Wall clock time and date at job start Tue Mar 31 2020 19:56:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 109.47329 * 2 1 4 4 N 1.46508 * 109.46903 * 119.99868 * 2 1 3 5 5 S 1.65598 * 119.99824 * 265.00037 * 4 2 1 6 6 C 1.81400 * 104.45101 * 64.99949 * 5 4 2 7 7 O 1.42100 * 104.27533 * 308.92955 * 5 4 2 8 8 O 1.42104 * 104.27645 * 181.07569 * 5 4 2 9 9 C 1.50704 * 109.47306 * 239.99735 * 2 1 3 10 10 O 1.21277 * 119.99982 * 257.22534 * 9 2 1 11 11 N 1.34772 * 119.99648 * 77.22588 * 9 2 1 12 12 C 1.47155 * 120.97869 * 185.14764 * 11 9 2 13 13 C 1.53294 * 108.38453 * 230.50913 * 12 11 9 14 14 O 1.42957 * 109.22457 * 307.70220 * 13 12 11 15 15 C 1.42956 * 114.16958 * 62.57860 * 14 13 12 16 16 H 1.08995 * 109.51533 * 57.33983 * 15 14 13 17 17 C 1.52999 * 109.51696 * 177.44690 * 15 14 13 18 18 N 1.46503 * 109.46689 * 299.99927 * 17 15 14 19 19 C 1.36945 * 119.99918 * 179.97438 * 18 17 15 20 20 H 1.08001 * 119.99892 * 359.97438 * 19 18 17 21 21 C 1.38813 * 119.99756 * 179.97438 * 19 18 17 22 22 N 1.31613 * 120.00268 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 119.99509 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47372 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.47135 * 120.00432 * 23 21 19 26 26 H 1.48497 * 109.47312 * 239.99796 * 23 21 19 27 27 C 1.47153 * 120.98540 * 4.86322 * 11 9 2 28 28 H 1.09011 * 109.46936 * 185.66228 * 1 2 3 29 29 H 1.08995 * 109.47531 * 305.66218 * 1 2 3 30 30 H 1.09001 * 109.46915 * 65.66772 * 1 2 3 31 31 H 0.97000 * 120.00112 * 85.00178 * 4 2 1 32 32 H 1.09001 * 109.46580 * 60.00075 * 6 5 4 33 33 H 1.08999 * 109.46975 * 179.97438 * 6 5 4 34 34 H 1.08998 * 109.47355 * 300.00187 * 6 5 4 35 35 H 1.08993 * 109.68170 * 350.23552 * 12 11 9 36 36 H 1.09000 * 109.67871 * 110.78881 * 12 11 9 37 37 H 1.09004 * 109.51035 * 67.62231 * 13 12 11 38 38 H 1.08997 * 109.51318 * 187.77452 * 13 12 11 39 39 H 1.09003 * 109.47253 * 59.99262 * 17 15 14 40 40 H 1.08993 * 109.47622 * 180.02562 * 17 15 14 41 41 H 0.97004 * 120.00508 * 359.97438 * 18 17 15 42 42 H 0.96999 * 120.00175 * 180.02562 * 22 21 19 43 43 H 1.08999 * 109.68574 * 249.21180 * 27 11 9 44 44 H 1.08995 * 109.67807 * 9.76792 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1963 5 16 2.4121 0.1772 2.5505 6 6 0.8407 0.8990 3.0985 7 8 3.2874 1.1906 2.0751 8 8 2.8606 -0.8028 3.4767 9 6 2.0324 -0.7105 -1.2304 10 8 2.4535 -1.8447 -1.1463 11 7 2.0137 -0.0854 -2.4243 12 6 2.3928 -0.7946 -3.6566 13 6 3.4270 0.0546 -4.4045 14 8 2.9187 1.3810 -4.5660 15 6 2.6853 2.0721 -3.3366 16 1 3.6094 2.1120 -2.7601 17 6 2.2060 3.4946 -3.6329 18 7 3.2296 4.2039 -4.4045 19 6 3.0209 5.5018 -4.7884 20 1 2.1014 6.0023 -4.5227 21 6 3.9910 6.1740 -5.5190 22 7 5.1112 5.5639 -5.8433 23 14 3.7059 7.9441 -6.0432 24 1 2.3775 8.3964 -5.5576 25 1 4.7650 8.8087 -5.4636 26 1 3.7489 8.0347 -7.5248 27 6 1.6076 1.3247 -2.5348 28 1 -0.3633 -1.0228 0.1014 29 1 -0.3634 0.5991 0.8349 30 1 -0.3633 0.4234 -0.9364 31 1 2.1110 -1.6562 1.1950 32 1 0.1315 0.1010 3.3185 33 1 1.0077 1.4940 3.9964 34 1 0.4386 1.5353 2.3101 35 1 2.8258 -1.7626 -3.4047 36 1 1.5127 -0.9374 -4.2835 37 1 4.3539 0.0872 -3.8319 38 1 3.6184 -0.3837 -5.3839 39 1 1.2808 3.4540 -4.2079 40 1 2.0286 4.0210 -2.6952 41 1 4.0553 3.7543 -4.6435 42 1 5.7893 6.0338 -6.3535 43 1 0.6498 1.3916 -3.0507 44 1 1.5204 1.7606 -1.5396 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700161894.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:22 Heat of formation + Delta-G solvation = -156.735347 kcal Electronic energy + Delta-G solvation = -28069.743139 eV Core-core repulsion = 23956.103707 eV Total energy + Delta-G solvation = -4113.639432 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.65351 -39.72018 -38.21964 -37.05936 -36.72614 -36.46151 -35.85843 -33.85772 -31.97740 -31.02299 -30.28540 -29.23762 -27.16312 -25.65901 -24.80483 -23.41603 -22.21611 -20.65386 -20.50158 -19.21017 -19.14484 -18.08381 -17.78467 -17.52882 -17.21224 -16.75842 -16.65717 -16.51153 -16.05833 -15.88293 -15.64323 -15.10680 -14.86517 -14.72058 -14.39632 -14.30228 -14.01248 -13.91376 -13.82544 -13.36941 -13.28309 -13.20954 -13.14043 -12.98337 -12.89564 -12.80761 -12.70589 -12.51335 -12.23473 -11.99895 -11.97371 -11.84140 -11.60067 -11.20919 -10.98661 -10.91484 -10.55305 -9.66646 -8.95130 -7.89826 -5.18779 -0.72485 1.35012 1.50886 1.52175 1.57394 1.62126 1.85440 2.59947 2.75926 2.87842 3.14929 3.25925 3.44929 3.54513 3.72394 3.90046 3.98143 3.98765 4.04738 4.11971 4.14070 4.19134 4.32395 4.39346 4.47585 4.51148 4.64720 4.72830 4.74350 4.84889 4.93504 5.00416 5.01381 5.16315 5.26679 5.28565 5.53988 5.91761 6.18482 6.23464 6.32023 6.90833 7.37703 8.14375 8.35947 9.34394 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.013953 B = 0.002943 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.281976 B = 9510.418288 C =10705.234619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.121 3.879 3 H 0.125 0.875 4 N -1.106 6.106 5 S 2.610 3.390 6 C -0.645 4.645 7 O -1.003 7.003 8 O -0.999 6.999 9 C 0.514 3.486 10 O -0.568 6.568 11 N -0.610 5.610 12 C 0.082 3.918 13 C 0.044 3.956 14 O -0.385 6.385 15 C 0.073 3.927 16 H 0.046 0.954 17 C 0.159 3.841 18 N -0.745 5.745 19 C -0.240 4.240 20 H 0.084 0.916 21 C -0.081 4.081 22 N -0.973 5.973 23 Si 0.975 3.025 24 H -0.260 1.260 25 H -0.296 1.296 26 H -0.297 1.297 27 C 0.083 3.917 28 H 0.076 0.924 29 H 0.107 0.893 30 H 0.090 0.910 31 H 0.424 0.576 32 H 0.159 0.841 33 H 0.149 0.851 34 H 0.157 0.843 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.039 0.961 38 H 0.121 0.879 39 H 0.037 0.963 40 H 0.057 0.943 41 H 0.373 0.627 42 H 0.249 0.751 43 H 0.110 0.890 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.611 -13.768 16.536 27.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.010 3.990 3 H 0.143 0.857 4 N -0.865 5.865 5 S 2.707 3.293 6 C -0.800 4.800 7 O -0.993 6.993 8 O -0.990 6.990 9 C 0.302 3.698 10 O -0.447 6.447 11 N -0.344 5.344 12 C -0.040 4.040 13 C -0.033 4.033 14 O -0.304 6.304 15 C 0.014 3.986 16 H 0.064 0.936 17 C 0.032 3.968 18 N -0.387 5.387 19 C -0.371 4.371 20 H 0.102 0.898 21 C -0.273 4.273 22 N -0.624 5.624 23 Si 0.804 3.196 24 H -0.184 1.184 25 H -0.224 1.224 26 H -0.224 1.224 27 C -0.039 4.039 28 H 0.095 0.905 29 H 0.125 0.875 30 H 0.109 0.891 31 H 0.260 0.740 32 H 0.178 0.822 33 H 0.168 0.832 34 H 0.175 0.825 35 H 0.115 0.885 36 H 0.114 0.886 37 H 0.058 0.942 38 H 0.138 0.862 39 H 0.055 0.945 40 H 0.074 0.926 41 H 0.204 0.796 42 H 0.058 0.942 43 H 0.128 0.872 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -15.667 -13.882 16.774 26.824 hybrid contribution 0.571 0.180 -0.668 0.897 sum -15.095 -13.702 16.106 25.981 Atomic orbital electron populations 1.22484 0.89295 1.05279 1.06052 1.20973 0.98083 0.97099 0.82822 0.85713 1.55396 1.84302 1.20702 1.26107 1.04653 0.78363 0.73564 0.72676 1.30404 1.19816 1.15250 1.14560 1.93597 1.64310 1.61493 1.79886 1.93571 1.81579 1.60388 1.63459 1.21093 0.77299 0.86498 0.84898 1.90661 1.48075 1.20330 1.85637 1.48204 1.66550 1.12643 1.06966 1.22334 0.99868 0.96581 0.85219 1.23068 0.95130 0.82817 1.02271 1.88111 1.85287 1.27215 1.29781 1.22772 0.97559 0.92381 0.85888 0.93641 1.20875 0.92154 0.88162 0.95602 1.42492 1.19462 1.11679 1.65098 1.19744 1.01400 0.89541 1.26447 0.89772 1.25624 0.96719 1.02723 1.02266 1.69857 1.09012 1.38107 1.45420 0.85040 0.77730 0.79804 0.76985 1.18372 1.22354 1.22443 1.22732 0.98559 0.79195 1.03462 0.90535 0.87475 0.89135 0.73968 0.82248 0.83243 0.82496 0.88521 0.88624 0.94215 0.86157 0.94492 0.92554 0.79599 0.94247 0.87173 0.85829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.02 9.28 71.98 0.67 -0.35 16 2 C 0.12 1.73 2.38 44.24 0.11 1.84 16 3 H 0.13 1.58 5.80 -2.39 -0.01 1.57 16 4 N -1.11 -16.86 5.27 -172.51 -0.91 -17.76 16 5 S 2.61 40.03 6.08 -56.49 -0.34 39.68 16 6 C -0.65 -1.76 10.17 113.37 1.15 -0.60 16 7 O -1.00 -24.92 17.39 -127.65 -2.22 -27.14 16 8 O -1.00 -23.38 18.08 -127.65 -2.31 -25.69 16 9 C 0.51 11.34 6.97 87.66 0.61 11.95 16 10 O -0.57 -16.30 15.48 -3.02 -0.05 -16.34 16 11 N -0.61 -12.94 3.01 -816.55 -2.46 -15.40 16 12 C 0.08 1.78 6.65 86.35 0.57 2.36 16 13 C 0.04 1.17 6.98 72.08 0.50 1.67 16 14 O -0.39 -13.01 10.13 -148.98 -1.51 -14.52 16 15 C 0.07 2.21 2.88 30.84 0.09 2.30 16 16 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 17 C 0.16 5.75 5.96 86.38 0.51 6.27 16 18 N -0.74 -37.73 5.50 -343.44 -1.89 -39.61 16 19 C -0.24 -13.18 9.99 84.03 0.84 -12.34 16 20 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 21 C -0.08 -4.70 5.50 84.86 0.47 -4.24 16 22 N -0.97 -60.78 13.06 21.65 0.28 -60.50 16 23 Si 0.98 45.94 29.55 68.60 2.03 47.97 16 24 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 25 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 26 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 27 C 0.08 1.59 5.00 86.50 0.43 2.03 16 28 H 0.08 0.49 8.14 -2.38 -0.02 0.48 16 29 H 0.11 -0.07 5.90 -2.39 -0.01 -0.08 16 30 H 0.09 0.42 7.31 -2.39 -0.02 0.40 16 31 H 0.42 7.04 8.05 -96.75 -0.78 6.26 16 32 H 0.16 -0.27 8.14 -2.39 -0.02 -0.29 16 33 H 0.15 0.09 8.14 -2.39 -0.02 0.07 16 34 H 0.16 -0.25 6.69 -2.39 -0.02 -0.26 16 35 H 0.10 2.17 7.06 -2.39 -0.02 2.15 16 36 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.04 1.14 8.14 -2.38 -0.02 1.12 16 38 H 0.12 2.71 8.14 -2.39 -0.02 2.69 16 39 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.37 20.90 7.54 -92.70 -0.70 20.21 16 42 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 43 H 0.11 1.67 8.14 -2.39 -0.02 1.66 16 44 H 0.12 1.62 5.54 -2.39 -0.01 1.61 16 Total: -1.00 -89.30 368.08 -3.85 -93.16 By element: Atomic # 1 Polarization: 25.71 SS G_CDS: -0.44 Total: 25.27 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: 5.96 Total: 10.87 kcal Atomic # 7 Polarization: -128.30 SS G_CDS: -4.97 Total: -133.28 kcal Atomic # 8 Polarization: -77.60 SS G_CDS: -6.08 Total: -83.68 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.97 kcal Atomic # 16 Polarization: 40.03 SS G_CDS: -0.34 Total: 39.68 kcal Total: -89.30 -3.85 -93.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700161894.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.578 kcal (2) G-P(sol) polarization free energy of solvation -89.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds