Wall clock time and date at job start Tue Mar 31 2020 18:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 O 1.42906 * 109.47321 * 239.99826 * 2 1 3 5 5 C 1.34914 * 116.99911 * 90.00102 * 4 2 1 6 6 O 1.21634 * 120.00137 * 359.97438 * 5 4 2 7 7 C 1.46135 * 119.99980 * 180.02562 * 5 4 2 8 8 C 1.35015 * 120.00202 * 179.97438 * 7 5 4 9 9 C 1.47036 * 120.00210 * 179.97438 * 8 7 5 10 10 C 1.39917 * 120.19375 * 359.72123 * 9 8 7 11 11 C 1.37801 * 119.85085 * 179.67690 * 10 9 8 12 12 C 1.38487 * 120.24294 * 0.62705 * 11 10 9 13 13 C 1.38274 * 120.39252 * 359.67526 * 12 11 10 14 14 C 1.38231 * 120.14058 * 359.97438 * 13 12 11 15 15 F 1.35101 * 120.12119 * 179.97438 * 14 13 12 16 16 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 17 17 O 1.21283 * 120.00236 * 114.99716 * 16 2 1 18 18 N 1.34774 * 119.99861 * 294.99892 * 16 2 1 19 19 C 1.46507 * 120.00108 * 359.97438 * 18 16 2 20 20 C 1.46496 * 120.00367 * 180.02562 * 18 16 2 21 21 C 1.50695 * 109.47370 * 89.99805 * 20 18 16 22 22 H 1.08005 * 120.00163 * 0.02562 * 21 20 18 23 23 C 1.37882 * 120.00369 * 180.02562 * 21 20 18 24 24 N 1.31512 * 119.99460 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00346 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47115 * 59.99425 * 25 23 21 27 27 H 1.48496 * 109.47344 * 179.97438 * 25 23 21 28 28 H 1.48505 * 109.47009 * 299.99602 * 25 23 21 29 29 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 30 30 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 31 31 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 32 32 H 1.07994 * 120.00144 * 359.97438 * 7 5 4 33 33 H 1.08002 * 119.99324 * 359.97438 * 8 7 5 34 34 H 1.08002 * 120.07249 * 359.97438 * 10 9 8 35 35 H 1.08003 * 119.87819 * 180.31752 * 11 10 9 36 36 H 1.08004 * 119.80948 * 179.69583 * 12 11 10 37 37 H 1.07999 * 119.92856 * 180.02562 * 13 12 11 38 38 H 1.09002 * 109.47123 * 89.99538 * 19 18 16 39 39 H 1.08997 * 109.47369 * 209.99929 * 19 18 16 40 40 H 1.09002 * 109.47042 * 330.00239 * 19 18 16 41 41 H 1.09001 * 109.47223 * 209.99860 * 20 18 16 42 42 H 1.09007 * 109.46674 * 329.99720 * 20 18 16 43 43 H 0.96998 * 120.00028 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6737 -1.1668 5 6 2.2106 0.0786 -2.2679 6 8 1.9893 1.2743 -2.2373 7 6 2.6965 -0.5432 -3.4979 8 6 2.9004 0.2095 -4.6000 9 6 3.3899 -0.4160 -5.8374 10 6 3.6513 -1.7900 -5.8755 11 6 4.1035 -2.3701 -7.0408 12 6 4.3124 -1.5960 -8.1700 13 6 4.0633 -0.2361 -8.1417 14 6 3.6025 0.3612 -6.9834 15 9 3.3597 1.6899 -6.9562 16 6 2.0324 -0.7105 1.2305 17 8 2.6530 -1.7468 1.1215 18 7 1.7919 -0.1942 2.4520 19 6 1.0427 1.0579 2.5837 20 6 2.2807 -0.8845 3.6482 21 6 3.6620 -0.3861 3.9866 22 1 4.1291 0.3696 3.3723 23 6 4.3298 -0.8948 5.0804 24 7 3.7609 -1.8147 5.8286 25 14 6.0417 -0.2766 5.5002 26 1 5.9907 1.1848 5.7588 27 1 6.5372 -0.9763 6.7127 28 1 6.9581 -0.5464 4.3632 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 2.8926 -1.6048 -3.5253 33 1 2.7039 1.2712 -4.5727 34 1 3.4944 -2.3954 -4.9950 35 1 4.3005 -3.4316 -7.0722 36 1 4.6716 -2.0571 -9.0781 37 1 4.2284 0.3604 -9.0268 38 1 -0.0215 0.8374 2.6677 39 1 1.3755 1.5884 3.4758 40 1 1.2166 1.6794 1.7052 41 1 1.6082 -0.6857 4.4827 42 1 2.3177 -1.9573 3.4589 43 1 4.2305 -2.1723 6.5983 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007854561.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:46 Heat of formation + Delta-G solvation = -115.249963 kcal Electronic energy + Delta-G solvation = -27465.971587 eV Core-core repulsion = 23198.767183 eV Total energy + Delta-G solvation = -4267.204404 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.137 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.35625 -40.74945 -39.52450 -38.89517 -36.61552 -34.91561 -34.62534 -32.87475 -31.60934 -31.09855 -30.15378 -27.70747 -26.21138 -25.56595 -24.27880 -23.36124 -22.65362 -21.59297 -19.77273 -18.85150 -18.58053 -17.77135 -16.98537 -16.57937 -16.46175 -16.28271 -16.08539 -15.98522 -15.66112 -15.18417 -14.73154 -14.58616 -14.21862 -14.19806 -13.63609 -13.54466 -13.38355 -13.05103 -12.94401 -12.71607 -12.38526 -12.18365 -12.09768 -11.89645 -11.68271 -11.58858 -11.41137 -11.19232 -10.93761 -10.91538 -10.68253 -10.65287 -10.53933 -10.17167 -9.66862 -9.39387 -8.89568 -8.76871 -8.44589 -7.72562 -6.05863 -4.10805 -0.08446 0.68987 1.38984 2.52312 2.77651 3.21892 3.27503 3.32304 3.36239 3.40724 3.67250 3.85894 4.15561 4.23015 4.38926 4.43931 4.65224 4.72780 4.79500 4.83315 4.90961 5.04093 5.11170 5.28639 5.30437 5.36425 5.49984 5.52310 5.63783 5.65191 5.68094 5.83268 5.86440 5.89006 6.01189 6.02741 6.23036 6.32195 6.42521 6.98455 7.38810 7.46440 7.72187 7.90169 8.20154 8.29547 8.84672 8.99587 9.54135 11.02228 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.015625 B = 0.002172 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.587899 B =12885.760413 C =13620.108044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.068 3.932 3 H 0.104 0.896 4 O -0.315 6.315 5 C 0.495 3.505 6 O -0.512 6.512 7 C -0.172 4.172 8 C -0.019 4.019 9 C -0.107 4.107 10 C -0.071 4.071 11 C -0.131 4.131 12 C -0.079 4.079 13 C -0.158 4.158 14 C 0.122 3.878 15 F -0.131 7.131 16 C 0.509 3.491 17 O -0.520 6.520 18 N -0.596 5.596 19 C 0.076 3.924 20 C 0.247 3.753 21 C -0.529 4.529 22 H 0.057 0.943 23 C 0.062 3.938 24 N -0.894 5.894 25 Si 0.899 3.101 26 H -0.277 1.277 27 H -0.286 1.286 28 H -0.276 1.276 29 H 0.068 0.932 30 H 0.088 0.912 31 H 0.071 0.929 32 H 0.146 0.854 33 H 0.143 0.857 34 H 0.143 0.857 35 H 0.136 0.864 36 H 0.136 0.864 37 H 0.139 0.861 38 H 0.050 0.950 39 H 0.078 0.922 40 H 0.058 0.942 41 H 0.036 0.964 42 H 0.046 0.954 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.522 2.626 -26.900 27.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.009 3.991 3 H 0.122 0.878 4 O -0.230 6.230 5 C 0.342 3.658 6 O -0.402 6.402 7 C -0.191 4.191 8 C -0.037 4.037 9 C -0.108 4.108 10 C -0.088 4.088 11 C -0.149 4.149 12 C -0.097 4.097 13 C -0.176 4.176 14 C 0.103 3.897 15 F -0.109 7.109 16 C 0.293 3.707 17 O -0.395 6.395 18 N -0.329 5.329 19 C -0.068 4.068 20 C 0.128 3.872 21 C -0.568 4.568 22 H 0.075 0.925 23 C -0.141 4.141 24 N -0.533 5.533 25 Si 0.727 3.273 26 H -0.202 1.202 27 H -0.211 1.211 28 H -0.201 1.201 29 H 0.087 0.913 30 H 0.106 0.894 31 H 0.090 0.910 32 H 0.164 0.836 33 H 0.160 0.840 34 H 0.161 0.839 35 H 0.154 0.846 36 H 0.154 0.846 37 H 0.157 0.843 38 H 0.069 0.931 39 H 0.097 0.903 40 H 0.077 0.923 41 H 0.054 0.946 42 H 0.064 0.936 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.248 2.343 -26.702 27.139 hybrid contribution 0.889 0.808 0.405 1.268 sum -3.359 3.150 -26.297 26.698 Atomic orbital electron populations 1.22311 0.92513 1.03991 1.04005 1.22260 0.95758 0.97871 0.83223 0.87797 1.86297 1.76439 1.40916 1.19336 1.21219 0.74782 0.85195 0.84641 1.90864 1.48776 1.16002 1.84597 1.22188 1.05012 1.01698 0.90209 1.22249 0.91005 1.00507 0.89957 1.18962 1.04887 0.94169 0.92809 1.21475 0.95582 0.92781 0.99010 1.21224 1.00155 1.00868 0.92635 1.21219 0.96868 0.92683 0.98896 1.21136 1.02867 0.96237 0.97399 1.17883 0.99787 0.77585 0.94443 1.91529 1.91679 1.30749 1.96963 1.19782 0.81149 0.85934 0.83840 1.90701 1.39655 1.23426 1.85757 1.48069 1.54019 1.23924 1.06909 1.21845 0.95351 0.86732 1.02833 1.19346 0.94280 0.93800 0.79742 1.21389 1.01046 1.23038 1.11333 0.92488 1.24933 0.98220 0.94882 0.96020 1.69918 1.38167 1.27991 1.17224 0.86541 0.84226 0.78793 0.77773 1.20221 1.21126 1.20141 0.91347 0.89357 0.90971 0.83635 0.83961 0.83931 0.84638 0.84641 0.84265 0.93117 0.90300 0.92330 0.94599 0.93641 0.92605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.29 9.26 37.16 0.34 -1.95 16 2 C 0.07 1.16 2.12 -27.88 -0.06 1.11 16 3 H 0.10 1.73 6.10 -51.93 -0.32 1.41 16 4 O -0.32 -5.45 9.31 -47.83 -0.45 -5.89 16 5 C 0.50 7.48 7.83 33.90 0.27 7.74 16 6 O -0.51 -8.48 15.47 -19.37 -0.30 -8.78 16 7 C -0.17 -1.97 9.53 -37.56 -0.36 -2.32 16 8 C -0.02 -0.19 9.26 -37.16 -0.34 -0.54 16 9 C -0.11 -0.96 5.87 -105.01 -0.62 -1.58 16 10 C -0.07 -0.51 9.41 -39.11 -0.37 -0.88 16 11 C -0.13 -0.73 10.02 -39.65 -0.40 -1.13 16 12 C -0.08 -0.41 10.04 -39.48 -0.40 -0.80 16 13 C -0.16 -1.02 10.01 -39.57 -0.40 -1.42 16 14 C 0.12 1.07 7.30 -38.89 -0.28 0.79 16 15 F -0.13 -1.30 16.62 2.25 0.04 -1.27 16 16 C 0.51 11.09 7.10 -10.98 -0.08 11.01 16 17 O -0.52 -13.65 16.09 -14.30 -0.23 -13.88 16 18 N -0.60 -12.79 2.86 -182.95 -0.52 -13.31 16 19 C 0.08 1.21 8.92 59.85 0.53 1.74 16 20 C 0.25 6.47 5.16 -5.20 -0.03 6.44 16 21 C -0.53 -15.12 9.39 -34.44 -0.32 -15.44 16 22 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 23 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 24 N -0.89 -26.56 13.29 55.43 0.74 -25.82 16 25 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 16 26 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 27 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 28 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.09 1.04 5.12 -51.93 -0.27 0.78 16 31 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.15 1.34 6.08 -52.49 -0.32 1.02 16 33 H 0.14 1.57 7.20 -52.49 -0.38 1.19 16 34 H 0.14 0.84 6.17 -52.49 -0.32 0.52 16 35 H 0.14 0.47 8.06 -52.48 -0.42 0.04 16 36 H 0.14 0.35 8.06 -52.48 -0.42 -0.07 16 37 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 38 H 0.05 0.66 7.02 -51.93 -0.36 0.30 16 39 H 0.08 1.27 8.07 -51.93 -0.42 0.85 16 40 H 0.06 0.79 6.08 -51.93 -0.32 0.48 16 41 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 42 H 0.05 1.34 7.42 -51.92 -0.39 0.95 16 43 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 375.06 15.07 5.65 5.65 Total: -1.00 -35.58 375.06 -7.86 -43.44 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: -5.17 Total: -1.58 kcal Atomic # 6 Polarization: 7.05 SS G_CDS: -2.60 Total: 4.45 kcal Atomic # 7 Polarization: -39.35 SS G_CDS: 0.21 Total: -39.13 kcal Atomic # 8 Polarization: -27.59 SS G_CDS: -0.97 Total: -28.56 kcal Atomic # 9 Polarization: -1.30 SS G_CDS: 0.04 Total: -1.27 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.58 -7.86 -43.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007854561.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.811 kcal (2) G-P(sol) polarization free energy of solvation -35.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds