 -12.41705 -12.31469 -12.24472 -12.09313 -11.62387 -11.41932 -11.04580 -10.92268 -10.82272 -10.57341 -10.28512 -10.05513 -9.93924 -9.83590 -9.70164 -8.88784 -8.65967 -6.90994 -5.73909 -3.03153 -0.15130 2.14492 2.30571 2.65086 3.43090 3.44795 3.49576 3.52499 3.78654 3.89471 3.93503 4.29344 4.36599 4.46731 4.51107 4.53736 4.71533 4.75905 4.89615 4.95787 5.04609 5.12308 5.20625 5.25097 5.30331 5.42872 5.52996 5.58338 5.58634 5.73175 5.80605 5.86722 6.15830 6.23481 6.47188 6.57819 6.62833 7.05475 7.41510 7.70345 7.79247 8.43823 9.55778 10.12729 10.48040 11.48762 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.013953 B = 0.002943 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.281976 B = 9510.418288 C =10705.234619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.124 3.876 3 H 0.118 0.882 4 N -1.103 6.103 5 S 2.612 3.388 6 C -0.675 4.675 7 O -0.949 6.949 8 O -0.955 6.955 9 C 0.522 3.478 10 O -0.534 6.534 11 N -0.609 5.609 12 C 0.077 3.923 13 C 0.046 3.954 14 O -0.355 6.355 15 C 0.070 3.930 16 H 0.067 0.933 17 C 0.163 3.837 18 N -0.726 5.726 19 C -0.241 4.241 20 H 0.071 0.929 21 C -0.013 4.013 22 N -0.930 5.930 23 Si 0.907 3.093 24 H -0.280 1.280 25 H -0.292 1.292 26 H -0.292 1.292 27 C 0.074 3.926 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.426 0.574 32 H 0.131 0.869 33 H 0.131 0.869 34 H 0.131 0.869 35 H 0.099 0.901 36 H 0.078 0.922 37 H 0.055 0.945 38 H 0.106 0.894 39 H 0.029 0.971 40 H 0.035 0.965 41 H 0.388 0.612 42 H 0.254 0.746 43 H 0.087 0.913 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.978 -14.472 15.199 24.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.013 3.987 3 H 0.136 0.864 4 N -0.863 5.863 5 S 2.704 3.296 6 C -0.825 4.825 7 O -0.939 6.939 8 O -0.945 6.945 9 C 0.307 3.693 10 O -0.410 6.410 11 N -0.343 5.343 12 C -0.045 4.045 13 C -0.032 4.032 14 O -0.273 6.273 15 C 0.011 3.989 16 H 0.085 0.915 17 C 0.035 3.965 18 N -0.371 5.371 19 C -0.372 4.372 20 H 0.089 0.911 21 C -0.209 4.209 22 N -0.578 5.578 23 Si 0.739 3.261 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.219 1.219 27 C -0.050 4.050 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.100 0.900 31 H 0.264 0.736 32 H 0.150 0.850 33 H 0.150 0.850 34 H 0.149 0.851 35 H 0.117 0.883 36 H 0.096 0.904 37 H 0.073 0.927 38 H 0.124 0.876 39 H 0.046 0.954 40 H 0.053 0.947 41 H 0.223 0.777 42 H 0.064 0.936 43 H 0.105 0.895 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -12.018 -14.564 15.424 24.381 hybrid contribution -0.499 0.458 -0.291 0.737 sum -12.517 -14.106 15.132 24.180 Atomic orbital electron populations 1.22406 0.92457 1.04329 1.04136 1.20753 0.95736 0.97541 0.84702 0.86401 1.55501 1.83987 1.20948 1.25891 1.04855 0.76726 0.74638 0.73399 1.30653 1.24398 1.14255 1.13208 1.93666 1.60563 1.60582 1.79108 1.93634 1.79396 1.58890 1.62592 1.20391 0.78100 0.86681 0.84085 1.90678 1.46567 1.18633 1.85116 1.48130 1.66748 1.12512 1.06885 1.22402 0.99807 0.97272 0.85002 1.22942 0.95199 0.83860 1.01215 1.88173 1.84849 1.25524 1.28724 1.22897 0.96852 0.93221 0.85898 0.91517 1.20636 0.93559 0.86613 0.95704 1.42220 1.18596 1.11901 1.64336 1.19248 1.01483 0.88480 1.28009 0.91085 1.24753 0.96618 0.98436 1.01101 1.69682 1.07890 1.36441 1.43778 0.86114 0.77214 0.84771 0.78033 1.20558 1.21893 1.21895 1.22743 0.99757 0.80043 1.02418 0.90601 0.90723 0.90031 0.73641 0.85030 0.85041 0.85069 0.88251 0.90393 0.92702 0.87641 0.95355 0.94721 0.77744 0.93560 0.89493 0.88767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.88 9.28 37.16 0.34 -0.54 16 2 C 0.12 1.03 2.38 -69.08 -0.16 0.86 16 3 H 0.12 0.90 5.80 -51.93 -0.30 0.60 16 4 N -1.10 -9.03 5.27 -5.88 -0.03 -9.06 16 5 S 2.61 21.37 6.08 -107.50 -0.65 20.72 16 6 C -0.68 -2.45 10.17 101.05 1.03 -1.42 16 7 O -0.95 -11.79 17.39 -57.54 -1.00 -12.79 16 8 O -0.95 -11.06 18.08 -57.54 -1.04 -12.10 16 9 C 0.52 6.05 6.97 -10.99 -0.08 5.97 16 10 O -0.53 -7.66 15.48 5.56 0.09 -7.58 16 11 N -0.61 -6.91 3.01 -172.02 -0.52 -7.43 16 12 C 0.08 0.87 6.65 -3.53 -0.02 0.85 16 13 C 0.05 0.59 6.98 37.31 0.26 0.85 16 14 O -0.35 -5.98 10.13 -35.23 -0.36 -6.34 16 15 C 0.07 1.09 2.88 -26.36 -0.08 1.02 16 16 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 17 C 0.16 3.07 5.96 -4.04 -0.02 3.05 16 18 N -0.73 -18.32 5.50 -59.91 -0.33 -18.65 16 19 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 20 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 21 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 22 N -0.93 -28.34 13.06 55.49 0.72 -27.61 16 23 Si 0.91 22.29 29.55 -169.99 -5.02 17.26 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 26 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 27 C 0.07 0.80 5.00 -3.31 -0.02 0.78 16 28 H 0.07 0.38 8.14 -51.92 -0.42 -0.04 16 29 H 0.07 0.19 5.90 -51.93 -0.31 -0.11 16 30 H 0.08 0.38 7.31 -51.93 -0.38 0.00 16 31 H 0.43 3.57 8.05 -34.47 -0.28 3.29 16 32 H 0.13 0.26 8.14 -51.92 -0.42 -0.17 16 33 H 0.13 0.35 8.14 -51.92 -0.42 -0.07 16 34 H 0.13 0.29 6.69 -51.93 -0.35 -0.05 16 35 H 0.10 1.12 7.06 -51.93 -0.37 0.75 16 36 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.11 1.18 8.14 -51.93 -0.42 0.75 16 39 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.39 10.58 7.54 -40.82 -0.31 10.27 16 42 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 43 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.09 0.79 5.54 -51.93 -0.29 0.50 16 LS Contribution 368.08 15.07 5.55 5.55 Total: -1.00 -39.38 368.08 -7.94 -47.32 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -6.35 Total: 6.60 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: 1.01 Total: 4.12 kcal Atomic # 7 Polarization: -62.61 SS G_CDS: -0.15 Total: -62.76 kcal Atomic # 8 Polarization: -36.49 SS G_CDS: -2.31 Total: -38.80 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.26 kcal Atomic # 16 Polarization: 21.37 SS G_CDS: -0.65 Total: 20.72 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -39.38 -7.94 -47.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700161894.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.456 kcal (2) G-P(sol) polarization free energy of solvation -39.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds